Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 2.0e-53 212.2 113 100.0
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 1.2e-45 186.4 114 88.6
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 4.5e-45 184.5 113 84.1
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 4.5e-45 184.5 113 83.2
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 83.3
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 1.7e-44 182.6 114 84.2
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 6.5e-44 180.6 113 83.2
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 8.5e-44 180.3 114 83.3
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 8.5e-44 180.3 114 83.3
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.5e-43 179.5 114 81.6
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.9e-43 179.1 113 81.4
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 1.9e-43 179.1 110 84.5
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 2.5e-43 178.7 110 83.6
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 80.7
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.5e-43 177.6 114 82.5
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.5e-43 177.6 114 82.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 7.2e-43 177.2 114 81.6
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 7.2e-43 177.2 113 80.5
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 7.2e-43 177.2 114 80.7
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 80.0
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 80.0
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 80.0
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.2e-42 176.4 115 80.0
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 1.6e-42 176.0 112 83.0
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 1.6e-42 176.0 114 81.6
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 79.8
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 80.7
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 81.6
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 2.7e-42 175.3 114 79.8
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.7e-42 175.3 114 81.6
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 2.7e-42 175.3 114 78.9
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 2.7e-42 175.3 114 79.8
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.6e-42 174.9 113 78.8
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 3.6e-42 174.9 113 78.8
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 80.7
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 80.7
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 6.1e-42 174.1 114 80.7
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 6.1e-42 174.1 110 80.0
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.1e-42 174.1 114 80.7
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.1e-42 174.1 114 80.7
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 8.0e-42 173.7 114 79.8
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 1.0e-41 173.3 114 78.1
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 79.8
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 77.2
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 79.8
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 78.9
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 78.9
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 3.0e-41 171.8 114 81.6
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 3.0e-41 171.8 115 77.4
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 5.2e-41 171.0 114 78.9
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 5.2e-41 171.0 115 77.4
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.2e-41 171.0 110 80.0
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 5.2e-41 171.0 115 77.4
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 76.3
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 6.8e-41 170.6 115 77.4
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 8.8e-41 170.2 114 77.2
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.2e-40 169.9 115 76.5
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.5e-40 169.5 114 78.1
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 2.0e-40 169.1 113 75.2
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 2.0e-40 169.1 113 76.1
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 2.0e-40 169.1 115 79.1
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 2.6e-40 168.7 110 78.2
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.6e-40 168.7 114 78.9
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 78.9
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 3.4e-40 168.3 112 76.8
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 3.4e-40 168.3 108 80.6
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 3.4e-40 168.3 113 77.0
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 4.4e-40 167.9 113 77.9
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 5.7e-40 167.5 114 76.3
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 5.7e-40 167.5 110 79.1
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 9.8e-40 166.8 115 77.4
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.7e-39 166.0 110 76.4
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 2.2e-39 165.6 104 84.6
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 2.2e-39 165.6 113 77.0
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 2.2e-39 165.6 113 77.0
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 2.2e-39 165.6 113 77.0
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 2.2e-39 165.6 110 78.2
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 2.8e-39 165.2 114 77.2
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 3.7e-39 164.9 110 78.2
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 3.7e-39 164.9 114 74.6
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 4.8e-39 164.5 113 76.1
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 4.8e-39 164.5 108 80.6
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 4.8e-39 164.5 111 74.8
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 6.3e-39 164.1 114 74.6
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 6.3e-39 164.1 114 74.6
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 6.3e-39 164.1 114 76.3
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 6.3e-39 164.1 112 76.8
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 6.3e-39 164.1 110 77.3
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 8.3e-39 163.7 114 75.4
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 8.3e-39 163.7 111 75.7
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.1e-38 163.3 113 76.1
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.4e-38 162.9 110 76.4
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 1.8e-38 162.5 113 74.3
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 2.4e-38 162.2 113 75.2
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 2.4e-38 162.2 108 79.6
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 4.1e-38 161.4 106 79.2
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 5.4e-38 161.0 113 75.2
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 9.1e-38 160.2 112 75.9
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 9.1e-38 160.2 114 74.6
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 9.1e-38 160.2 109 78.9
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 9.1e-38 160.2 146 63.0
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 9.1e-38 160.2 115 73.9
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.2e-37 159.8 109 77.1
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 2.0e-37 159.1 110 74.5
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.3e-36 156.4 115 72.2
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 1.7e-36 156.0 113 72.6
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 2.9e-36 155.2 142 63.4
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.9e-35 152.5 113 70.8
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 5.5e-35 151.0 145 60.0
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.6e-34 149.4 104 76.0
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.0e-33 146.7 113 66.4
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.2e-32 143.3 113 65.5
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 1.5e-32 142.9 80 91.2
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 2.0e-32 142.5 80 90.0
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.6e-32 142.1 84 88.1
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 5.7e-32 141.0 91 80.2
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.8e-31 138.7 115 67.0
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 2.8e-31 138.7 99 73.7
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 3.7e-31 138.3 79 89.9
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 3.1e-30 135.2 77 88.3
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 4.5e-29 131.3 107 65.4
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 2.9e-28 128.6 83 80.7
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 2.9e-28 128.6 83 80.7
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 9.5e-27 123.6 94 72.3
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.1e-26 122.5 72 84.7
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 6.1e-26 120.9 65 92.3
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 2.0e-24 115.9 77 76.6
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 2.6e-24 115.5 105 56.2
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 4.4e-24 114.8 77 79.2
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 2.2e-23 112.5 104 55.8
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 1.1e-22 110.2 114 58.8
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 1.6e-21 106.3 76 72.4
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.5e-21 105.1 102 54.9
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 5.9e-21 104.4 76 72.4
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.9e-21 104.4 109 51.4
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 5.0e-20 101.3 104 57.7
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 1.1e-19 100.1 69 75.4
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.5e-19 99.0 63 82.5
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 3.6e-18 95.1 65 76.9
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.6e-16 89.0 100 54.0
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 1.3e-15 86.7 105 46.7
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.3e-15 86.7 86 54.7
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 2.2e-15 85.9 51 88.2
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.1e-14 83.6 82 54.9
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 2.4e-14 82.4 45 88.9
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 2.4e-14 82.4 101 48.5
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 3.2e-14 82.0 50 84.0
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.6e-13 79.7 51 82.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 3.5e-13 78.6 57 70.2
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 3.5e-13 78.6 95 51.6
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 6.0e-13 77.8 54 68.5
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 1.3e-12 76.6 43 88.4
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.1e-11 73.6 43 83.7
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 3.3e-11 72.0 43 81.4
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 9.5e-11 70.5 90 52.2
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.6e-10 69.7 62 56.5
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 2.8e-10 68.9 98 48.0
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 3.6e-10 68.6 95 43.2
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-09 67.0 59 59.3
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.8e-09 66.2 59 52.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 1.2e-08 63.5 96 45.8
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 2.0e-08 62.8 92 44.6


User provided reference genes

Program Settings