Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 0.0e+00 1755.0 957 100.0
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 2.2e-294 1015.8 1016 56.1
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 1.9e-293 1012.7 958 58.9
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 7.4e-290 1000.7 1013 55.4
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 3.0e-275 952.2 966 56.2
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 2.4e-248 862.8 967 54.1
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.4e-203 714.1 972 45.9
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 6.5e-201 705.3 979 46.0
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 3.2e-200 703.0 978 44.8
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 6.7e-198 695.3 976 44.1
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 1.2e-194 684.5 973 44.3
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 1.2e-191 674.5 977 43.6
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 2.7e-191 673.3 976 43.3
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 2.7e-191 673.3 983 43.9
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 8.7e-190 668.3 974 43.1
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 9.7e-189 664.8 967 43.2
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 3.1e-187 659.8 977 43.4
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 4.1e-187 659.4 975 43.3
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.5e-186 657.5 976 43.2
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 5.9e-186 655.6 913 44.4
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 5.0e-185 652.5 968 42.1
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 8.5e-185 651.7 940 43.1
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 1.1e-184 651.4 969 42.0
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.4e-184 651.0 959 43.4
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.5e-184 650.2 974 41.9
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 9.4e-184 648.3 977 43.3
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.6e-183 647.5 968 41.9
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 1.6e-183 647.5 977 42.9
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.1e-183 647.1 969 42.1
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 2.1e-183 647.1 969 43.1
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 3.6e-183 646.4 972 41.8
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.3e-181 639.8 973 42.2
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 3.7e-180 636.3 985 42.1
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 1.1e-176 624.8 980 42.0
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 5.2e-174 615.9 970 40.4
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 2.8e-172 610.1 975 40.5
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 2.4e-171 607.1 980 41.3
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 2.9e-169 600.1 951 40.7
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 1.1e-168 598.2 976 40.5
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 2.5e-168 597.0 975 40.1
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 4.2e-168 596.3 975 41.3
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 7.2e-168 595.5 975 41.3
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 3.6e-167 593.2 967 39.6
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 4.7e-167 592.8 971 39.9
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 6.1e-167 592.4 979 40.9
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.2e-165 588.2 971 41.0
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.0e-165 587.4 970 39.7
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 6.3e-164 582.4 981 39.6
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 1.8e-163 580.9 969 40.7
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-163 580.5 977 39.6
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-163 580.5 977 39.6
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 4.1e-163 579.7 980 39.9
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 7.0e-163 578.9 972 39.1
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 1.6e-162 577.8 678 51.5
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 2.0e-162 577.4 974 40.8
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 4.5e-162 576.2 945 41.1
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 1.3e-161 574.7 980 40.9
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 8.5e-161 572.0 976 38.6
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 1.5e-160 571.2 978 38.9
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 9.4e-160 568.5 918 41.2
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 2.7e-159 567.0 910 41.8
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.0e-158 565.1 982 39.9
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.5e-157 561.2 984 38.1
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.5e-157 561.2 950 39.1
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 9.8e-157 558.5 982 39.8
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 2.2e-156 557.4 1010 38.8
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 1.1e-155 555.1 975 39.2
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.4e-155 554.7 930 40.0
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 5.4e-155 552.7 975 39.5
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 5.4e-155 552.7 953 39.3
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 5.4e-155 552.7 980 38.6
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 7.0e-155 552.4 983 39.3
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 2.0e-154 550.8 980 39.5
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 4.5e-154 549.7 959 38.6
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 1.9e-152 544.3 1012 38.4
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 7.2e-152 542.3 964 39.5
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 4.9e-148 529.6 943 36.8
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 7.0e-147 525.8 973 36.9
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.3e-145 520.8 947 38.2
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.0e-145 519.6 945 38.9
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.6e-145 519.2 947 38.1
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 8.0e-143 512.3 976 37.6
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 1.0e-142 511.9 852 40.3
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 4.9e-140 503.1 955 36.4
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 4.9e-140 503.1 975 37.9
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.9e-136 491.1 1043 34.4
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.6e-135 488.0 970 37.9
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 6.8e-134 482.6 908 36.6
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 3.4e-133 480.3 980 35.3
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.1e-128 465.3 911 35.5
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 3.7e-124 450.3 903 36.2
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.9e-123 448.0 905 34.0
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 4.1e-123 446.8 723 40.5
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 4.6e-122 443.4 942 34.5
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.5e-120 438.3 977 34.4
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 1.5e-117 428.3 973 34.1
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 3.4e-117 427.2 981 32.9
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 1.3e-116 425.2 764 39.1
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 4.9e-116 423.3 958 35.1
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 1.3e-113 415.2 947 33.6
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 8.6e-113 412.5 914 34.4
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 2.5e-112 411.0 968 33.2
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 3.3e-112 410.6 954 33.6
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 6.2e-103 379.8 993 32.8
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 1.1e-102 379.0 994 33.2
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 1.2e-101 375.6 1000 32.2
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 3.4e-101 374.0 993 32.1
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 3.4e-101 374.0 993 32.1
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 7.6e-101 372.9 996 32.0
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 9.9e-101 372.5 991 32.5
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 2.2e-100 371.3 980 32.1
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 2.2e-100 371.3 980 32.1
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.1e-99 369.0 995 32.8
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 4.2e-99 367.1 988 33.1
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 5.4e-99 366.7 960 31.2
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 5.1e-97 360.1 997 31.9
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 2.5e-96 357.8 925 31.5
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 7.4e-96 356.3 1011 32.6
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 2.2e-92 344.7 1017 32.1
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 6.0e-90 336.7 715 36.1
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 7.9e-90 336.3 924 31.9
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.8e-89 335.1 714 37.1
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 6.0e-82 310.1 991 29.9
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 5.7e-80 303.5 986 28.3
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 1.0e-73 282.7 966 29.8
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 1.0e-68 266.2 911 28.6
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 5.5e-67 260.4 1022 28.4
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 3.2e-59 234.6 1008 26.5
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 5.5e-59 233.8 462 32.9
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.0e-44 186.4 612 30.6
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.8e-38 165.6 180 47.8
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.1e-35 156.4 984 25.3
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 7.2e-35 153.7 212 41.5
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.0e-32 145.6 391 33.2
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 5.7e-32 144.1 256 43.0
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 1.7e-28 132.5 304 33.9
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 1.9e-27 129.0 208 42.3
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 6.8e-25 120.6 224 33.5
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 9.2e-22 110.2 601 25.3
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 3.9e-20 104.8 330 31.2
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 5.8e-16 90.9 225 32.0
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 3.0e-12 78.6 642 23.4
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 5.0e-12 77.8 138 41.3
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 1.1e-11 76.6 152 38.2
Nn1g03080 Nelumbo nucifera HOM05D002769 ORTHO05D003160 1.6e-10 72.8 428 25.0
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 6.2e-10 70.9 407 26.3
ATR0759G019 Amborella trichopoda HOM05D002769 ORTHO05D001913 3.1e-09 68.6 271 28.4
TAR636G3291 Trochodendron aralioides HOM05D002769 ORTHO05D003160 1.5e-08 66.2 435 24.8
AagrBONN_evm.TU.Sc2ySwM_228.4044 Anthoceros agrestis HOM05D002515 ORTHO05D005796 2.0e-08 65.9 224 26.3
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 2.0e-08 65.9 152 34.2
Mapoly0151s0019 Marchantia polymorpha HOM05D002515 ORTHO05D002722 2.6e-08 65.5 184 28.8
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 9.9e-08 63.5 465 22.2
HPP92_006594 Vanilla planifolia HOM05D002036 ORTHO05D001913 9.9e-08 63.5 307 24.4
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.3e-07 63.2 424 24.1
MD11G1109700 Malus domestica HOM05D002515 ORTHO05D002722 1.7e-07 62.8 181 30.4
Solyc06g083660.4 Solanum lycopersicum HOM05D002769 ORTHO05D003160 3.7e-07 61.6 461 25.6
Sopen06g035050 Solanum pennellii HOM05D002769 ORTHO05D003160 3.7e-07 61.6 465 24.9
Zm00001eb211790 Zea mays HOM05D063750 ORTHO05D001913 1.1e-06 60.1 200 29.0
Nn1g08729 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.4e-06 59.7 42 71.4
Dinv19246 Davidia involucrata HOM05D002769 ORTHO05D003160 1.9e-06 59.3 456 25.2
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 3.2e-06 58.5 842 20.2
Duzib168G0968 Durio zibethinus HOM05D002515 ORTHO05D002722 9.2e-06 57.0 199 31.2


User provided reference genes

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