Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 6.0e-280 966.8 482 100.0
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.2e-164 582.4 500 63.0
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 4.9e-157 558.5 411 68.9
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.6e-155 553.5 412 67.2
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 1.0e-154 550.8 472 61.4
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 3.0e-154 549.3 481 60.7
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 9.6e-153 544.3 423 66.0
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 9.6e-153 544.3 423 66.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 3.1e-151 539.3 478 60.0
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.3e-151 538.5 411 65.5
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.2e-150 537.3 412 67.2
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 4.5e-150 535.4 412 66.0
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 5.8e-150 535.0 412 66.5
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 9.9e-150 534.3 412 64.8
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.3e-149 533.9 409 65.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 3.8e-149 532.3 331 77.0
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 3.2e-148 529.3 415 65.1
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 4.2e-148 528.9 417 64.5
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.2e-148 528.9 456 59.9
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.3e-148 527.7 412 64.6
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 9.3e-148 527.7 412 65.5
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 2.7e-147 526.2 412 63.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.0e-147 525.0 417 63.8
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 1.8e-146 523.5 472 59.1
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 2.3e-146 523.1 417 63.1
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.1e-146 521.9 416 64.2
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 6.7e-146 521.5 420 62.4
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 6.7e-146 521.5 417 62.8
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 4.3e-145 518.8 408 64.0
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 7.4e-145 518.1 408 63.7
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.3e-144 517.3 408 65.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 3.7e-144 515.8 445 59.8
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.8e-143 513.5 394 65.2
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 3.1e-143 512.7 426 63.4
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 6.9e-143 511.5 409 63.8
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 1.2e-142 510.8 474 56.8
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.2e-142 510.8 410 62.7
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.5e-142 510.4 440 60.0
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 1.5e-142 510.4 413 62.5
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 2.6e-142 509.6 412 63.6
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 2.6e-142 509.6 480 57.3
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.6e-142 509.6 433 60.5
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 2.6e-142 509.6 338 73.4
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 3.4e-142 509.2 473 56.4
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.8e-142 508.4 424 62.3
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 5.8e-142 508.4 411 61.6
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 9.9e-142 507.7 411 61.6
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 1.7e-141 506.9 411 62.3
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 2.2e-141 506.5 436 59.6
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 3.8e-141 505.8 410 61.5
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 3.8e-141 505.8 476 58.0
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.5e-140 503.1 414 62.8
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 7.1e-140 501.5 461 59.0
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 1.2e-139 500.7 507 55.6
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.6e-139 500.4 419 62.5
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 2.1e-139 500.0 409 63.1
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 2.7e-139 499.6 412 61.9
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 3.5e-139 499.2 414 62.8
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 1.3e-138 497.3 412 61.7
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 2.3e-138 496.5 410 60.2
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 6.7e-138 495.0 410 62.0
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.5e-137 493.8 462 56.1
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 1.5e-137 493.8 411 62.3
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 1.5e-137 493.8 411 61.1
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 3.3e-137 492.7 321 74.1
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 9.6e-137 491.1 412 61.7
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 8.2e-136 488.0 496 53.4
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 8.2e-136 488.0 410 59.5
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 9.0e-135 484.6 411 61.3
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 9.0e-135 484.6 412 61.7
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 2.0e-134 483.4 411 61.6
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.4e-134 482.6 410 60.7
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 1.3e-133 480.7 394 62.9
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 1.7e-133 480.3 411 60.6
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.9e-132 476.9 366 65.6
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 3.2e-132 476.1 428 58.2
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 5.5e-132 475.3 364 65.4
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 7.1e-132 474.9 410 60.2
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 7.1e-132 474.9 414 58.7
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.1e-131 473.4 365 65.2
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 2.1e-131 473.4 411 59.9
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 7.9e-131 471.5 407 59.2
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 7.9e-131 471.5 410 59.5
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-130 471.1 417 58.8
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 1.3e-130 470.7 418 58.1
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 5.1e-130 468.8 406 59.4
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 1.5e-129 467.2 411 57.9
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 4.3e-129 465.7 444 56.1
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.7e-129 465.3 308 73.7
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 9.7e-129 464.5 407 58.5
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-128 464.2 411 57.2
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.3e-128 464.2 322 71.4
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 2.2e-128 463.4 411 57.4
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 3.7e-128 462.6 406 57.4
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 4.8e-128 462.2 407 57.7
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 9.0e-127 458.0 406 57.1
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 1.2e-126 457.6 376 62.0
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 2.0e-126 456.8 406 56.9
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 5.9e-126 455.3 406 57.1
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 1.0e-125 454.5 408 57.1
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 5.5e-124 448.7 339 66.1
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.2e-123 447.6 365 62.5
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 6.1e-123 445.3 411 56.0
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 6.1e-123 445.3 412 54.6
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 6.7e-122 441.8 391 57.5
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 2.0e-121 440.3 365 61.1
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.2e-120 434.9 398 58.8
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 1.2e-118 431.0 467 52.5
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 7.7e-118 428.3 389 56.6
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 2.5e-116 423.3 389 56.0
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 9.4e-116 421.4 410 53.7
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.0e-114 417.9 324 64.5
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-109 401.4 295 66.8
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.5e-108 397.5 392 55.4
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 5.5e-108 395.6 292 67.5
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 7.2e-108 395.2 389 53.5
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 8.8e-106 388.3 267 73.8
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 3.3e-105 386.3 238 79.0
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 8.2e-104 381.7 323 60.7
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 3.1e-103 379.8 242 76.4
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 2.0e-102 377.1 307 62.9
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.6e-102 376.7 222 82.0
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.2e-101 373.6 307 63.8
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 7.2e-100 368.6 442 45.9
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 7.5e-97 358.6 311 57.9
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.2e-96 357.1 437 46.9
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.0e-93 348.2 295 62.0
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 5.0e-93 345.9 218 78.4
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 3.2e-92 343.2 241 71.4
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 8.0e-91 338.6 206 77.7
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 4.0e-90 336.3 424 45.0
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 6.8e-90 335.5 439 45.8
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.4e-87 327.8 247 66.0
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 4.1e-87 326.2 466 41.0
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.8e-85 319.7 351 50.1
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.6e-83 314.3 355 48.2
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 2.1e-83 313.9 285 58.9
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.4e-79 300.4 219 68.5
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 2.4e-79 300.4 199 74.9
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 4.1e-79 299.7 278 53.6
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 7.8e-78 295.4 195 74.9
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.9e-71 274.2 195 71.8
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 2.7e-70 270.4 253 53.4
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.2e-67 261.5 367 43.9
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 2.8e-67 260.4 245 51.0
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.0e-65 254.2 197 65.0
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.3e-64 251.5 394 41.4
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.5e-60 237.3 135 83.7
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 5.4e-55 219.5 165 66.7
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 4.7e-51 206.5 187 59.9
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 2.2e-48 197.6 116 80.2
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 2.5e-44 184.1 211 50.2
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 9.6e-44 182.2 255 43.9
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 2.1e-38 164.5 224 38.4
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 6.6e-37 159.5 329 32.2
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.1e-35 154.5 395 32.4
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 7.6e-33 146.0 90 75.6
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 6.0e-30 136.3 276 29.3
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 9.6e-28 129.0 216 35.6
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.9e-23 114.8 192 34.9
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 1.5e-17 95.1 75 61.3
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 1.5e-17 95.1 91 61.5
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 5.8e-17 93.2 111 48.6
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.7e-16 91.7 69 60.9
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 3.8e-16 90.5 69 60.9
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 3.0e-13 80.9 65 55.4
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 4.3e-12 77.0 49 69.4
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.0e-10 69.3 71 54.9
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 9.0e-10 69.3 128 32.0
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.5e-09 67.0 50 64.0
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 5.0e-08 63.5 85 43.5
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 1.4e-07 62.0 46 63.0
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.5e-07 61.2 55 49.1


User provided reference genes

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