Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.5e-251 872.5 480 100.0
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 5.3e-119 432.2 512 56.1
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.5e-118 430.6 500 57.4
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.8e-112 409.8 499 54.3
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 1.1e-111 407.9 493 54.2
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 4.2e-92 342.8 426 51.4
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 2.0e-54 217.6 409 40.8
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.7e-53 214.5 616 35.7
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 5.0e-53 213.0 584 37.2
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 3.1e-50 203.8 608 34.5
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 6.8e-50 202.6 617 34.5
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 1.2e-49 201.8 415 43.9
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 4.4e-49 199.9 575 34.1
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 2.2e-48 197.6 602 35.4
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 2.4e-47 194.1 568 35.6
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.2e-46 191.8 581 38.4
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.3e-45 188.3 613 32.1
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.3e-45 188.3 315 49.2
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.7e-45 188.0 326 45.1
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.1e-45 186.4 326 48.2
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 4.3e-44 183.3 503 34.4
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.6e-43 181.4 558 34.1
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 2.8e-43 180.6 369 40.1
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 6.2e-43 179.5 514 33.5
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.1e-42 178.7 300 48.7
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 3.1e-42 177.2 303 48.2
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 5.2e-42 176.4 600 33.2
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 2.0e-41 174.5 534 35.0
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 2.0e-41 174.5 293 42.3
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 2.6e-41 174.1 449 38.8
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 7.6e-41 172.6 396 36.6
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 7.6e-41 172.6 606 34.5
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.7e-40 171.4 322 44.7
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.7e-40 171.4 491 33.0
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.2e-40 171.0 396 38.9
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 6.4e-40 169.5 521 34.4
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.4e-39 168.3 333 41.7
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.9e-39 167.9 393 37.7
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 2.4e-39 167.5 310 38.4
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 2.4e-39 167.5 504 32.3
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 2.4e-39 167.5 310 43.5
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.1e-39 166.8 393 37.7
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 9.2e-39 165.6 335 39.1
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 1.6e-38 164.9 334 43.1
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.6e-38 164.9 439 34.9
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 1.6e-38 164.9 534 32.4
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 4.6e-38 163.3 311 37.6
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 4.6e-38 163.3 468 34.0
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 6.0e-38 162.9 525 33.3
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 6.0e-38 162.9 528 36.6
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 7.8e-38 162.5 477 33.8
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 7.8e-38 162.5 375 38.9
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 7.8e-38 162.5 331 41.7
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 7.8e-38 162.5 366 41.3
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.0e-37 162.2 455 36.7
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 1.7e-37 161.4 408 36.0
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.3e-37 161.0 503 35.6
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 5.1e-37 159.8 547 31.6
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 5.1e-37 159.8 547 31.6
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 8.6e-37 159.1 540 31.3
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 1.1e-36 158.7 495 33.1
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 4.3e-36 156.8 489 33.9
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 4.3e-36 156.8 382 38.5
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 4.3e-36 156.8 406 37.2
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 4.3e-36 156.8 529 33.6
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 9.6e-36 155.6 354 40.4
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 9.6e-36 155.6 564 29.4
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 2.8e-35 154.1 512 32.6
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 6.2e-35 152.9 547 33.1
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 6.2e-35 152.9 547 33.1
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 6.2e-35 152.9 402 37.1
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 8.1e-35 152.5 422 34.4
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 1.8e-34 151.4 510 33.7
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 1.8e-34 151.4 550 30.4
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 1.8e-34 151.4 286 44.4
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 2.4e-34 151.0 430 37.2
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 3.1e-34 150.6 566 32.2
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 8.9e-34 149.1 524 32.6
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 8.9e-34 149.1 540 32.2
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 4.4e-33 146.7 551 31.6
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 7.6e-33 146.0 485 34.0
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.3e-32 145.2 323 38.4
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 4.9e-32 143.3 567 33.7
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 4.9e-32 143.3 602 32.2
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.1e-31 142.1 557 33.4
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.4e-31 141.7 398 30.9
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 1.9e-31 141.4 538 34.8
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 1.9e-31 141.4 533 31.1
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 2.4e-31 141.0 535 30.8
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 5.4e-31 139.8 469 31.3
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 1.6e-30 138.3 521 29.9
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 7.8e-30 136.0 533 31.0
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 2.3e-29 134.4 449 32.1
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.1e-28 132.1 459 32.9
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 5.6e-28 129.8 584 28.4
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 2.1e-27 127.9 579 29.2
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 3.6e-27 127.1 219 42.0
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 2.4e-26 124.4 506 28.3
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 3.1e-26 124.0 316 35.1
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 5.3e-26 123.2 308 34.1
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.8e-25 119.8 322 37.6
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 9.9e-25 119.0 317 36.6
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 3.8e-24 117.1 743 26.0
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 6.4e-24 116.3 569 30.1
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 3.5e-22 110.5 437 28.1
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 1.3e-21 108.6 407 32.4
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 6.6e-21 106.3 282 33.7
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 8.7e-21 105.9 205 37.1
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 2.1e-19 101.3 361 30.5
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 6.2e-19 99.8 193 44.0
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 6.2e-19 99.8 410 28.0
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.4e-18 97.8 503 28.0
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 7.6e-17 92.8 454 28.2
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 8.4e-16 89.4 148 41.2
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 1.9e-15 88.2 276 33.7
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 3.5e-14 84.0 366 30.3
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 6.0e-14 83.2 320 27.5
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 1.0e-13 82.4 401 26.2
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 1.0e-13 82.4 200 41.0
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 1.8e-13 81.6 147 52.4
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.8e-13 81.6 191 36.1
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 1.1e-12 79.0 242 36.8
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 3.3e-12 77.4 533 26.6
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 9.6e-12 75.9 325 31.7
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 1.2e-09 68.9 165 34.5
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 2.6e-09 67.8 296 24.7
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 3.4e-09 67.4 140 34.3
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 1.3e-08 65.5 75 56.0
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 8.4e-08 62.8 252 29.4
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 9.3e-07 59.3 441 26.5
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 1.2e-06 58.9 258 28.7
SGA_v2.0_scaffold169G38591 Striga asiatica HOM05D005642 ORTHO05D006672 1.2e-06 58.9 87 40.2
Psat6g049400 Pisum sativum HOM05D003044 ORTHO05D001869 1.6e-06 58.5 233 28.3
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 2.1e-06 58.2 223 28.7
Glyma.10G120200 Glycine max HOM05D003044 ORTHO05D001869 4.6e-06 57.0 205 27.3
Glyma.20G070600 Glycine max HOM05D003044 ORTHO05D001869 4.6e-06 57.0 205 27.8
Lsat_1_v5_gn_8_21821 Lactuca sativa HOM05D003044 ORTHO05D001869 7.9e-06 56.2 326 29.4


User provided reference genes

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