Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund04069 Selenicereus undatus HOM05D003843 ORTHO05D004646 4.7e-146 521.2 258 100.0
AUR62041414 Chenopodium quinoa HOM05D003843 ORTHO05D004646 5.0e-100 368.2 227 84.6
AUR62033585 Chenopodium quinoa HOM05D003843 ORTHO05D004646 8.6e-100 367.5 225 84.9
EL10Ac7g16998 Beta vulgaris HOM05D003843 ORTHO05D004646 1.1e-99 367.1 227 84.1
Nn7g37169 Nelumbo nucifera HOM05D003843 ORTHO05D004646 1.4e-97 360.1 227 83.3
Sabra09G0011400 Salix brachista HOM05D003843 ORTHO05D004646 3.1e-97 359.0 227 82.8
Sabra16G0132300 Salix brachista HOM05D003843 ORTHO05D004646 4.0e-97 358.6 227 82.8
Potri.009G020900 Populus trichocarpa HOM05D003843 ORTHO05D004646 8.9e-97 357.5 227 82.8
Cpa.g.sc84.81 Carica papaya HOM05D003843 ORTHO05D004646 1.2e-96 357.1 227 82.4
Gohir.A09G107400 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.2e-96 357.1 227 82.8
Gohir.D09G104200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 1.2e-96 357.1 227 82.8
Gorai.006G121500 Gossypium raimondii HOM05D003843 ORTHO05D004646 1.2e-96 357.1 227 82.8
Rhsim13G0201300 Rhododendron simsii HOM05D003843 ORTHO05D004646 1.2e-96 357.1 227 82.4
Ciclev10015276m.g Citrus clementina HOM05D003843 ORTHO05D004646 1.5e-96 356.7 227 82.4
Sc20g0005970 Simmondsia chinensis HOM05D003843 ORTHO05D004646 2.0e-96 356.3 227 81.9
Sopen11g024630 Solanum pennellii HOM05D003843 ORTHO05D004646 2.0e-96 356.3 227 81.9
TAR623G0430 Trochodendron aralioides HOM05D003843 ORTHO05D004646 2.0e-96 356.3 227 82.4
Os01g0279200 Oryza sativa ssp. japonica HOM05D003843 ORTHO05D004646 2.6e-96 355.9 227 81.5
Potri.001G222700 Populus trichocarpa HOM05D003843 ORTHO05D004646 2.6e-96 355.9 227 82.4
Lj2C938G6 Lonicera japonica HOM05D003843 ORTHO05D004646 4.4e-96 355.1 227 81.9
Thecc.09G256000 Theobroma cacao HOM05D003843 ORTHO05D004646 4.4e-96 355.1 227 81.9
MD11G1176300 Malus domestica HOM05D003843 ORTHO05D004646 7.5e-96 354.4 227 81.9
Manes.01G175000 Manihot esculenta HOM05D003843 ORTHO05D004646 7.5e-96 354.4 227 81.9
HanXRQChr04g0125421 Helianthus annuus HOM05D003843 ORTHO05D004646 9.8e-96 354.0 227 81.5
THA.LOC104800481 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 9.8e-96 354.0 227 81.9
Actinidia07000 Actinidia chinensis HOM05D003843 ORTHO05D004646 1.3e-95 353.6 227 81.1
CSS0016417 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 1.3e-95 353.6 227 81.5
CSS0043612 Camellia sinensis var. sinensis HOM05D003843 ORTHO05D004646 1.3e-95 353.6 227 81.5
Solyc11g062430.2 Solanum lycopersicum HOM05D003843 ORTHO05D004646 1.3e-95 353.6 227 81.5
PSO339G6626 Papaver somniferum HOM05D003843 ORTHO05D004646 1.7e-95 353.2 227 80.6
PSO384G3915 Papaver somniferum HOM05D003843 ORTHO05D004646 1.7e-95 353.2 227 80.6
TWI75G1397 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.7e-95 353.2 227 81.9
ECA236G0656 Erigeron canadensis HOM05D003843 ORTHO05D004646 2.2e-95 352.8 227 81.1
Eucgr.B03772 Eucalyptus grandis HOM05D003843 ORTHO05D004646 2.2e-95 352.8 227 81.1
Gohir.A07G118200 Gossypium hirsutum HOM05D003843 ORTHO05D004646 2.2e-95 352.8 227 81.1
Gohir.D07G122600 Gossypium hirsutum HOM05D003843 ORTHO05D004646 2.2e-95 352.8 227 81.1
Nitab4.5_0000492g0220 Nicotiana tabacum HOM05D003843 ORTHO05D004646 2.2e-95 352.8 227 81.1
Nitab4.5_0008505g0020 Nicotiana tabacum HOM05D003843 ORTHO05D004646 2.2e-95 352.8 227 81.1
Atru.chr3.2831 Acer truncatum HOM05D003843 ORTHO05D004646 3.7e-95 352.1 227 81.5
MELO3C014699.2 Cucumis melo HOM05D003843 ORTHO05D004646 3.7e-95 352.1 227 81.5
Peaxi162Scf00032g02619 Petunia axillaris HOM05D003843 ORTHO05D004646 3.7e-95 352.1 227 80.6
Cc00_g24230 Coffea canephora HOM05D003843 ORTHO05D004646 6.4e-95 351.3 227 80.2
RcHm_v2.0_Chr5g0050051 Rosa chinensis HOM05D003843 ORTHO05D004646 6.4e-95 351.3 227 81.1
Gorai.001G132400 Gossypium raimondii HOM05D003843 ORTHO05D004646 8.3e-95 350.9 227 80.6
MD00G1108200 Malus domestica HOM05D003843 ORTHO05D004646 8.3e-95 350.9 227 81.1
Zm00001eb128990 Zea mays HOM05D003843 ORTHO05D004646 8.3e-95 350.9 227 80.6
Duzib168G0367 Durio zibethinus HOM05D003843 ORTHO05D004646 1.1e-94 350.5 227 80.6
Manes.02G133500 Manihot esculenta HOM05D003843 ORTHO05D004646 1.1e-94 350.5 227 80.6
ClCG02G024160 Citrullus lanatus HOM05D003843 ORTHO05D004646 1.4e-94 350.1 227 81.1
PGR102G1130 Punica granatum HOM05D003843 ORTHO05D004646 1.4e-94 350.1 227 80.6
RcHm_v2.0_Chr4g0435421 Rosa chinensis HOM05D003843 ORTHO05D004646 1.9e-94 349.7 227 79.7
Hund19273 Selenicereus undatus HOM05D003843 ORTHO05D004646 1.9e-94 349.7 227 79.3
GSVIVG01025835001 Vitis vinifera HOM05D003843 ORTHO05D004646 1.9e-94 349.7 224 82.1
SGA_v2.0_scaffold26G11383 Striga asiatica HOM05D003843 ORTHO05D004646 2.4e-94 349.4 227 79.7
SGA_v2.0_scaffold3G01428 Striga asiatica HOM05D003843 ORTHO05D004646 2.4e-94 349.4 227 79.7
Migut.N02389 Erythranthe guttata HOM05D003843 ORTHO05D004646 3.2e-94 349.0 227 79.7
Duzib150G0366 Durio zibethinus HOM05D003843 ORTHO05D004646 4.1e-94 348.6 227 81.1
HanXRQChr06g0178281 Helianthus annuus HOM05D003843 ORTHO05D004646 4.1e-94 348.6 227 80.6
DCAR_013515 Daucus carota HOM05D003843 ORTHO05D004646 5.4e-94 348.2 230 78.7
MSTRG.21332 Avicennia marina HOM05D003843 ORTHO05D004646 7.1e-94 347.8 227 80.2
Solyc01g008840.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 9.2e-94 347.4 227 79.3
THA.LOC104826467 Tarenaya hassleriana HOM05D003843 ORTHO05D004646 9.2e-94 347.4 227 79.7
Aqoxy2G00042 Aquilegia oxysepala HOM05D003843 ORTHO05D004646 1.2e-93 347.1 227 79.3
PGSC0003DMG400022712 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.2e-93 347.1 227 79.3
PGSC0003DMG400032509 Solanum tuberosum HOM05D003843 ORTHO05D004646 1.2e-93 347.1 227 80.2
Hma1.2p1_2801F.1_g328800 Hydrangea macrophylla HOM05D003843 ORTHO05D004646 1.6e-93 346.7 223 81.2
Phvul.001G102200 Phaseolus vulgaris HOM05D003843 ORTHO05D004646 2.1e-93 346.3 227 80.6
Sopen10g031650 Solanum pennellii HOM05D003843 ORTHO05D004646 2.1e-93 346.3 227 79.3
PGSC0003DMG400028109 Solanum tuberosum HOM05D003843 ORTHO05D004646 2.1e-93 346.3 227 79.3
VMungo1383G3260 Vigna mungo HOM05D003843 ORTHO05D004646 2.1e-93 346.3 227 80.6
CDE07G0877 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 2.7e-93 345.9 227 79.3
Peaxi162Scf00791g00019 Petunia axillaris HOM05D003843 ORTHO05D004646 2.7e-93 345.9 224 80.4
ATR1096G029 Amborella trichopoda HOM05D003843 ORTHO05D004646 3.5e-93 345.5 221 80.5
DCAR_020626 Daucus carota HOM05D003843 ORTHO05D004646 3.5e-93 345.5 227 79.7
Lalb_Chr14g0365261 Lupinus albus HOM05D003843 ORTHO05D004646 3.5e-93 345.5 227 80.2
Nitab4.5_0000718g0260 Nicotiana tabacum HOM05D003843 ORTHO05D004646 3.5e-93 345.5 225 80.4
arahy.Tifrunner.gnm1.ann1.286ZLS Arachis hypogaea HOM05D003843 ORTHO05D004646 4.6e-93 345.1 227 80.2
arahy.Tifrunner.gnm1.ann1.66YQP5 Arachis hypogaea HOM05D003843 ORTHO05D004646 4.6e-93 345.1 227 80.2
Ca_03426_v3 Cicer arietinum L. HOM05D003843 ORTHO05D004646 4.6e-93 345.1 227 80.2
FvH4_4g27570 Fragaria vesca HOM05D003843 ORTHO05D004646 6.0e-93 344.7 227 79.3
FAN07G2602 Fragaria x ananassa HOM05D003843 ORTHO05D004646 6.0e-93 344.7 227 79.3
FAN12G3037 Fragaria x ananassa HOM05D003843 ORTHO05D004646 6.0e-93 344.7 227 79.3
FAN12G3698 Fragaria x ananassa HOM05D003843 ORTHO05D004646 6.0e-93 344.7 227 79.3
Glyma.03G004400 Glycine max HOM05D003843 ORTHO05D004646 6.0e-93 344.7 227 80.2
Lalb_Chr24g0400701 Lupinus albus HOM05D003843 ORTHO05D004646 6.0e-93 344.7 227 80.2
Sed0007264 Sechium edule HOM05D003843 ORTHO05D004646 7.8e-93 344.4 227 79.7
CsaV3_4G017290 Cucumis sativus L. HOM05D003843 ORTHO05D004646 1.0e-92 344.0 237 78.1
CsaV3_UNG234370 Cucumis sativus L. HOM05D003843 ORTHO05D004646 1.0e-92 344.0 237 78.1
Lj1g0018589 Lotus japonicus HOM05D003843 ORTHO05D004646 1.0e-92 344.0 227 79.7
QL07p015316 Quercus lobata HOM05D003843 ORTHO05D004646 1.0e-92 344.0 227 79.3
arahy.Tifrunner.gnm1.ann1.802V4W Arachis hypogaea HOM05D003843 ORTHO05D004646 1.3e-92 343.6 227 79.7
arahy.Tifrunner.gnm1.ann1.CI8U65 Arachis hypogaea HOM05D003843 ORTHO05D004646 1.3e-92 343.6 227 79.7
Aa31LG5G8390 Aethionema arabicum HOM05D003843 ORTHO05D004646 1.7e-92 343.2 224 80.4
QL07p015334 Quercus lobata HOM05D003843 ORTHO05D004646 1.7e-92 343.2 227 79.7
CANSAT64G0238 Cannabis sativa HOM05D003843 ORTHO05D004646 2.3e-92 342.8 224 79.9
CAN.G96.3 Capsicum annuum HOM05D003843 ORTHO05D004646 2.3e-92 342.8 224 79.9
Haze_20342 Corylus avellana HOM05D003843 ORTHO05D004646 2.3e-92 342.8 246 74.4
CAN.G128.106 Capsicum annuum HOM05D003843 ORTHO05D004646 3.0e-92 342.4 224 79.0
Prupe.6G156800 Prunus persica HOM05D003843 ORTHO05D004646 3.9e-92 342.0 227 80.6
vmacro04105 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 3.9e-92 342.0 227 79.3
CiPaw.09G163100 Carya illinoinensis HOM05D003843 ORTHO05D004646 5.1e-92 341.7 227 79.3
Medtr7g087530 Medicago truncatula HOM05D003843 ORTHO05D004646 5.1e-92 341.7 227 78.9
Nitab4.5_0005212g0010 Nicotiana tabacum HOM05D003843 ORTHO05D004646 1.1e-91 340.5 225 79.6
TPR.G23658 Trifolium pratense HOM05D003843 ORTHO05D004646 2.5e-91 339.3 227 78.9
Pp3c9_2060 Physcomitrium patens HOM05D003843 ORTHO05D004646 3.3e-91 339.0 227 77.5
Psat3g083920 Pisum sativum HOM05D003843 ORTHO05D004646 3.3e-91 339.0 227 78.4
Pp3c17_10150 Physcomitrium patens HOM05D003843 ORTHO05D004646 4.3e-91 338.6 227 77.5
Glyma.05G079400 Glycine max HOM05D003843 ORTHO05D004646 5.6e-91 338.2 227 77.5
Thhalv10001988m.g Eutrema salsugineum HOM05D003843 ORTHO05D004646 7.3e-91 337.8 227 77.5
AL4G20470 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 1.2e-90 337.0 227 78.0
Glyma.19G072400 Glycine max HOM05D003843 ORTHO05D004646 1.2e-90 337.0 227 77.1
Sp4g08320 Schrenkiella parvula HOM05D003843 ORTHO05D004646 1.2e-90 337.0 227 77.1
CARHR119240 Cardamine hirsuta HOM05D003843 ORTHO05D004646 2.8e-90 335.9 227 77.5
Mapoly0063s0071 Marchantia polymorpha HOM05D003843 ORTHO05D004646 2.8e-90 335.9 224 78.1
Pp3c15_2200 Physcomitrium patens HOM05D003843 ORTHO05D004646 3.6e-90 335.5 227 77.5
vmacro14282 Vaccinium macrocarpon HOM05D003843 ORTHO05D004646 3.6e-90 335.5 225 79.6
Solyc10g081150.3 Solanum lycopersicum HOM05D003843 ORTHO05D004646 6.2e-90 334.7 221 78.3
AT2G26990 Arabidopsis thaliana HOM05D003843 ORTHO05D004646 8.1e-90 334.3 227 77.5
CsaV3_4G023170 Cucumis sativus L. HOM05D003843 ORTHO05D004646 1.4e-89 333.6 231 77.5
Glyma.19G121500 Glycine max HOM05D003843 ORTHO05D004646 1.8e-89 333.2 221 79.2
Carub.0004s0747 Capsella rubella HOM05D003843 ORTHO05D004646 2.3e-89 332.8 227 77.5
AagrBONN_evm.TU.Sc2ySwM_344.3619 Anthoceros agrestis HOM05D003843 ORTHO05D004646 5.2e-89 331.6 227 76.7
BcaB01g03038 Brassica carinata HOM05D003843 ORTHO05D004646 5.2e-89 331.6 227 76.7
SMO117G0130 Selaginella moellendorffii HOM05D003843 ORTHO05D004646 2.0e-88 329.7 227 74.9
CAN.G1332.3 Capsicum annuum HOM05D003843 ORTHO05D004646 2.6e-88 329.3 225 76.0
BcaB02g10062 Brassica carinata HOM05D003843 ORTHO05D004646 3.4e-88 328.9 227 75.8
BcaC02g10850 Brassica carinata HOM05D003843 ORTHO05D004646 4.4e-88 328.6 227 76.2
A07p17930 Brassica napus HOM05D003843 ORTHO05D004646 4.4e-88 328.6 227 76.2
C04p24530 Brassica napus HOM05D003843 ORTHO05D004646 4.4e-88 328.6 227 76.2
C03p32130 Brassica napus HOM05D003843 ORTHO05D004646 9.9e-88 327.4 227 75.8
Sed0025468 Sechium edule HOM05D003843 ORTHO05D004646 1.3e-87 327.0 227 76.7
BraA07t29511Z Brassica rapa HOM05D003843 ORTHO05D004646 4.9e-87 325.1 224 76.3
Oeu013457.1 Olea europaea HOM05D003843 ORTHO05D004646 2.4e-86 322.8 230 73.0
A03p26810 Brassica napus HOM05D003843 ORTHO05D004646 4.1e-86 322.0 224 75.9
BraA03t11892Z Brassica rapa HOM05D003843 ORTHO05D004646 4.1e-86 322.0 224 75.9
BolC4t23951H Brassica oleracea HOM05D003843 ORTHO05D004646 1.6e-85 320.1 221 76.0
MBI19_g17996_MAGBIO Magnolia biondii HOM05D003843 ORTHO05D004646 1.6e-85 320.1 224 76.3
BolC3t15555H Brassica oleracea HOM05D003843 ORTHO05D004646 3.5e-85 318.9 221 75.6
MD03G1163800 Malus domestica HOM05D003843 ORTHO05D004646 4.6e-85 318.5 227 75.8
Lsat_1_v5_gn_8_85240 Lactuca sativa HOM05D003843 ORTHO05D004646 1.7e-84 316.6 221 75.1
SEGI_33472 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 6.6e-84 314.7 227 71.4
HPP92_012450 Vanilla planifolia HOM05D003843 ORTHO05D004646 1.1e-83 313.9 208 78.8
CBR_g24102 Chara braunii HOM05D003843 ORTHO05D004646 6.2e-82 308.1 225 72.9
BcaC01g04918 Brassica carinata HOM05D003843 ORTHO05D004646 4.4e-80 302.0 227 71.4
CARHR063930 Cardamine hirsuta HOM05D003843 ORTHO05D004646 1.6e-77 293.5 229 69.4
Zm00001eb332660 Zea mays HOM05D003843 ORTHO05D004646 1.6e-77 293.5 211 74.4
Dinv12305 Davidia involucrata HOM05D003843 ORTHO05D004646 1.3e-76 290.4 227 70.9
Sopen01g004350 Solanum pennellii HOM05D003843 ORTHO05D004646 2.5e-75 286.2 192 77.1
SEGI_33516 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 6.2e-74 281.6 192 76.0
COL.COLO4_24925 Corchorus olitorius HOM05D003843 ORTHO05D004646 4.4e-72 275.4 195 73.8
EL10Ac1g01678 Beta vulgaris HOM05D003843 ORTHO05D004646 4.2e-70 268.9 134 97.0
TWI79G0192 Tripterygium wilfordii HOM05D003843 ORTHO05D004646 1.9e-67 260.0 174 78.2
Haze_20346 Corylus avellana HOM05D003843 ORTHO05D004646 4.0e-65 252.3 134 91.8
MCO01G792 Micromonas commoda HOM05D003843 ORTHO05D004646 1.7e-63 246.9 225 58.2
PRCOL_00002476 Prasinoderma coloniale HOM05D003843 ORTHO05D004646 8.4e-63 244.6 223 59.2
Cre01.g030800 Chlamydomonas reinhardtii HOM05D003843 ORTHO05D004646 2.7e-61 239.6 233 55.8
SHI24965 Sapria himalayana HOM05D003843 ORTHO05D004646 2.7e-61 239.6 130 88.5
Haze_26275 Corylus avellana HOM05D003843 ORTHO05D004646 3.3e-59 232.6 229 55.0
Rhsim13G0197000 Rhododendron simsii HOM05D003843 ORTHO05D004646 6.0e-53 211.8 224 54.5
CDE04G2865 Ceratophyllum demersum HOM05D003843 ORTHO05D004646 5.9e-48 195.3 143 72.7
VMungo1309G2340 Vigna mungo HOM05D003843 ORTHO05D004646 7.2e-46 188.3 137 74.5
Cfa024421 Carpinus fangiana HOM05D003843 ORTHO05D004646 5.1e-44 182.2 204 48.0
AL8G39810 Arabidopsis lyrata HOM05D003843 ORTHO05D004646 2.6e-40 169.9 230 43.5
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 8.0e-21 105.1 212 34.9
SEGI_37910 Sequoiadendron giganteum HOM05D003843 ORTHO05D004646 2.3e-20 103.6 54 90.7
SHI24968 Sapria himalayana HOM05D003843 ORTHO05D004646 6.5e-15 85.5 49 85.7
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 9.4e-14 81.6 188 33.0
ClCG10G014090 Citrullus lanatus HOM05D006109 ORTHO05D007647 8.0e-13 78.6 67 67.2
Lsat_1_v5_gn_4_91020 Lactuca sativa HOM05D000919 ORTHO05D001187 2.4e-09 67.0 40 75.0
BcaB04g18969 Brassica carinata HOM05D003843 ORTHO05D092575 1.2e-08 64.7 50 56.0
BcaC01g03723 Brassica carinata HOM05D003843 ORTHO05D091273 1.6e-08 64.3 137 35.0


User provided reference genes

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