Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.8e-156 557.4 602 100.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 1.5e-73 282.0 248 65.3
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.4e-68 264.6 211 71.1
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.7e-66 258.5 220 67.7
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.5e-57 228.8 252 55.6
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 7.3e-57 226.5 196 60.7
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.8e-56 224.6 242 57.0
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 2.8e-56 224.6 242 57.0
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.6e-54 216.5 281 51.2
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.8e-53 214.2 237 57.8
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.9e-52 211.8 173 68.2
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 9.3e-52 209.5 225 56.9
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 1.6e-51 208.8 201 59.2
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.7e-51 208.0 210 57.1
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 6.0e-51 206.8 218 56.0
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 6.0e-51 206.8 160 71.2
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 7.8e-51 206.5 246 50.8
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.7e-50 205.3 207 58.5
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.9e-50 204.1 209 55.5
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 8.7e-50 203.0 233 53.2
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 1.9e-49 201.8 226 53.5
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 4.3e-49 200.7 209 56.5
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.3e-49 200.7 254 48.4
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 5.6e-49 200.3 171 62.0
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 7.3e-49 199.9 245 54.3
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 9.6e-49 199.5 245 51.4
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.3e-48 199.1 210 55.2
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.6e-48 198.7 259 53.7
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 6.2e-48 196.8 249 52.6
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.4e-47 195.7 209 58.4
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 2.4e-47 194.9 234 53.0
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.1e-47 194.5 280 48.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 3.1e-47 194.5 222 55.4
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.1e-47 194.5 255 49.0
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 4.0e-47 194.1 228 55.3
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 6.9e-47 193.4 221 53.4
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.0e-47 193.0 222 55.9
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 1.2e-46 192.6 238 50.8
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.6e-46 191.4 260 50.0
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 3.4e-46 191.0 248 51.6
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 4.5e-46 190.7 193 57.5
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 4.5e-46 190.7 218 53.7
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 5.8e-46 190.3 201 54.2
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 7.6e-46 189.9 207 55.6
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 7.6e-46 189.9 218 56.9
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 9.9e-46 189.5 207 55.6
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 9.9e-46 189.5 186 59.7
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.3e-45 189.1 212 55.7
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.3e-45 189.1 212 55.7
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.3e-45 189.1 185 60.0
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.7e-45 188.7 248 50.4
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.7e-45 188.7 212 55.7
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.9e-45 188.0 254 49.6
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 3.8e-45 187.6 238 51.3
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 6.4e-45 186.8 237 51.5
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 6.4e-45 186.8 212 55.2
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.4e-45 186.8 212 55.2
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 8.4e-45 186.4 258 49.6
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.4e-44 184.9 235 53.2
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 3.2e-44 184.5 175 62.3
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 5.4e-44 183.7 203 58.6
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 7.1e-44 183.3 207 55.1
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 9.3e-44 183.0 254 51.6
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 9.3e-44 183.0 210 54.3
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 9.3e-44 183.0 200 54.0
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.2e-43 182.6 202 52.5
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.6e-43 182.2 224 50.0
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 3.5e-43 181.0 274 47.1
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 3.5e-43 181.0 222 53.2
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 4.6e-43 180.6 222 54.1
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 4.6e-43 180.6 222 54.1
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 6.0e-43 180.3 150 67.3
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.0e-43 180.3 153 65.4
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.9e-43 179.9 153 64.7
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.0e-42 179.5 236 48.3
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.0e-42 179.5 153 64.7
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 3.0e-42 177.9 150 67.3
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 6.7e-42 176.8 258 49.2
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 8.7e-42 176.4 236 50.8
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.5e-41 175.6 150 66.0
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 4.3e-41 174.1 262 48.1
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 9.6e-41 172.9 256 47.3
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.3e-40 172.6 219 52.1
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 1.3e-40 172.6 153 65.4
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.6e-40 172.2 197 51.3
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 6.2e-40 170.2 113 77.0
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 6.2e-40 170.2 191 57.6
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.8e-39 168.7 249 45.8
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 3.1e-39 167.9 128 68.0
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.3e-39 167.2 114 75.4
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.2e-38 166.0 212 49.5
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.2e-38 166.0 260 46.5
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-38 165.2 153 61.4
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.6e-38 164.9 153 60.8
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.6e-38 164.9 133 66.2
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 5.8e-38 163.7 113 75.2
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 7.6e-38 163.3 150 62.0
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.3e-37 162.5 119 68.1
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.9e-37 161.4 107 76.6
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 6.5e-37 160.2 113 74.3
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 8.4e-37 159.8 249 42.6
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 3.2e-36 157.9 110 75.5
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 5.5e-36 157.1 120 70.0
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-35 156.0 110 74.5
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 3.0e-34 151.4 190 52.1
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 3.0e-34 151.4 164 53.7
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.9e-33 148.7 164 53.7
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 3.3e-33 147.9 121 66.9
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.4e-31 142.5 164 50.0
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.8e-31 142.1 244 44.7
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.8e-31 142.1 164 50.6
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 2.4e-31 141.7 182 45.6
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 6.9e-31 140.2 145 57.9
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 7.6e-30 136.7 249 43.0
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 6.5e-29 133.7 196 49.0
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.4e-28 132.5 226 47.3
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.4e-28 132.5 133 58.6
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 4.2e-28 131.0 153 52.3
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 4.2e-28 131.0 153 52.3
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 5.5e-28 130.6 91 68.1
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 2.1e-27 128.6 97 71.1
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 4.6e-27 127.5 213 46.5
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.0e-26 126.3 81 76.5
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 3.0e-26 124.8 93 69.9
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.5e-25 121.7 244 37.7
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 4.3e-25 120.9 223 45.3
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.8e-23 115.5 103 62.1
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 4.1e-23 114.4 142 50.7
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.5e-22 112.5 102 54.9
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.0e-22 112.1 108 53.7
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.0e-22 112.1 123 51.2
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.6e-22 111.7 115 57.4
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.0e-21 109.8 115 56.5
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 2.2e-21 108.6 104 56.7
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 8.5e-21 106.7 108 57.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.1e-20 106.3 107 53.3
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.4e-20 105.9 109 52.3
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.9e-20 105.5 104 56.7
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 3.2e-20 104.8 109 56.0
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 4.2e-20 104.4 111 50.5
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 9.4e-20 103.2 96 61.5
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 2.1e-19 102.1 108 50.9
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.7e-19 101.7 105 51.4
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 2.7e-19 101.7 105 55.2
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 4.6e-19 100.9 146 45.9
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.8e-18 99.0 142 45.8
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 3.9e-18 97.8 113 54.9
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.3e-17 94.7 103 54.4
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 3.3e-17 94.7 105 46.7
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 4.8e-16 90.9 106 47.2
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 6.9e-15 87.0 189 39.2
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 2.6e-14 85.1 113 47.8
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 7.7e-14 83.6 66 71.2
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 7.7e-14 83.6 102 44.1
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 2.9e-13 81.6 83 59.0
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 1.4e-12 79.3 56 76.8
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 3.2e-12 78.2 201 38.3
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 3.2e-12 78.2 67 56.7
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-11 76.3 53 67.9
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 2.7e-11 75.1 146 36.3
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.3e-10 72.0 77 53.2
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.8e-08 65.1 67 58.2
SGA_v2.0_scaffold100G29610 Striga asiatica HOM05D000178 ORTHO05D001740 3.1e-07 61.6 64 46.9
Thecc.09G051000 Theobroma cacao HOM05D004041 ORTHO05D004564 9.1e-07 60.1 47 63.8


User provided reference genes

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