Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 6.0e-146 520.8 255 100.0
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 6.8e-81 304.7 266 61.7
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 3.8e-76 288.9 214 66.8
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.6e-74 283.5 249 61.0
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 3.6e-74 282.3 249 59.8
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 2.0e-72 276.6 244 57.4
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.4e-72 275.8 237 60.3
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.7e-71 272.3 245 58.4
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.7e-71 272.3 255 58.0
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 4.9e-71 271.9 250 56.8
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 6.3e-71 271.6 256 56.2
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 8.3e-71 271.2 244 58.6
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 2.4e-70 269.6 232 59.5
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 4.1e-70 268.9 244 57.0
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 5.4e-70 268.5 249 56.2
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 1.2e-69 267.3 252 55.6
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 2.7e-69 266.2 254 54.3
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 3.5e-69 265.8 242 57.9
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.0e-68 264.2 252 59.1
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 2.9e-68 262.7 252 56.3
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 3.9e-68 262.3 249 54.6
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 3.9e-68 262.3 245 55.1
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 6.6e-68 261.5 253 54.2
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 8.6e-68 261.2 276 51.8
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 8.6e-68 261.2 244 56.6
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 1.1e-67 260.8 240 57.1
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 5.6e-67 258.5 245 55.1
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 7.3e-67 258.1 275 52.0
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 9.5e-67 257.7 253 54.5
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.2e-66 257.3 389 41.6
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 2.1e-66 256.5 245 54.7
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 6.1e-66 255.0 248 55.2
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.0e-66 254.6 277 50.5
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.4e-65 253.8 245 55.1
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.8e-65 253.4 277 50.5
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.8e-65 253.4 257 51.4
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 1.8e-65 253.4 245 54.7
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 3.1e-65 252.7 245 54.3
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 4.0e-65 252.3 252 53.6
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 6.8e-65 251.5 247 55.5
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 1.5e-64 250.4 247 54.3
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.5e-64 250.4 245 53.5
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.5e-64 250.4 240 56.2
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 2.0e-64 250.0 245 54.3
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 4.4e-64 248.8 249 53.4
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 4.4e-64 248.8 269 50.2
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 5.8e-64 248.4 241 52.3
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 9.8e-64 247.7 238 54.6
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.7e-63 246.9 244 54.1
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.2e-63 246.5 253 53.0
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 2.2e-63 246.5 253 53.0
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.9e-63 246.1 253 52.6
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 3.7e-63 245.7 238 52.5
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 4.9e-63 245.4 261 53.6
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 1.9e-62 243.4 244 52.0
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.9e-62 243.4 238 54.2
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 3.2e-62 242.7 245 52.2
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 5.4e-62 241.9 247 54.7
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 9.2e-62 241.1 253 51.0
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 6.0e-61 238.4 167 71.3
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 6.0e-61 238.4 232 56.5
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.0e-60 237.7 247 52.2
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 1.7e-60 236.9 238 52.5
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 2.3e-60 236.5 252 48.8
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 3.9e-60 235.7 265 48.7
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.5e-59 233.8 254 52.8
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 5.6e-59 231.9 247 51.8
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 5.6e-59 231.9 242 51.7
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 9.5e-59 231.1 233 51.9
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.8e-58 229.6 251 53.4
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 6.2e-58 228.4 251 49.8
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 6.2e-58 228.4 242 50.0
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 1.8e-57 226.9 260 50.0
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.3e-57 226.5 238 54.6
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 3.1e-57 226.1 252 48.8
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 9.8e-56 221.1 257 51.0
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 1.1e-54 217.6 217 55.3
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.9e-54 216.9 164 64.0
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 3.2e-54 216.1 155 64.5
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 5.4e-54 215.3 169 63.3
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 9.2e-54 214.5 243 49.0
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 2.7e-53 213.0 238 48.3
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 2.7e-53 213.0 164 64.6
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 3.9e-52 209.1 242 45.0
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.1e-51 207.6 244 46.7
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 2.1e-50 203.4 224 52.7
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.1e-50 203.4 260 46.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.1e-49 201.1 160 62.5
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.4e-49 200.7 157 59.2
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 3.1e-49 199.5 237 43.0
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 4.9e-47 192.2 149 64.4
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.4e-46 190.7 148 64.2
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 1.9e-46 190.3 248 46.0
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.0e-44 184.5 207 50.2
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 2.5e-43 179.9 217 49.3
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 3.3e-43 179.5 251 44.2
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 1.6e-42 177.2 194 49.0
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 2.8e-42 176.4 112 72.3
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.0e-41 172.6 275 40.0
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.0e-41 172.6 275 40.0
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.5e-40 170.6 142 57.7
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 3.4e-40 169.5 142 57.7
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 5.8e-40 168.7 293 35.2
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 7.6e-40 168.3 142 58.5
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 2.2e-39 166.8 142 57.0
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 2.2e-39 166.8 142 57.0
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 3.9e-36 156.0 131 56.5
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 9.6e-35 151.4 130 58.5
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 5.3e-33 145.6 217 40.1
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 9.0e-33 144.8 89 76.4
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 1.7e-31 140.6 138 50.7
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 8.4e-31 138.3 143 56.6
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 1.2e-29 134.4 102 61.8
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.1e-25 121.3 117 53.8
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 3.8e-23 112.8 120 48.3
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 4.9e-23 112.5 102 53.9
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.4e-22 110.9 208 33.7
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 2.4e-22 110.2 113 52.2
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 4.2e-22 109.4 105 52.4
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 9.3e-22 108.2 168 36.9
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.0e-20 104.8 97 54.6
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 3.9e-20 102.8 56 80.4
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 1.1e-17 94.7 104 50.0
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 1.0e-15 88.2 99 44.4
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.3e-15 87.8 101 49.5
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 5.7e-11 72.4 78 43.6
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.7e-10 69.7 33 84.8
Hund04792 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.1e-09 68.2 90 45.6
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 1.8e-09 67.4 43 76.7
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 5.3e-09 65.9 122 38.5
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 3.4e-08 63.2 41 75.6
Hund19679 Selenicereus undatus HOM05D000185 ORTHO05D004774 3.4e-08 63.2 33 81.8
Hund09305 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.6e-08 62.0 37 75.7
Hund12262 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-07 61.2 32 81.2
Hund12920 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-07 61.2 32 81.2
Hund15748 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-07 61.2 32 81.2
Hund20091 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-07 61.2 32 81.2
Hund23495 Selenicereus undatus HOM05D000185 ORTHO05D007317 1.3e-07 61.2 32 81.2
Hund25527 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-07 61.2 32 81.2
Hund26522 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-07 61.2 32 81.2
Hund30606 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.3e-07 61.2 32 81.2
Hund03505 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.7e-07 60.8 32 81.2
Hund14982 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.8e-07 59.7 32 78.1
Hund03414 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.0e-07 59.3 80 45.0
Hund00619 Selenicereus undatus HOM05D000185 ORTHO05D007317 6.5e-07 58.9 32 78.1
Hund08079 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.5e-07 58.9 37 73.0
Hund17600 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.5e-07 58.9 37 73.0
Hund24946 Selenicereus undatus HOM05D000185 ORTHO05D000105 6.5e-07 58.9 32 78.1
Hund01830 Selenicereus undatus HOM05D000185 ORTHO05D000105 8.4e-07 58.5 40 62.5
Hund20427 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.1e-06 58.2 33 75.8
Hund11599 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-06 57.8 30 80.0
Hund15867 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-06 57.8 32 75.0
Hund22414 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-06 57.8 30 80.0
Hund25834 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.4e-06 57.8 32 78.1
Hund00290 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.9e-06 57.4 30 80.0
Hund22910 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.9e-06 57.4 35 71.4
Hund12643 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.5e-06 55.8 32 71.9
Hund06299 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.2e-06 55.5 34 70.6
Hund18575 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.2e-06 55.5 29 79.3
Hund18579 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.2e-06 55.5 29 79.3
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 7.2e-06 55.5 43 53.5
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 9.3e-06 55.1 33 72.7


User provided reference genes

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