Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03985 Selenicereus undatus HOM05D005004 ORTHO05D006097 3.1e-77 292.0 172 100.0
Sc20g0006290 Simmondsia chinensis HOM05D005004 ORTHO05D006097 1.2e-41 173.7 142 64.8
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 5.1e-40 168.3 142 73.9
Nitab4.5_0004873g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 2.5e-39 166.0 140 65.0
Nitab4.5_0000368g0180 Nicotiana tabacum HOM05D005004 ORTHO05D006097 3.3e-39 165.6 140 65.7
Dinv31686 Davidia involucrata HOM05D005004 ORTHO05D006097 9.6e-39 164.1 146 63.7
Nitab4.5_0003512g0070 Nicotiana tabacum HOM05D005004 ORTHO05D006097 1.3e-38 163.7 132 67.4
Sopen01g043930 Solanum pennellii HOM05D005004 ORTHO05D006097 1.3e-38 163.7 140 66.4
Solyc01g100410.3 Solanum lycopersicum HOM05D005004 ORTHO05D006097 1.6e-38 163.3 140 66.4
PGSC0003DMG403002803 Solanum tuberosum HOM05D005004 ORTHO05D006097 1.6e-38 163.3 140 66.4
CAN.G1164.37 Capsicum annuum HOM05D005004 ORTHO05D006097 6.2e-38 161.4 140 62.9
unitig_899.g15202 Utricularia gibba HOM05D005004 ORTHO05D006097 8.2e-38 161.0 143 61.5
Peaxi162Scf00673g00319 Petunia axillaris HOM05D005004 ORTHO05D006097 1.1e-37 160.6 132 69.7
CAN.G1715.5 Capsicum annuum HOM05D005004 ORTHO05D006097 1.4e-37 160.2 140 70.0
Eucgr.K02041 Eucalyptus grandis HOM05D005004 ORTHO05D006097 1.4e-37 160.2 142 63.4
Eucgr.L03536 Eucalyptus grandis HOM05D005004 ORTHO05D006097 1.4e-37 160.2 142 63.4
SGA_v2.0_scaffold184G39963 Striga asiatica HOM05D005004 ORTHO05D006097 1.4e-37 160.2 140 60.7
Hma1.2p1_0232F.1_g097910 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 2.4e-37 159.5 146 61.6
THA.LOC104826944 Tarenaya hassleriana HOM05D005004 ORTHO05D006097 2.4e-37 159.5 154 59.7
Eucgr.C01891 Eucalyptus grandis HOM05D005004 ORTHO05D006097 3.1e-37 159.1 142 62.7
Dinv21208 Davidia involucrata HOM05D005004 ORTHO05D006097 4.0e-37 158.7 148 60.8
FvH4_6g18690 Fragaria vesca HOM05D005004 ORTHO05D006097 5.3e-37 158.3 141 61.7
FAN05G0382 Fragaria x ananassa HOM05D005004 ORTHO05D006097 5.3e-37 158.3 141 61.7
FAN05G5799 Fragaria x ananassa HOM05D005004 ORTHO05D006097 5.3e-37 158.3 141 61.7
FAN14G5527 Fragaria x ananassa HOM05D005004 ORTHO05D006097 5.3e-37 158.3 141 61.7
TWI77G0413 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 6.9e-37 157.9 141 61.7
Actinidia07927 Actinidia chinensis HOM05D005004 ORTHO05D006097 9.0e-37 157.5 139 69.1
Gorai.002G158400 Gossypium raimondii HOM05D005004 ORTHO05D006097 9.0e-37 157.5 144 62.5
SalBow5G1155 Salvia bowleyana HOM05D005004 ORTHO05D006097 9.0e-37 157.5 142 62.7
Aa31LG1G21370 Aethionema arabicum HOM05D005004 ORTHO05D006097 1.2e-36 157.1 150 64.0
FAN09G0264 Fragaria x ananassa HOM05D005004 ORTHO05D006097 1.2e-36 157.1 141 66.0
Cpa.g.sc5.20 Carica papaya HOM05D005004 ORTHO05D006097 2.6e-36 156.0 146 62.3
Ciclev10012954m.g Citrus clementina HOM05D005004 ORTHO05D006097 2.6e-36 156.0 145 62.1
COL.COLO4_29735 Corchorus olitorius HOM05D005004 ORTHO05D006097 2.6e-36 156.0 145 60.7
Gohir.D01G127800 Gossypium hirsutum HOM05D005004 ORTHO05D006097 2.6e-36 156.0 144 61.8
Atru.chr8.1540 Acer truncatum HOM05D005004 ORTHO05D006097 3.4e-36 155.6 143 64.3
Duzib106G1905 Durio zibethinus HOM05D005004 ORTHO05D006097 3.4e-36 155.6 145 60.0
Duzib093G1830 Durio zibethinus HOM05D005004 ORTHO05D006097 4.5e-36 155.2 145 60.0
FAN02G1574 Fragaria x ananassa HOM05D005004 ORTHO05D006097 5.8e-36 154.8 144 61.8
Gohir.A01G138100 Gossypium hirsutum HOM05D005004 ORTHO05D006097 5.8e-36 154.8 145 61.4
HanXRQChr15g0491011 Helianthus annuus HOM05D005004 ORTHO05D006097 7.6e-36 154.5 147 57.8
CSS0009320 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 1.0e-35 154.1 142 62.0
Haze_19610 Corylus avellana HOM05D005004 ORTHO05D006097 1.3e-35 153.7 145 62.1
Gorai.002G239900 Gossypium raimondii HOM05D005004 ORTHO05D006097 1.3e-35 153.7 145 58.6
Thecc.05G089000 Theobroma cacao HOM05D005004 ORTHO05D006097 1.3e-35 153.7 145 58.6
MSTRG.10365 Avicennia marina HOM05D005004 ORTHO05D006097 1.7e-35 153.3 143 60.8
RcHm_v2.0_Chr3g0473661 Rosa chinensis HOM05D005004 ORTHO05D006097 1.7e-35 153.3 141 65.2
TAR365G0253 Trochodendron aralioides HOM05D005004 ORTHO05D006097 2.2e-35 152.9 145 57.9
Migut.L01778 Erythranthe guttata HOM05D005004 ORTHO05D006097 2.9e-35 152.5 143 58.0
Gohir.D01G195700 Gossypium hirsutum HOM05D005004 ORTHO05D006097 2.9e-35 152.5 145 58.6
CANSAT80G1737 Cannabis sativa HOM05D005004 ORTHO05D006097 3.8e-35 152.1 141 58.9
Gohir.A01G206300 Gossypium hirsutum HOM05D005004 ORTHO05D006097 4.9e-35 151.8 145 58.6
DCAR_009165 Daucus carota HOM05D005004 ORTHO05D006097 8.4e-35 151.0 147 57.8
HanXRQChr17g0554781 Helianthus annuus HOM05D005004 ORTHO05D006097 1.4e-34 150.2 147 57.8
PGR142G4351 Punica granatum HOM05D005004 ORTHO05D006097 1.4e-34 150.2 145 68.3
TWI53G1915 Tripterygium wilfordii HOM05D005004 ORTHO05D006097 1.4e-34 150.2 141 59.6
CSS0031559 Camellia sinensis var. sinensis HOM05D005004 ORTHO05D006097 1.9e-34 149.8 145 60.0
Carub.0006s0286 Capsella rubella HOM05D005004 ORTHO05D006097 1.9e-34 149.8 150 55.3
SGA_v2.0_scaffold35G14070 Striga asiatica HOM05D005004 ORTHO05D006097 1.9e-34 149.8 152 57.9
QL07p038766 Quercus lobata HOM05D005004 ORTHO05D006097 2.5e-34 149.4 145 58.6
BolC2t06126H Brassica oleracea HOM05D005004 ORTHO05D006097 3.2e-34 149.1 150 53.3
Thhalv10014896m.g Eutrema salsugineum HOM05D005004 ORTHO05D006097 3.2e-34 149.1 151 53.6
MD16G1269100 Malus domestica HOM05D005004 ORTHO05D006097 4.2e-34 148.7 140 62.1
GSVIVG01033842001 Vitis vinifera HOM05D005004 ORTHO05D006097 4.2e-34 148.7 147 58.5
AL6G13490 Arabidopsis lyrata HOM05D005004 ORTHO05D006097 5.5e-34 148.3 150 59.3
QL07p039017 Quercus lobata HOM05D005004 ORTHO05D006097 7.1e-34 147.9 145 57.9
Cc06_g05740 Coffea canephora HOM05D005004 ORTHO05D006097 9.3e-34 147.5 147 64.6
MBI17_g08354_MAGBIO Magnolia biondii HOM05D005004 ORTHO05D006097 9.3e-34 147.5 144 56.9
arahy.Tifrunner.gnm1.ann1.8NC760 Arachis hypogaea HOM05D005004 ORTHO05D006097 1.2e-33 147.1 145 56.6
BcaC06g32094 Brassica carinata HOM05D005004 ORTHO05D006097 1.6e-33 146.7 150 54.7
Manes.08G025200 Manihot esculenta HOM05D005004 ORTHO05D006097 1.6e-33 146.7 141 57.4
CARHR209350 Cardamine hirsuta HOM05D005004 ORTHO05D006097 2.1e-33 146.4 152 53.9
Actinidia05431 Actinidia chinensis HOM05D005004 ORTHO05D006097 2.7e-33 146.0 153 57.5
AT5G03905 Arabidopsis thaliana HOM05D005004 ORTHO05D006097 2.7e-33 146.0 143 55.9
MELO3C020686.2 Cucumis melo HOM05D005004 ORTHO05D006097 3.5e-33 145.6 145 59.3
CsaV3_1G033770 Cucumis sativus L. HOM05D005004 ORTHO05D006097 3.5e-33 145.6 141 58.2
MD06G1040300 Malus domestica HOM05D005004 ORTHO05D006097 3.5e-33 145.6 140 60.7
A10p32210 Brassica napus HOM05D005004 ORTHO05D006097 4.6e-33 145.2 150 58.7
C09p73010 Brassica napus HOM05D005004 ORTHO05D006097 4.6e-33 145.2 150 53.3
BolC9t60036H Brassica oleracea HOM05D005004 ORTHO05D006097 4.6e-33 145.2 150 53.3
BraA10t45264Z Brassica rapa HOM05D005004 ORTHO05D006097 4.6e-33 145.2 150 58.7
Prupe.5G046500 Prunus persica HOM05D005004 ORTHO05D006097 4.6e-33 145.2 140 61.4
BcaB05g21795 Brassica carinata HOM05D005004 ORTHO05D006097 6.0e-33 144.8 156 53.2
Lj1g0020740 Lotus japonicus HOM05D005004 ORTHO05D006097 6.0e-33 144.8 142 59.9
Sp6g38820 Schrenkiella parvula HOM05D005004 ORTHO05D006097 6.0e-33 144.8 155 61.3
Sed0022281 Sechium edule HOM05D005004 ORTHO05D006097 7.9e-33 144.4 141 57.4
BraA02t04792Z Brassica rapa HOM05D005004 ORTHO05D006097 1.3e-32 143.7 150 57.3
Potri.006G084300 Populus trichocarpa HOM05D005004 ORTHO05D006097 1.3e-32 143.7 141 57.4
C02p01610 Brassica napus HOM05D005004 ORTHO05D006097 1.8e-32 143.3 150 50.7
CsaV3_1G013480 Cucumis sativus L. HOM05D005004 ORTHO05D006097 1.8e-32 143.3 141 56.7
Sed0018976 Sechium edule HOM05D005004 ORTHO05D006097 2.3e-32 142.9 141 56.7
ClCG03G002740 Citrullus lanatus HOM05D005004 ORTHO05D006097 3.0e-32 142.5 156 53.8
BcaC03g12976 Brassica carinata HOM05D005004 ORTHO05D006097 3.9e-32 142.1 150 51.3
Rhsim03G0075200 Rhododendron simsii HOM05D005004 ORTHO05D006097 3.9e-32 142.1 167 57.5
CiPaw.09G013900 Carya illinoinensis HOM05D005004 ORTHO05D006097 8.7e-32 141.0 145 58.6
Nn6g34902 Nelumbo nucifera HOM05D005004 ORTHO05D006097 8.7e-32 141.0 145 52.4
Zm00001eb170730 Zea mays HOM05D005004 ORTHO05D006097 8.7e-32 141.0 144 57.6
TAR623G0616 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.1e-31 140.6 145 54.5
EL10Ac7g16917 Beta vulgaris HOM05D005004 ORTHO05D006097 1.9e-31 139.8 79 86.1
Psat3g033320 Pisum sativum HOM05D005004 ORTHO05D006097 1.9e-31 139.8 145 62.1
HPP92_018556 Vanilla planifolia HOM05D005004 ORTHO05D006097 1.9e-31 139.8 150 52.0
ClCG03G001800 Citrullus lanatus HOM05D005004 ORTHO05D006097 7.4e-31 137.9 155 51.6
Lj1g0017616 Lotus japonicus HOM05D005004 ORTHO05D006097 7.4e-31 137.9 141 63.1
Medtr7g104600 Medicago truncatula HOM05D005004 ORTHO05D006097 9.7e-31 137.5 145 57.2
Lalb_Chr25g0288321 Lupinus albus HOM05D005004 ORTHO05D006097 1.3e-30 137.1 145 52.4
Os08g0369700 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 1.3e-30 137.1 90 75.6
TPR.G30035 Trifolium pratense HOM05D005004 ORTHO05D006097 1.3e-30 137.1 145 62.8
ATR0174G014 Amborella trichopoda HOM05D005004 ORTHO05D006097 1.6e-30 136.7 95 71.6
AUR62006181 Chenopodium quinoa HOM05D005004 ORTHO05D006097 3.7e-30 135.6 79 82.3
AUR62028526 Chenopodium quinoa HOM05D005004 ORTHO05D006097 3.7e-30 135.6 87 74.7
CDE02G2337 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 4.8e-30 135.2 90 74.4
Sabra06G0064000 Salix brachista HOM05D005004 ORTHO05D006097 4.8e-30 135.2 160 51.2
Aqoxy5G00209 Aquilegia oxysepala HOM05D005004 ORTHO05D006097 6.3e-30 134.8 144 63.2
Glyma.13G153600 Glycine max HOM05D005004 ORTHO05D006097 6.3e-30 134.8 141 53.2
Lalb_Chr20g0111711 Lupinus albus HOM05D005004 ORTHO05D006097 8.2e-30 134.4 145 62.8
TAR369G1152 Trochodendron aralioides HOM05D005004 ORTHO05D006097 1.1e-29 134.0 90 75.6
VMungo1215G1361 Vigna mungo HOM05D005004 ORTHO05D006097 1.1e-29 134.0 141 51.1
Phvul.003G095500 Phaseolus vulgaris HOM05D005004 ORTHO05D006097 1.8e-29 133.3 144 52.1
SEGI_14769 Sequoiadendron giganteum HOM05D005004 ORTHO05D006097 1.8e-29 133.3 91 70.3
Lj2A137T29 Lonicera japonica HOM05D005004 ORTHO05D006097 4.1e-29 132.1 82 79.3
PSO384G4260 Papaver somniferum HOM05D005004 ORTHO05D006097 2.6e-28 129.4 141 59.6
PSO339G3768 Papaver somniferum HOM05D005004 ORTHO05D006097 4.5e-28 128.6 88 69.3
CDE04G1264 Ceratophyllum demersum HOM05D005004 ORTHO05D006097 7.6e-28 127.9 90 71.1
arahy.Tifrunner.gnm1.ann1.E5K2FZ Arachis hypogaea HOM05D005004 ORTHO05D006097 1.7e-27 126.7 174 47.7
BcaC03g12974 Brassica carinata HOM05D007309 ORTHO05D006097 2.2e-27 126.3 85 72.9
vmacro07408 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 2.2e-27 126.3 86 73.3
Cfa016606 Carpinus fangiana HOM05D005004 ORTHO05D006097 8.5e-27 124.4 79 78.5
Hma1.2p1_0580F.1_g182880 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 8.5e-27 124.4 91 72.5
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 1.1e-26 124.0 131 55.0
Aa31LG3G2670 Aethionema arabicum HOM05D005004 ORTHO05D006097 3.2e-26 122.5 88 63.6
SalBow5G4790 Salvia bowleyana HOM05D005004 ORTHO05D006097 4.2e-26 122.1 76 80.3
ECA236G3187 Erigeron canadensis HOM05D005004 ORTHO05D006097 1.6e-25 120.2 81 72.8
AagrBONN_evm.TU.Sc2ySwM_228.4176 Anthoceros agrestis HOM05D005004 ORTHO05D006097 4.6e-25 118.6 155 42.6
Zm00001eb042730 Zea mays HOM05D005004 ORTHO05D006097 2.3e-24 116.3 143 47.6
CBR_g27757 Chara braunii HOM05D005004 ORTHO05D006097 8.7e-24 114.4 112 49.1
Mapoly0089s0053 Marchantia polymorpha HOM05D005004 ORTHO05D006097 1.9e-23 113.2 97 56.7
Pp3c3_34710 Physcomitrium patens HOM05D005004 ORTHO05D006097 1.9e-23 113.2 92 58.7
MCO02G129 Micromonas commoda HOM05D005004 ORTHO05D006097 5.7e-23 111.7 94 54.3
Os08g0363800 Oryza sativa ssp. japonica HOM05D005004 ORTHO05D006097 1.7e-22 110.2 68 77.9
SMO171G0092 Selaginella moellendorffii HOM05D005004 ORTHO05D006097 3.1e-21 105.9 81 60.5
Hma1.2p1_3639F.1_g337130 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 6.5e-19 98.2 90 60.0
MSTRG.5844 Avicennia marina HOM05D005004 ORTHO05D006097 3.2e-18 95.9 107 51.4
vmacro08717 Vaccinium macrocarpon HOM05D005004 ORTHO05D006097 7.9e-17 91.3 113 52.2
Glyma.03G195800 Glycine max HOM05D005004 ORTHO05D006097 5.7e-15 85.1 88 54.5
Cre07.g349600 Chlamydomonas reinhardtii HOM05D005004 ORTHO05D006097 1.5e-12 77.0 90 40.0
PRCOL_00000026 Prasinoderma coloniale HOM05D005004 ORTHO05D006097 3.4e-12 75.9 129 35.7
Pp3s30_920 Physcomitrium patens HOM05D002293 ORTHO05D006850 1.9e-10 70.1 94 37.2
Cc06_g20090 Coffea canephora HOM05D005004 ORTHO05D006097 7.2e-10 68.2 74 58.1
Hma1.2p1_0235F.1_g098620 Hydrangea macrophylla HOM05D005004 ORTHO05D012020 1.2e-09 67.4 90 48.9
Haze_27657 Corylus avellana HOM05D005004 ORTHO05D006097 1.6e-09 67.0 86 36.0
Hma1.2p1_0160F.1_g071250 Hydrangea macrophylla HOM05D005004 ORTHO05D006097 3.6e-09 65.9 46 71.7
AagrBONN_evm.TU.Sc2ySwM_362.938 Anthoceros agrestis HOM05D000606 ORTHO05D001265 5.7e-07 58.5 95 31.6


User provided reference genes

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