Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 0.0e+00 2194.1 1149 100.0
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 0.0e+00 1472.2 1184 67.1
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1437.2 1187 65.8
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 0.0e+00 1417.9 1187 65.2
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 0.0e+00 1166.8 1134 57.7
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 0.0e+00 1129.8 1195 53.2
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 0.0e+00 1090.9 1206 52.7
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 4.0e-306 1055.0 1201 50.7
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 1.2e-305 1053.5 1196 49.8
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 1.2e-305 1053.5 1176 51.3
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 1.7e-301 1039.6 1204 50.8
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 4.0e-298 1028.5 1188 50.9
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 6.8e-298 1027.7 1194 50.8
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 8.3e-296 1020.8 1187 50.8
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.9e-295 1019.6 1188 50.8
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 3.2e-295 1018.8 1206 49.3
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 7.1e-295 1017.7 1188 50.7
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 1.1e-292 1010.4 1198 48.9
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 5.6e-292 1008.1 1198 48.6
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 8.1e-291 1004.2 1156 51.9
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 9.9e-289 997.3 1179 49.6
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 2.4e-287 992.6 1203 49.2
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 2.4e-287 992.6 1143 52.5
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 4.1e-287 991.9 1206 49.2
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.6e-286 988.4 1188 49.7
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 7.3e-284 981.1 1204 47.8
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 1.2e-283 980.3 1201 48.5
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 3.6e-283 978.8 1195 48.0
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.4e-282 976.1 1189 49.4
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 1.3e-280 970.3 1208 48.0
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 8.7e-277 957.6 1204 47.0
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.3e-275 953.7 1199 47.0
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 8.1e-275 951.0 1184 49.2
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 1.8e-274 949.9 1205 47.5
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 1.2e-273 947.2 1197 47.3
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 1.1e-266 924.1 1175 47.5
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 4.0e-266 922.2 1190 46.7
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 2.9e-264 916.0 1223 46.8
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 2.9e-264 916.0 1199 46.5
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 3.8e-264 915.6 1189 46.4
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 8.4e-264 914.4 1195 46.6
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 1.2e-262 910.6 1140 47.6
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 3.5e-262 909.1 1186 46.2
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 4.6e-262 908.7 1211 46.2
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 1.5e-260 903.7 1125 47.8
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 2.6e-257 892.9 1201 46.0
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 1.4e-250 870.5 1178 44.4
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 6.9e-250 868.2 1189 45.4
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 9.0e-250 867.8 1342 42.0
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 1.2e-249 867.5 1185 45.9
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 2.6e-249 866.3 1186 44.7
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 2.6e-249 866.3 1186 44.7
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 1.9e-247 860.1 1187 45.8
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.6e-246 857.1 1200 43.6
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 2.7e-246 856.3 1208 43.8
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 7.9e-246 854.7 1187 43.7
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 5.1e-245 852.0 1083 46.3
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 1.5e-244 850.5 1083 46.1
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 2.5e-244 849.7 1046 47.0
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 7.4e-244 848.2 1180 44.0
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 8.2e-243 844.7 1329 41.8
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 4.1e-242 842.4 1028 49.4
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 4.1e-242 842.4 1334 41.6
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 5.3e-242 842.0 1184 43.7
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 7.7e-241 838.2 1107 46.6
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.6e-238 830.5 1117 46.0
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 5.9e-233 812.0 1043 46.6
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 2.0e-228 797.0 1198 43.7
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 4.5e-225 785.8 855 53.0
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 6.3e-219 765.4 1085 43.6
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 4.7e-214 749.2 1204 39.7
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 9.8e-212 741.5 1142 43.1
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 2.8e-211 740.0 1084 42.8
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 7.5e-204 715.3 836 50.4
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 4.5e-201 706.1 1190 41.0
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 5.2e-197 692.6 898 47.2
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.0e-189 668.3 1214 39.0
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.9e-179 632.9 994 42.9
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 8.3e-179 632.1 829 47.0
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 3.3e-175 620.2 865 44.3
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 3.2e-162 577.0 653 51.6
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 6.0e-161 572.8 941 40.7
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 5.1e-160 569.7 1132 34.7
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 2.4e-157 560.8 996 37.3
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 1.6e-150 538.1 591 52.5
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 2.0e-148 531.2 1182 33.3
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 1.1e-143 515.4 492 56.9
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 1.3e-136 491.9 548 51.3
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.7e-126 458.4 752 40.0
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.8e-126 456.8 495 51.3
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 5.9e-124 449.9 677 42.1
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 3.0e-120 437.6 607 45.1
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 8.0e-113 412.9 576 44.6
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 1.3e-110 405.6 613 41.3
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 1.0e-107 396.0 533 44.8
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 2.5e-106 391.3 512 44.7
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 2.3e-96 358.2 497 44.1
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.6e-84 318.9 374 48.4
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 5.9e-84 317.0 801 32.5
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 1.8e-77 295.4 1171 26.3
MD14G1142900 Malus domestica HOM05D000087 ORTHO05D005735 2.0e-71 275.4 258 57.8
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.2e-68 266.2 541 39.7
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 6.0e-68 263.8 405 42.5
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 3.3e-66 258.1 444 39.2
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 4.3e-58 231.1 907 26.5
CSS0029196 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.4e-56 226.1 175 66.3
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 2.6e-47 195.3 349 38.1
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 7.1e-45 187.2 168 58.9
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 2.1e-41 175.6 165 56.4
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.6e-39 168.7 234 46.2
SEGI_26992 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.3e-38 166.4 189 48.7
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 3.2e-37 161.8 254 37.0
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.2e-37 161.4 298 40.9
AL8G10020 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 6.0e-36 157.5 253 40.3
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 3.4e-31 141.7 1147 21.6
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 1.7e-30 139.4 246 35.4
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.9e-30 138.7 123 56.1
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.8e-25 122.1 130 49.2
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 3.7e-25 121.7 96 65.6
SEGI_26806 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 4.8e-25 121.3 249 32.9
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.8e-24 119.4 176 42.0
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.4e-23 115.2 115 55.7
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 3.8e-22 111.7 128 51.6
MBI04_g04804_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.9e-19 101.7 99 52.5
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.4e-16 92.4 65 66.2
RcHm_v2.0_Chr7g0188121 Rosa chinensis HOM05D000087 ORTHO05D005735 6.9e-16 90.9 71 64.8
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 1.3e-14 86.7 160 35.0
Duzib084G0615 Durio zibethinus HOM05D000087 ORTHO05D005735 2.2e-14 85.9 95 52.6
VMungo1080G1218 Vigna mungo HOM05D000087 ORTHO05D005735 1.1e-13 83.6 97 50.5
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.5e-13 82.4 90 47.8
MBI17_g33112_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 7.2e-13 80.9 63 60.3
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 7.2e-13 80.9 119 39.5
VMungo0145G0001 Vigna mungo HOM05D000087 ORTHO05D005735 9.4e-13 80.5 97 49.5
SalBow1G5284 Salvia bowleyana HOM05D000087 ORTHO05D005735 1.6e-12 79.7 72 61.1
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 3.6e-12 78.6 90 46.7
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.1e-10 73.6 91 44.0
CARHR293850 Cardamine hirsuta HOM05D000087 ORTHO05D005735 2.0e-10 72.8 75 50.7
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.3e-10 72.0 91 44.0
CARHR046160 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.3e-10 71.6 61 55.7
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.7e-09 69.7 143 30.8
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 1.4e-08 66.6 93 41.9
CARHR291380 Cardamine hirsuta HOM05D000087 ORTHO05D005735 6.9e-08 64.3 72 48.6
EL10Ac2g04007 Beta vulgaris HOM05D000087 ORTHO05D088565 2.0e-07 62.8 78 51.3
MBI04_g04802_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 3.4e-07 62.0 65 53.8
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 3.8e-06 58.5 75 41.3


User provided reference genes

Program Settings