Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03363 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.9e-113 411.8 191 100.0
EL10Ac2g03945 Beta vulgaris HOM05D004267 ORTHO05D005267 1.3e-65 253.4 190 62.1
Hund19479 Selenicereus undatus HOM05D004267 ORTHO05D005267 2.8e-63 245.7 185 61.1
Sc06g0000890 Simmondsia chinensis HOM05D004267 ORTHO05D005267 5.3e-62 241.5 189 58.2
Actinidia14699 Actinidia chinensis HOM05D004267 ORTHO05D005267 1.4e-59 233.4 187 59.9
Psat6g019000 Pisum sativum HOM05D004267 ORTHO05D005267 4.2e-59 231.9 189 56.1
Eucgr.C00632 Eucalyptus grandis HOM05D004267 ORTHO05D005267 9.3e-59 230.7 189 56.1
Hma1.2p1_1213F.1_g267510 Hydrangea macrophylla HOM05D004267 ORTHO05D005267 9.3e-59 230.7 189 58.2
Sc09g0009630 Simmondsia chinensis HOM05D004267 ORTHO05D005267 1.2e-58 230.3 189 56.1
MSTRG.1674 Avicennia marina HOM05D004267 ORTHO05D005267 1.6e-58 229.9 189 57.7
Actinidia18200 Actinidia chinensis HOM05D004267 ORTHO05D005267 6.0e-58 228.0 187 59.4
Ca_13187_v3 Cicer arietinum L. HOM05D004267 ORTHO05D005267 1.8e-57 226.5 189 55.0
Duzib187G0506 Durio zibethinus HOM05D004267 ORTHO05D005267 2.3e-57 226.1 189 57.7
THA.LOC104803799 Tarenaya hassleriana HOM05D004267 ORTHO05D005267 2.3e-57 226.1 189 57.1
VMungo0647G2384 Vigna mungo HOM05D004267 ORTHO05D005267 2.3e-57 226.1 189 56.1
Glyma.14G092300 Glycine max HOM05D004267 ORTHO05D005267 3.0e-57 225.7 189 56.1
CSS0026627 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D005267 3.9e-57 225.3 189 57.1
CSS0030161 Camellia sinensis var. sinensis HOM05D004267 ORTHO05D000002 3.9e-57 225.3 189 57.1
TAR636G0904 Trochodendron aralioides HOM05D004267 ORTHO05D005267 6.7e-57 224.6 189 57.7
GSVIVG01035339001 Vitis vinifera HOM05D004267 ORTHO05D005267 6.7e-57 224.6 189 56.1
Glyma.17G231200 Glycine max HOM05D004267 ORTHO05D005267 1.1e-56 223.8 189 56.1
SGA_v2.0_scaffold88G27217 Striga asiatica HOM05D004267 ORTHO05D005267 1.1e-56 223.8 189 55.6
Lj5g0002830 Lotus japonicus HOM05D004267 ORTHO05D005267 1.5e-56 223.4 189 54.5
COL.COLO4_21022 Corchorus olitorius HOM05D004267 ORTHO05D005267 1.9e-56 223.0 189 56.6
Phvul.001G033101 Phaseolus vulgaris HOM05D004267 ORTHO05D005267 3.3e-56 222.2 189 55.6
QL02p001694 Quercus lobata HOM05D004267 ORTHO05D005267 3.3e-56 222.2 189 54.0
Rhsim07G0144100 Rhododendron simsii HOM05D004267 ORTHO05D005267 7.4e-56 221.1 189 56.6
TPR.G12986 Trifolium pratense HOM05D004267 ORTHO05D005267 1.6e-55 219.9 189 53.4
Oeu036354.1 Olea europaea HOM05D004267 ORTHO05D005267 4.8e-55 218.4 189 55.0
PSO210G6502 Papaver somniferum HOM05D004267 ORTHO05D005267 4.8e-55 218.4 189 56.1
Medtr1g016900 Medicago truncatula HOM05D004267 ORTHO05D005267 6.2e-55 218.0 189 53.4
vmacro05276 Vaccinium macrocarpon HOM05D004267 ORTHO05D005267 8.1e-55 217.6 189 55.6
BraA03t15208Z Brassica rapa HOM05D004267 ORTHO05D005267 1.1e-54 217.2 190 55.8
Nn8g38967 Nelumbo nucifera HOM05D004267 ORTHO05D005267 1.1e-54 217.2 189 54.5
Aa31sc248G70 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.4e-54 216.9 190 54.7
Sed0007787 Sechium edule HOM05D004267 ORTHO05D005267 1.4e-54 216.9 189 53.4
Gohir.A06G090500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.8e-54 216.5 189 54.5
Gohir.D06G089500 Gossypium hirsutum HOM05D004267 ORTHO05D005267 1.8e-54 216.5 189 54.5
Gorai.010G103400 Gossypium raimondii HOM05D004267 ORTHO05D005267 1.8e-54 216.5 189 54.5
PSO210G4696 Papaver somniferum HOM05D004267 ORTHO05D005267 1.8e-54 216.5 189 55.6
RcHm_v2.0_Chr6g0310421 Rosa chinensis HOM05D004267 ORTHO05D005267 2.4e-54 216.1 191 53.9
ClCG08G016900 Citrullus lanatus HOM05D004267 ORTHO05D005267 3.1e-54 215.7 189 52.9
FAN24G1314 Fragaria x ananassa HOM05D004267 ORTHO05D005267 5.3e-54 214.9 191 55.0
Haze_18224 Corylus avellana HOM05D004267 ORTHO05D005267 6.9e-54 214.5 189 52.9
FvH4_2g32280 Fragaria vesca HOM05D004267 ORTHO05D005267 6.9e-54 214.5 191 55.0
Lalb_Chr14g0367901 Lupinus albus HOM05D004267 ORTHO05D005267 6.9e-54 214.5 189 52.9
A01p05350 Brassica napus HOM05D004267 ORTHO05D005267 9.0e-54 214.2 190 54.2
BolC1t00557H Brassica oleracea HOM05D004267 ORTHO05D005267 9.0e-54 214.2 190 54.2
BraA01t00509Z Brassica rapa HOM05D004267 ORTHO05D005267 9.0e-54 214.2 190 54.2
Cfa017926 Carpinus fangiana HOM05D004267 ORTHO05D005267 9.0e-54 214.2 189 52.9
Migut.A00159 Erythranthe guttata HOM05D004267 ORTHO05D005267 9.0e-54 214.2 189 52.4
FAN20G1958 Fragaria x ananassa HOM05D004267 ORTHO05D005267 9.0e-54 214.2 191 54.5
AL7G18760 Arabidopsis lyrata HOM05D004267 ORTHO05D005267 1.2e-53 213.8 190 54.2
C01p05770 Brassica napus HOM05D004267 ORTHO05D005267 1.2e-53 213.8 190 54.2
Carub.0007s0755 Capsella rubella HOM05D004267 ORTHO05D005267 2.0e-53 213.0 190 54.2
CiPaw.15G042300 Carya illinoinensis HOM05D004267 ORTHO05D005267 2.0e-53 213.0 189 50.8
Lsat_1_v5_gn_3_28241 Lactuca sativa HOM05D004267 ORTHO05D005267 2.0e-53 213.0 188 53.7
AT4G32930 Arabidopsis thaliana HOM05D004267 ORTHO05D005267 2.6e-53 212.6 190 53.7
PGR031G1882 Punica granatum HOM05D004267 ORTHO05D005267 2.6e-53 212.6 189 54.0
A03p61690 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-53 212.2 190 54.2
C07p59420 Brassica napus HOM05D004267 ORTHO05D005267 3.4e-53 212.2 190 54.2
HanXRQChr17g0539351 Helianthus annuus HOM05D004267 ORTHO05D005267 3.4e-53 212.2 188 54.3
DCAR_000778 Daucus carota HOM05D004267 ORTHO05D005267 4.5e-53 211.8 189 54.5
Manes.03G046100 Manihot esculenta HOM05D004267 ORTHO05D005267 4.5e-53 211.8 189 52.9
ATR0789G016 Amborella trichopoda HOM05D004267 ORTHO05D005267 5.8e-53 211.5 189 53.4
arahy.Tifrunner.gnm1.ann1.35PLQF Arachis hypogaea HOM05D004267 ORTHO05D005267 5.8e-53 211.5 189 51.9
Sp7g30710 Schrenkiella parvula HOM05D004267 ORTHO05D005267 5.8e-53 211.5 190 54.2
Thecc.09G050400 Theobroma cacao HOM05D004267 ORTHO05D005267 5.8e-53 211.5 189 53.4
CsaV3_2G025720 Cucumis sativus L. HOM05D004267 ORTHO05D005267 7.6e-53 211.1 189 51.9
Potri.006G233500 Populus trichocarpa HOM05D004267 ORTHO05D005267 7.6e-53 211.1 189 52.9
TWI34G0953 Tripterygium wilfordii HOM05D004267 ORTHO05D005267 7.6e-53 211.1 189 53.4
Duzib168G1102 Durio zibethinus HOM05D004267 ORTHO05D005267 1.7e-52 209.9 189 52.9
Lj8A557T6 Lonicera japonica HOM05D004267 ORTHO05D005267 2.2e-52 209.5 189 55.0
Solyc11g070050.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 2.2e-52 209.5 189 52.4
Sopen11g028730 Solanum pennellii HOM05D004267 ORTHO05D005267 2.2e-52 209.5 189 52.4
BcaC09g52093 Brassica carinata HOM05D004267 ORTHO05D005267 2.9e-52 209.1 190 53.2
CANSAT01G0851 Cannabis sativa HOM05D004267 ORTHO05D005267 2.9e-52 209.1 189 51.9
CANSAT01G1320 Cannabis sativa HOM05D004267 ORTHO05D005267 2.9e-52 209.1 189 51.9
Ciclev10009729m.g Citrus clementina HOM05D004267 ORTHO05D005267 3.8e-52 208.8 189 52.4
Thhalv10025837m.g Eutrema salsugineum HOM05D004267 ORTHO05D005267 3.8e-52 208.8 190 53.7
arahy.Tifrunner.gnm1.ann1.97AHJW Arachis hypogaea HOM05D004267 ORTHO05D005267 6.5e-52 208.0 203 49.3
Peaxi162Scf00247g00612 Petunia axillaris HOM05D004267 ORTHO05D005267 6.5e-52 208.0 189 51.3
FAN15G3631 Fragaria x ananassa HOM05D004267 ORTHO05D005267 1.1e-51 207.2 204 51.5
Aa31LG2G6480 Aethionema arabicum HOM05D004267 ORTHO05D005267 1.4e-51 206.8 190 54.7
PGSC0003DMG400025516 Solanum tuberosum HOM05D004267 ORTHO05D005267 1.9e-51 206.5 189 51.3
Prupe.1G415500 Prunus persica HOM05D004267 ORTHO05D005267 2.5e-51 206.1 187 49.7
unitig_578.g16576 Utricularia gibba HOM05D004267 ORTHO05D005267 2.5e-51 206.1 187 51.9
Gorai.009G047300 Gossypium raimondii HOM05D004267 ORTHO05D005267 4.2e-51 205.3 189 49.7
Gohir.A05G044300 Gossypium hirsutum HOM05D004267 ORTHO05D005267 9.3e-51 204.1 189 48.7
Nitab4.5_0021628g0010 Nicotiana tabacum HOM05D004267 ORTHO05D005267 9.3e-51 204.1 189 50.8
SalBow4G2144 Salvia bowleyana HOM05D004267 ORTHO05D005267 9.3e-51 204.1 189 50.3
Atru.chr7.2026 Acer truncatum HOM05D004267 ORTHO05D005267 2.1e-50 203.0 189 50.8
Cc08_g10140 Coffea canephora HOM05D004267 ORTHO05D005267 2.1e-50 203.0 189 50.8
TAR624G0139 Trochodendron aralioides HOM05D004267 ORTHO05D005267 1.0e-49 200.7 191 51.3
Aqoxy7G03943 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.9e-49 198.7 182 51.1
Solyc11g070060.2 Solanum lycopersicum HOM05D004267 ORTHO05D005267 6.7e-49 198.0 189 49.7
Zm00001eb356880 Zea mays HOM05D004267 ORTHO05D005267 2.5e-48 196.1 188 51.1
Dinv27959 Davidia involucrata HOM05D004267 ORTHO05D005267 2.1e-47 193.0 189 49.2
ECA246G5265 Erigeron canadensis HOM05D004267 ORTHO05D005267 3.7e-47 192.2 188 50.5
MBI04_g12184_MAGBIO Magnolia biondii HOM05D004267 ORTHO05D005267 6.3e-47 191.4 211 46.4
CAN.G309.57 Capsicum annuum HOM05D004267 ORTHO05D005267 5.3e-46 188.3 190 48.4
HPP92_004580 Vanilla planifolia HOM05D004267 ORTHO05D005267 6.9e-46 188.0 189 48.1
Os01g0565600 Oryza sativa ssp. japonica HOM05D004267 ORTHO05D005267 1.5e-45 186.8 189 48.7
Sabra06G0181900 Salix brachista HOM05D004267 ORTHO05D005267 5.9e-45 184.9 241 40.7
SEGI_14756 Sequoiadendron giganteum HOM05D004267 ORTHO05D005267 1.0e-44 184.1 189 46.0
AUR62040201 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.5e-43 179.5 164 51.8
AUR62043052 Chenopodium quinoa HOM05D004267 ORTHO05D005267 5.5e-43 178.3 157 53.5
Mapoly0044s0101 Marchantia polymorpha HOM05D004267 ORTHO05D005267 1.8e-41 173.3 189 42.9
BcaNung02146 Brassica carinata HOM05D004267 ORTHO05D005267 3.0e-41 172.6 150 54.0
RcHm_v2.0_Chr6g0310431 Rosa chinensis HOM05D004267 ORTHO05D005267 1.5e-40 170.2 189 45.0
FAN27G1738 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.5e-40 169.5 200 46.5
Aqoxy408s001 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 3.3e-40 169.1 149 53.7
AUR62009204 Chenopodium quinoa HOM05D004267 ORTHO05D005267 9.7e-40 167.5 159 49.7
MELO3C010766.2 Cucumis melo HOM05D004267 ORTHO05D005267 1.6e-39 166.8 159 49.7
Nitab4.5_0000664g0030 Nicotiana tabacum HOM05D006502 ORTHO05D005267 1.8e-38 163.3 153 50.3
FvH4_2g32260 Fragaria vesca HOM05D004267 ORTHO05D005267 9.1e-38 161.0 187 46.0
CDE07G0102 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 3.4e-37 159.1 139 53.2
CARHR240940 Cardamine hirsuta HOM05D004267 ORTHO05D005267 4.5e-37 158.7 157 50.3
Pp3c5_10040 Physcomitrium patens HOM05D004267 ORTHO05D005267 4.5e-37 158.7 189 42.9
Nn6g35383 Nelumbo nucifera HOM05D004267 ORTHO05D005267 2.2e-36 156.4 150 50.0
SMO117G0066 Selaginella moellendorffii HOM05D004267 ORTHO05D005267 9.4e-35 151.0 188 42.6
MD08G1073900 Malus domestica HOM05D004267 ORTHO05D005267 3.6e-34 149.1 184 41.3
DCAR_004449 Daucus carota HOM05D004267 ORTHO05D005267 4.6e-34 148.7 188 41.5
DCAR_004448 Daucus carota HOM05D004267 ORTHO05D005267 5.1e-33 145.2 189 39.2
Gohir.D05G045900 Gossypium hirsutum HOM05D004267 ORTHO05D005267 4.4e-32 142.1 189 38.1
Sopen11g028740 Solanum pennellii HOM05D004267 ORTHO05D005267 5.7e-32 141.7 189 38.6
FAN24G0417 Fragaria x ananassa HOM05D004267 ORTHO05D005267 2.8e-31 139.4 168 44.0
FAN15G2319 Fragaria x ananassa HOM05D004267 ORTHO05D005267 4.8e-31 138.7 172 43.6
arahy.Tifrunner.gnm1.ann1.BB3MLG Arachis hypogaea HOM05D004267 ORTHO05D005267 2.4e-30 136.3 97 59.8
arahy.Tifrunner.gnm1.ann1.JED36R Arachis hypogaea HOM05D004267 ORTHO05D005267 2.4e-30 136.3 97 59.8
CDE07G1388 Ceratophyllum demersum HOM05D004267 ORTHO05D005267 2.4e-30 136.3 140 49.3
CBR_g18691 Chara braunii HOM05D004267 ORTHO05D005267 1.2e-29 134.0 186 38.2
Lsat_1_v5_gn_5_67680 Lactuca sativa HOM05D004267 ORTHO05D005267 1.2e-29 134.0 154 46.1
Cpa.g.sc78.12 Carica papaya HOM05D004267 ORTHO05D005267 2.7e-26 122.9 98 56.1
Zm00001eb159830 Zea mays HOM05D004267 ORTHO05D005267 1.0e-25 120.9 98 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4469 Anthoceros agrestis HOM05D004267 ORTHO05D005267 1.1e-24 117.5 150 39.3
Oeu057699.1 Olea europaea HOM05D004267 ORTHO05D005267 5.9e-21 105.1 116 45.7
GSVIVG01016838001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.9e-20 102.8 186 34.9
GSVIVG01016840001 Vitis vinifera HOM05D004267 ORTHO05D005267 2.1e-18 96.7 186 34.9
BcaC07g42315 Brassica carinata HOM05D004267 ORTHO05D005267 4.7e-18 95.5 205 31.7
Aqoxy7G03891 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 1.4e-17 94.0 107 46.7
Cre09.g395800 Chlamydomonas reinhardtii HOM05D004267 ORTHO05D005267 2.6e-16 89.7 189 33.3
Peaxi162Scf00545g00002 Petunia axillaris HOM05D004267 ORTHO05D005267 2.6e-16 89.7 126 38.9
Rhsim01G0086000 Rhododendron simsii HOM05D004267 ORTHO05D005267 4.8e-15 85.5 102 47.1
Aqoxy7G03867 Aquilegia oxysepala HOM05D004267 ORTHO05D005267 5.3e-14 82.0 156 29.5
Peaxi162Scf00545g00001 Petunia axillaris HOM05D004267 ORTHO05D005267 3.2e-11 72.8 80 47.5
AUR62002213 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-10 70.9 82 46.3
AUR62010512 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-10 70.9 81 46.9
AUR62018016 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.2e-10 70.9 82 46.3
AUR62022800 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.6e-10 69.3 83 45.8
AUR62036408 Chenopodium quinoa HOM05D001707 ORTHO05D001694 1.0e-09 67.8 45 64.4
AUR62007889 Chenopodium quinoa HOM05D004267 ORTHO05D005267 2.3e-09 66.6 81 45.7
Nitab4.5_0001927g0070 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.0e-09 65.9 62 46.8
AUR62034857 Chenopodium quinoa HOM05D004267 ORTHO05D005267 1.5e-08 63.9 82 43.9
AUR62044607 Chenopodium quinoa HOM05D004267 ORTHO05D005267 3.4e-08 62.8 82 42.7
Nitab4.5_0001927g0060 Nicotiana tabacum HOM05D004267 ORTHO05D005267 4.8e-07 58.9 140 22.9
VMungo1196G0001 Vigna mungo HOM05D005620 ORTHO05D005267 1.1e-06 57.8 40 62.5


User provided reference genes

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