Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.6e-302 1042.0 520 100.0
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.0e-172 609.8 527 62.2
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.9e-170 603.2 509 62.7
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.9e-170 603.2 509 62.7
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 5.1e-152 542.0 513 56.5
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 3.1e-141 506.1 413 64.2
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.0e-131 472.2 516 51.0
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.7e-99 367.5 494 42.7
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 8.6e-91 338.6 503 39.8
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 7.3e-90 335.5 497 39.6
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 9.5e-90 335.1 491 39.9
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.2e-89 334.7 498 40.0
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.6e-89 334.3 506 39.1
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 3.6e-89 333.2 514 39.3
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.3e-88 330.5 506 41.3
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.3e-88 330.5 506 38.3
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 1.5e-87 327.8 503 39.4
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.6e-87 327.0 508 38.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 3.4e-87 326.6 507 36.9
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 7.6e-87 325.5 495 39.8
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 8.4e-86 322.0 381 46.2
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.1e-85 321.6 520 38.3
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 4.6e-84 316.2 499 37.3
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 8.6e-83 312.0 507 40.4
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.5e-82 310.5 508 36.0
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 7.3e-82 308.9 517 36.0
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 6.2e-81 305.8 502 36.9
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.4e-80 304.7 492 39.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.8e-80 304.3 382 44.0
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 8.9e-80 302.0 500 37.8
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.2e-79 301.6 505 37.6
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 2.0e-79 300.8 509 36.9
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 4.4e-79 299.7 519 38.9
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.3e-78 298.1 493 38.3
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.2e-78 297.4 516 37.4
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 4.9e-78 296.2 523 39.0
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.4e-77 294.7 519 36.4
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.4e-77 294.7 522 36.6
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 4.2e-77 293.1 512 36.7
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.2e-77 293.1 501 36.7
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 3.5e-76 290.0 520 36.5
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 7.8e-76 288.9 494 36.6
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.3e-75 287.3 497 35.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 2.3e-75 287.3 395 38.2
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 3.0e-75 287.0 493 35.1
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 6.6e-75 285.8 519 35.6
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 6.6e-75 285.8 517 35.6
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 1.9e-74 284.3 503 35.6
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 4.3e-74 283.1 520 35.6
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 7.3e-74 282.3 510 36.3
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.8e-72 277.7 503 34.8
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 2.0e-71 274.2 507 35.5
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 3.4e-71 273.5 459 37.9
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 9.9e-71 271.9 481 35.3
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.7e-70 271.2 507 34.9
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.9e-70 270.4 479 36.7
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 4.9e-70 269.6 514 34.6
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 4.9e-70 269.6 563 32.1
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.9e-70 269.6 538 37.2
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.9e-70 269.6 538 37.2
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 8.4e-70 268.9 500 34.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.6e-68 264.6 557 33.6
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 2.7e-68 263.8 450 35.6
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 2.7e-68 263.8 511 33.9
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 7.9e-68 262.3 491 34.4
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 7.9e-68 262.3 506 35.8
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.7e-67 261.2 525 33.5
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 8.7e-67 258.8 517 35.0
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.5e-66 258.1 493 35.3
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.9e-66 257.7 495 36.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-65 255.0 496 34.1
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.4e-64 251.5 493 32.9
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.8e-64 251.1 511 32.5
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.0e-63 247.7 499 32.7
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.6e-63 247.3 515 32.8
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.6e-63 247.3 474 32.9
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.9e-63 245.4 446 34.5
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.2e-62 244.2 559 31.1
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.8e-62 243.4 464 34.9
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.4e-61 241.5 497 34.4
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 2.4e-61 240.7 493 33.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 3.2e-61 240.4 417 36.9
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 4.2e-61 240.0 469 33.7
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 7.1e-61 239.2 509 31.6
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 7.1e-61 239.2 502 32.7
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 7.1e-61 239.2 495 33.9
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.2e-60 238.4 495 34.1
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 2.1e-60 237.7 498 31.9
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 6.0e-60 236.1 273 47.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 7.9e-60 235.7 496 31.5
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 7.9e-60 235.7 407 36.9
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 1.0e-59 235.3 517 30.9
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 1.3e-59 235.0 413 35.6
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.1e-59 233.0 500 31.2
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 8.7e-59 232.3 498 31.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.5e-58 231.5 490 31.6
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.5e-58 231.5 451 35.5
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.9e-58 231.1 465 32.3
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 5.6e-58 229.6 390 37.2
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.3e-57 228.4 411 36.7
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.8e-57 227.3 501 31.9
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 3.7e-57 226.9 475 33.3
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.1e-56 225.3 442 35.5
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.5e-55 219.9 444 31.5
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 5.8e-55 219.5 406 34.5
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 2.2e-54 217.6 519 31.4
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 2.9e-54 217.2 499 31.7
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 4.9e-54 216.5 438 32.9
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.1e-53 215.3 395 34.7
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 1.1e-53 215.3 512 31.2
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.9e-53 214.5 507 30.0
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.5e-53 214.2 497 34.6
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 7.1e-53 212.6 421 31.4
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 1.6e-52 211.5 414 35.0
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.7e-52 210.7 517 29.4
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 3.5e-52 210.3 497 33.8
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.0e-52 209.5 497 34.6
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.0e-52 209.5 419 31.3
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.0e-51 208.8 512 33.8
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.7e-51 206.1 411 32.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 6.7e-51 206.1 512 30.7
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 8.7e-51 205.7 474 30.6
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.1e-50 205.3 498 31.1
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.5e-50 204.9 499 33.7
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 2.5e-50 204.1 471 31.4
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 4.3e-50 203.4 514 30.4
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 9.6e-50 202.2 507 30.4
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.3e-49 201.8 441 30.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.6e-49 201.4 486 31.9
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.7e-49 200.3 472 30.1
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 8.2e-49 199.1 392 30.9
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 4.5e-47 193.4 509 27.7
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.2e-46 191.0 447 31.1
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 4.2e-45 186.8 391 30.7
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 7.2e-45 186.0 508 28.9
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 6.1e-44 183.0 394 32.2
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.0e-43 182.2 402 32.6
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 6.3e-41 172.9 344 33.4
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.0e-39 167.9 479 28.0
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-38 165.2 274 36.9
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.9e-38 164.1 260 38.8
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 5.0e-38 163.3 274 36.5
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 6.5e-38 162.9 371 32.3
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 4.2e-37 160.2 232 39.7
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 9.4e-37 159.1 396 28.0
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 1.2e-36 158.7 272 35.7
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 3.6e-36 157.1 285 36.1
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.4e-34 150.2 501 26.5
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 5.3e-32 143.3 256 35.5
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 8.5e-30 136.0 292 31.2
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.5e-26 125.2 267 32.2
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 4.8e-25 120.2 241 32.0
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.1e-24 117.5 282 28.4
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 9.1e-24 115.9 270 31.9
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.6e-23 115.2 281 31.7
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 3.5e-23 114.0 245 30.6
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 3.5e-23 114.0 248 33.1
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.7e-23 112.8 239 35.1
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 6.1e-20 103.2 213 30.5
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.4e-16 92.0 212 32.5
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.0e-14 85.9 441 23.1
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 1.7e-14 85.1 163 34.4
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 5.5e-13 80.1 142 33.1
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 5.5e-13 80.1 163 33.7
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 3.6e-12 77.4 141 34.8
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 6.1e-12 76.6 223 28.7
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.0e-11 75.9 216 27.3
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 3.0e-11 74.3 270 24.8
EL10Ac2g03913 Beta vulgaris HOM05D003538 ORTHO05D004376 8.8e-11 72.8 98 41.8
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-10 72.4 254 26.8
BcaC06g31881 Brassica carinata HOM05D000161 ORTHO05D000111 4.8e-09 67.0 94 44.7
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 2.0e-07 61.6 134 29.1
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 7.7e-07 59.7 107 28.0


User provided reference genes

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