Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04152 Selenicereus undatus HOM05D000425 ORTHO05D000373 1.3e-42 176.0 91 100.0
AUR62038484 Chenopodium quinoa HOM05D000425 ORTHO05D000373 7.4e-14 80.5 53 75.5
Oeu046635.3 Olea europaea HOM05D000425 ORTHO05D000373 3.1e-12 75.1 53 69.8
Oeu015082.1 Olea europaea HOM05D000425 ORTHO05D000373 4.1e-12 74.7 83 51.8
Sc09g0006110 Simmondsia chinensis HOM05D000425 ORTHO05D000373 4.1e-12 74.7 52 73.1
TAR633G2021 Trochodendron aralioides HOM05D000425 ORTHO05D000373 5.3e-12 74.3 52 69.2
Manes.10G049300 Manihot esculenta HOM05D000425 ORTHO05D000373 6.9e-12 73.9 52 67.3
Manes.07G095400 Manihot esculenta HOM05D000425 ORTHO05D000373 1.5e-11 72.8 52 65.4
EL10Ac7g16775 Beta vulgaris HOM05D000425 ORTHO05D000373 2.0e-11 72.4 51 70.6
Oeu035819.2 Olea europaea HOM05D000425 ORTHO05D000373 2.6e-11 72.0 53 67.9
MSTRG.384 Avicennia marina HOM05D000425 ORTHO05D000373 4.5e-11 71.2 53 67.9
Duzib114G0694 Durio zibethinus HOM05D000425 ORTHO05D000373 4.5e-11 71.2 52 65.4
Oeu000808.1 Olea europaea HOM05D000425 ORTHO05D000373 4.5e-11 71.2 53 62.3
Gohir.A10G204200 Gossypium hirsutum HOM05D000425 ORTHO05D000373 5.9e-11 70.9 51 68.6
Gohir.D10G212100 Gossypium hirsutum HOM05D000425 ORTHO05D000373 5.9e-11 70.9 51 68.6
Gorai.011G238000 Gossypium raimondii HOM05D000425 ORTHO05D000373 5.9e-11 70.9 51 68.6
Actinidia32438 Actinidia chinensis HOM05D000425 ORTHO05D000373 7.7e-11 70.5 51 68.6
Duzib128G1117 Durio zibethinus HOM05D000425 ORTHO05D000373 7.7e-11 70.5 52 65.4
MD01G1104700 Malus domestica HOM05D000425 ORTHO05D000373 7.7e-11 70.5 52 63.5
PGR044G0567 Punica granatum HOM05D000425 ORTHO05D000373 7.7e-11 70.5 52 69.2
Actinidia06741 Actinidia chinensis HOM05D000425 ORTHO05D000373 1.0e-10 70.1 53 67.9
Duzib106G1167 Durio zibethinus HOM05D000425 ORTHO05D000373 1.0e-10 70.1 52 63.5
Gohir.A05G294300 Gossypium hirsutum HOM05D000425 ORTHO05D000373 1.0e-10 70.1 52 65.4
Gohir.D05G294800 Gossypium hirsutum HOM05D000425 ORTHO05D000373 1.0e-10 70.1 52 65.4
Gorai.009G311500 Gossypium raimondii HOM05D000425 ORTHO05D000373 1.0e-10 70.1 52 65.4
Thecc.10G080300 Theobroma cacao HOM05D000425 ORTHO05D000373 1.0e-10 70.1 52 63.5
Oeu020826.1 Olea europaea HOM05D000158 ORTHO05D000197 1.3e-10 69.7 53 64.2
GSVIVG01016234001 Vitis vinifera HOM05D000425 ORTHO05D000373 1.3e-10 69.7 53 67.9
Prupe.2G209900 Prunus persica HOM05D000425 ORTHO05D000373 1.7e-10 69.3 79 46.8
SGA_v2.0_scaffold2G01361 Striga asiatica HOM05D000425 ORTHO05D000373 1.7e-10 69.3 53 69.8
CSS0006346 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 2.2e-10 68.9 53 66.0
Cc02_g11040 Coffea canephora HOM05D000425 ORTHO05D000373 2.2e-10 68.9 51 64.7
MD07G1171300 Malus domestica HOM05D000425 ORTHO05D000373 2.2e-10 68.9 52 61.5
Thecc.10G080000 Theobroma cacao HOM05D000425 ORTHO05D000373 2.2e-10 68.9 52 63.5
CiPaw.01G269900 Carya illinoinensis HOM05D000425 ORTHO05D000373 2.9e-10 68.6 52 61.5
Potri.008G036300 Populus trichocarpa HOM05D000425 ORTHO05D000373 2.9e-10 68.6 51 68.6
CANSAT56G4283 Cannabis sativa HOM05D000425 ORTHO05D000373 3.8e-10 68.2 51 62.7
CAN.G321.40 Capsicum annuum HOM05D000425 ORTHO05D000373 5.0e-10 67.8 51 62.7
Eucgr.J01066 Eucalyptus grandis HOM05D000425 ORTHO05D000373 5.0e-10 67.8 51 66.7
PGR142G2295 Punica granatum HOM05D000425 ORTHO05D000373 5.0e-10 67.8 52 61.5
Lj5g0024381 Lotus japonicus HOM05D000425 ORTHO05D000373 6.5e-10 67.4 81 48.1
SalBow4G1724 Salvia bowleyana HOM05D000425 ORTHO05D000373 6.5e-10 67.4 53 64.2
SalBow4G1926 Salvia bowleyana HOM05D000425 ORTHO05D000373 6.5e-10 67.4 53 64.2
Potri.010G226000 Populus trichocarpa HOM05D000425 ORTHO05D000373 1.1e-09 66.6 51 64.7
ClCG08G007640 Citrullus lanatus HOM05D000425 ORTHO05D000373 1.4e-09 66.2 81 45.7
RcHm_v2.0_Chr1g0362821 Rosa chinensis HOM05D000425 ORTHO05D000373 1.4e-09 66.2 79 45.6
TWI38G1268 Tripterygium wilfordii HOM05D000425 ORTHO05D000373 1.4e-09 66.2 51 66.7
BcaB02g09142 Brassica carinata HOM05D000425 ORTHO05D000373 1.9e-09 65.9 51 64.7
PGR142G1800 Punica granatum HOM05D000425 ORTHO05D000373 1.9e-09 65.9 52 61.5
Aqoxy1G01173_Aqoxy1G01174 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 2.5e-09 65.5 53 60.4
Dinv36404 Davidia involucrata HOM05D000425 ORTHO05D000373 2.5e-09 65.5 48 70.8
Lj2A18T49 Lonicera japonica HOM05D000425 ORTHO05D000373 2.5e-09 65.5 53 64.2
Phvul.007G097200 Phaseolus vulgaris HOM05D000425 ORTHO05D000373 2.5e-09 65.5 52 61.5
Sc23g0004910 Simmondsia chinensis HOM05D000425 ORTHO05D000373 2.5e-09 65.5 53 56.6
Sabra08G0024400 Salix brachista HOM05D000425 ORTHO05D000373 3.2e-09 65.1 51 62.7
Sed0022938 Sechium edule HOM05D000425 ORTHO05D000373 3.2e-09 65.1 81 45.7
Solyc11g008440.3 Solanum lycopersicum HOM05D000425 ORTHO05D000373 3.2e-09 65.1 51 56.9
Sopen11g004230 Solanum pennellii HOM05D000425 ORTHO05D000373 3.2e-09 65.1 51 56.9
Lalb_Chr21g0313751 Lupinus albus HOM05D000425 ORTHO05D000373 4.2e-09 64.7 81 44.4
PSO063G3625 Papaver somniferum HOM05D000425 ORTHO05D000373 4.2e-09 64.7 53 58.5
EL10Ac7g16774 Beta vulgaris HOM05D000425 ORTHO05D000373 5.5e-09 64.3 51 60.8
MELO3C012409.2 Cucumis melo HOM05D000425 ORTHO05D000373 5.5e-09 64.3 60 53.3
Lsat_1_v5_gn_2_112901 Lactuca sativa HOM05D000425 ORTHO05D000373 5.5e-09 64.3 51 64.7
Nn2g11557 Nelumbo nucifera HOM05D000425 ORTHO05D000373 5.5e-09 64.3 53 58.5
Sabra10G0174200 Salix brachista HOM05D000425 ORTHO05D000373 5.5e-09 64.3 51 58.8
Sed0017499 Sechium edule HOM05D000425 ORTHO05D000373 5.5e-09 64.3 60 53.3
arahy.Tifrunner.gnm1.ann1.3H39ZY Arachis hypogaea HOM05D000425 ORTHO05D000373 7.2e-09 63.9 94 37.2
arahy.Tifrunner.gnm1.ann1.K7T5R5 Arachis hypogaea HOM05D000425 ORTHO05D000373 7.2e-09 63.9 94 37.2
CSS0002138 Camellia sinensis var. sinensis HOM05D000425 ORTHO05D000373 7.2e-09 63.9 53 58.5
Glyma.10G208800 Glycine max HOM05D000425 ORTHO05D000373 7.2e-09 63.9 82 43.9
PSO339G4452 Papaver somniferum HOM05D000425 ORTHO05D000373 7.2e-09 63.9 51 58.8
SGA_v2.0_scaffold62G21395 Striga asiatica HOM05D000425 ORTHO05D000373 7.2e-09 63.9 53 60.4
CsaV3_5G036080 Cucumis sativus L. HOM05D000425 ORTHO05D000373 9.4e-09 63.5 51 54.9
Migut.F01963 Erythranthe guttata HOM05D000425 ORTHO05D000373 9.4e-09 63.5 53 62.3
THA.LOC104825222 Tarenaya hassleriana HOM05D000425 ORTHO05D000373 9.4e-09 63.5 51 64.7
Ciclev10031131m.g Citrus clementina HOM05D000425 ORTHO05D000373 1.2e-08 63.2 51 60.8
CsaV3_6G036610 Cucumis sativus L. HOM05D000425 ORTHO05D000373 1.2e-08 63.2 81 44.4
Lalb_Chr02g0152161 Lupinus albus HOM05D000425 ORTHO05D000373 1.2e-08 63.2 81 43.2
ECA238G4802 Erigeron canadensis HOM05D000425 ORTHO05D000373 1.6e-08 62.8 51 60.8
Thhalv10010278m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 1.6e-08 62.8 51 66.7
FAN10G2737 Fragaria x ananassa HOM05D000425 ORTHO05D000373 1.6e-08 62.8 51 54.9
FAN10G3551 Fragaria x ananassa HOM05D000425 ORTHO05D000373 1.6e-08 62.8 79 44.3
CAN.G779.2 Capsicum annuum HOM05D000425 ORTHO05D000373 2.1e-08 62.4 53 58.5
FvH4_7g18870 Fragaria vesca HOM05D000425 ORTHO05D000373 2.1e-08 62.4 51 54.9
FAN01G1533 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.1e-08 62.4 51 54.9
FAN06G2715 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.1e-08 62.4 51 54.9
FAN06G3886 Fragaria x ananassa HOM05D000425 ORTHO05D000373 2.1e-08 62.4 51 54.9
Sp4g21480 Schrenkiella parvula HOM05D000425 ORTHO05D000373 2.1e-08 62.4 51 66.7
Sed0010197 Sechium edule HOM05D000425 ORTHO05D000373 2.1e-08 62.4 81 42.0
Peaxi162Scf00253g00417 Petunia axillaris HOM05D000425 ORTHO05D000373 2.7e-08 62.0 51 58.8
Sp5g07590 Schrenkiella parvula HOM05D000425 ORTHO05D000373 2.7e-08 62.0 51 64.7
Solyc03g063040.4 Solanum lycopersicum HOM05D000425 ORTHO05D000373 2.7e-08 62.0 51 60.8
BcaC02g12041 Brassica carinata HOM05D000425 ORTHO05D000373 3.6e-08 61.6 51 60.8
C04p08580 Brassica napus HOM05D000425 ORTHO05D000373 3.6e-08 61.6 51 60.8
BolC4t22453H Brassica oleracea HOM05D000425 ORTHO05D000373 3.6e-08 61.6 51 60.8
Thhalv10016467m.g Eutrema salsugineum HOM05D000425 ORTHO05D000373 3.6e-08 61.6 51 60.8
C08p29990 Brassica napus HOM05D000425 ORTHO05D000373 4.7e-08 61.2 51 66.7
CDE05G0235 Ceratophyllum demersum HOM05D000425 ORTHO05D000373 4.7e-08 61.2 53 56.6
unitig_749.g13571 Utricularia gibba HOM05D000425 ORTHO05D000373 4.7e-08 61.2 51 58.8
BcaB01g00156 Brassica carinata HOM05D000425 ORTHO05D000373 6.1e-08 60.8 51 64.7
BcaC07g39779 Brassica carinata HOM05D000425 ORTHO05D000373 6.1e-08 60.8 51 64.7
A05p07170 Brassica napus HOM05D000425 ORTHO05D000373 6.1e-08 60.8 51 56.9
A09p47760 Brassica napus HOM05D000425 ORTHO05D000373 6.1e-08 60.8 51 64.7
BolC8t50608H Brassica oleracea HOM05D000425 ORTHO05D000373 6.1e-08 60.8 51 64.7
BraA05t19682Z Brassica rapa HOM05D000425 ORTHO05D000373 6.1e-08 60.8 51 56.9
BraA09t40234Z Brassica rapa HOM05D000425 ORTHO05D000373 6.1e-08 60.8 51 64.7
Migut.F01722 Erythranthe guttata HOM05D000425 ORTHO05D000373 6.1e-08 60.8 51 58.8
CARHR133890 Cardamine hirsuta HOM05D000425 ORTHO05D000373 7.9e-08 60.5 51 58.8
ClCG05G021180 Citrullus lanatus HOM05D000425 ORTHO05D000373 7.9e-08 60.5 51 51.0
MELO3C019816.2 Cucumis melo HOM05D000425 ORTHO05D000373 7.9e-08 60.5 81 42.0
Lalb_Chr19g0129121 Lupinus albus HOM05D000425 ORTHO05D000373 7.9e-08 60.5 52 53.8
Sopen03g015320 Solanum pennellii HOM05D000425 ORTHO05D000373 7.9e-08 60.5 51 58.8
Aa31LG5G20470 Aethionema arabicum HOM05D000425 ORTHO05D000373 1.0e-07 60.1 51 60.8
AL4G36430 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 1.0e-07 60.1 51 58.8
AL92U10100 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 1.0e-07 60.1 51 58.8
AT2G39130 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 1.0e-07 60.1 51 58.8
Glyma.20G181900 Glycine max HOM05D000425 ORTHO05D000373 1.0e-07 60.1 82 41.5
A04p29800 Brassica napus HOM05D000425 ORTHO05D000373 1.4e-07 59.7 51 60.8
C04p67060 Brassica napus HOM05D000425 ORTHO05D000373 1.4e-07 59.7 51 60.8
BolC4t28208H Brassica oleracea HOM05D000425 ORTHO05D000373 1.4e-07 59.7 51 60.8
BraA04t18442Z Brassica rapa HOM05D000425 ORTHO05D000373 1.4e-07 59.7 51 60.8
Carub.0005s2143 Capsella rubella HOM05D000425 ORTHO05D000373 1.4e-07 59.7 51 58.8
Glyma.18G154800 Glycine max HOM05D000425 ORTHO05D000373 1.4e-07 59.7 82 40.2
BcaC02g12909 Brassica carinata HOM05D000425 ORTHO05D000373 1.8e-07 59.3 51 58.8
DCAR_019090 Daucus carota HOM05D000425 ORTHO05D000373 1.8e-07 59.3 51 56.9
Lalb_Chr01g0022581 Lupinus albus HOM05D000425 ORTHO05D000373 1.8e-07 59.3 47 59.6
Nn2g11172 Nelumbo nucifera HOM05D000425 ORTHO05D000373 1.8e-07 59.3 79 44.3
ATR0680G312 Amborella trichopoda HOM05D000425 ORTHO05D000373 2.3e-07 58.9 51 52.9
Lalb_Chr01g0010451 Lupinus albus HOM05D000425 ORTHO05D000373 3.0e-07 58.5 81 35.8
Nn2g13759 Nelumbo nucifera HOM05D000425 ORTHO05D000373 3.9e-07 58.2 53 58.5
Ca_10549_v3 Cicer arietinum L. HOM05D000425 ORTHO05D000373 5.1e-07 57.8 81 39.5
Medtr1g094620 Medicago truncatula HOM05D000425 ORTHO05D000373 5.1e-07 57.8 81 40.7
VMungo0720G0628 Vigna mungo HOM05D000425 ORTHO05D000373 5.1e-07 57.8 51 54.9
CARHR164780 Cardamine hirsuta HOM05D000425 ORTHO05D000373 6.7e-07 57.4 48 66.7
TPR.G1954 Trifolium pratense HOM05D000425 ORTHO05D000373 6.7e-07 57.4 81 42.0
BcaC01g04229 Brassica carinata HOM05D000425 ORTHO05D000373 8.8e-07 57.0 46 58.7
A03p36020 Brassica napus HOM05D000425 ORTHO05D000373 8.8e-07 57.0 46 58.7
C03p43670 Brassica napus HOM05D000425 ORTHO05D000373 8.8e-07 57.0 46 58.7
BolC3t16635H Brassica oleracea HOM05D000425 ORTHO05D000373 8.8e-07 57.0 46 58.7
BraA03t12774Z Brassica rapa HOM05D000425 ORTHO05D000373 8.8e-07 57.0 46 58.7
Carub.0004s2118 Capsella rubella HOM05D000425 ORTHO05D000373 8.8e-07 57.0 51 54.9
CARHR211180 Cardamine hirsuta HOM05D000425 ORTHO05D000373 8.8e-07 57.0 50 52.0
Glyma.10G109500 Glycine max HOM05D000425 ORTHO05D000373 8.8e-07 57.0 51 56.9
HanXRQChr08g0218621 Helianthus annuus HOM05D000425 ORTHO05D000373 8.8e-07 57.0 49 55.1
Psat6g093880 Pisum sativum HOM05D000425 ORTHO05D000373 8.8e-07 57.0 51 52.9
HPP92_022709 Vanilla planifolia HOM05D000425 ORTHO05D000722 8.8e-07 57.0 52 55.8
AL6G11400 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 1.1e-06 56.6 50 48.0
arahy.Tifrunner.gnm1.ann1.N0MV1J Arachis hypogaea HOM05D000425 ORTHO05D000373 1.1e-06 56.6 51 51.0
Lsat_1_v5_gn_8_20561 Lactuca sativa HOM05D000425 ORTHO05D000373 1.1e-06 56.6 79 36.7
Lalb_Chr03g0036411 Lupinus albus HOM05D000425 ORTHO05D000373 1.1e-06 56.6 52 48.1
Zm00001eb087950 Zea mays HOM05D000425 ORTHO05D000373 1.1e-06 56.6 62 53.2
AT5G02180 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 1.5e-06 56.2 50 54.0
Carub.0006s0101 Capsella rubella HOM05D000425 ORTHO05D000373 1.5e-06 56.2 50 50.0
Glyma.02G160900 Glycine max HOM05D000425 ORTHO05D000373 1.5e-06 56.2 51 56.9
HanXRQChr07g0195031 Helianthus annuus HOM05D000425 ORTHO05D000373 2.0e-06 55.8 53 50.9
Aqoxy2G02278 Aquilegia oxysepala HOM05D000425 ORTHO05D000373 2.6e-06 55.5 48 50.0
AT5G02170 Arabidopsis thaliana HOM05D000425 ORTHO05D000373 2.6e-06 55.5 50 46.0
BraA10t45373Z Brassica rapa HOM05D000425 ORTHO05D000373 2.6e-06 55.5 50 54.0
Prupe.6G258200 Prunus persica HOM05D000425 ORTHO05D000373 2.6e-06 55.5 50 48.0
A10p33430 Brassica napus HOM05D000425 ORTHO05D000373 3.3e-06 55.1 50 52.0
CARHR211190 Cardamine hirsuta HOM05D000425 ORTHO05D000373 3.3e-06 55.1 50 46.0
Psat6g181960 Pisum sativum HOM05D000425 ORTHO05D000373 3.3e-06 55.1 51 51.0
AL6G11410 Arabidopsis lyrata HOM05D000425 ORTHO05D000373 4.4e-06 54.7 50 52.0
Os02g0101000 Oryza sativa ssp. japonica HOM05D000425 ORTHO05D000373 5.7e-06 54.3 50 54.0
C09p74330 Brassica napus HOM05D000425 ORTHO05D000373 7.4e-06 53.9 50 52.0
Carub.0006s0102 Capsella rubella HOM05D000425 ORTHO05D000373 7.4e-06 53.9 50 52.0
Sp6g40260 Schrenkiella parvula HOM05D000425 ORTHO05D000373 7.4e-06 53.9 50 52.0
arahy.Tifrunner.gnm1.ann1.JR6N4B Arachis hypogaea HOM05D000425 ORTHO05D000373 9.7e-06 53.5 46 58.7
BcaB01g06217 Brassica carinata HOM05D000425 ORTHO05D000373 9.7e-06 53.5 50 44.0
A03p00570 Brassica napus HOM05D000425 ORTHO05D000373 9.7e-06 53.5 50 44.0
BolC9t60167H Brassica oleracea HOM05D000425 ORTHO05D000373 9.7e-06 53.5 50 52.0
Medtr1g050325 Medicago truncatula HOM05D000425 ORTHO05D000373 9.7e-06 53.5 51 49.0
THA.LOC104816260 Tarenaya hassleriana HOM05D000425 ORTHO05D000373 9.7e-06 53.5 47 53.2
Zm00001eb278120 Zea mays HOM05D000425 ORTHO05D000373 9.7e-06 53.5 50 54.0


User provided reference genes

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