Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 0.0e+00 1160.6 575 100.0
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 6.6e-209 731.1 521 68.9
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 8.9e-206 720.7 539 67.0
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.1e-187 660.6 528 62.1
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.0e-186 654.8 528 62.3
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 8.1e-183 644.4 528 60.2
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 2.0e-181 639.8 537 59.6
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 7.6e-181 637.9 530 61.1
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 7.6e-181 637.9 521 61.4
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.4e-179 633.6 529 58.8
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 1.4e-179 633.6 505 62.0
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 3.2e-179 632.5 522 61.9
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 3.2e-179 632.5 529 61.1
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.2e-179 632.1 528 61.7
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 4.2e-179 632.1 529 61.1
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.2e-178 630.6 545 58.3
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 2.1e-178 629.8 528 60.2
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 7.9e-178 627.9 535 58.7
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.8e-177 626.7 545 59.8
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 3.9e-177 625.5 529 59.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 6.7e-177 624.8 561 57.9
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.3e-176 622.1 460 66.1
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 4.3e-176 622.1 528 59.1
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 7.4e-176 621.3 536 60.3
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 1.3e-175 620.5 530 58.5
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 1.6e-175 620.2 543 59.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.1e-175 619.8 462 65.2
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 2.8e-175 619.4 489 64.0
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.7e-175 619.0 552 57.4
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.1e-174 617.5 528 60.8
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 2.4e-174 616.3 516 60.1
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.4e-174 616.3 526 58.9
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.1e-174 615.9 589 54.0
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 3.1e-174 615.9 485 63.3
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.1e-174 615.9 546 59.2
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 5.3e-174 615.1 556 57.6
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 9.0e-174 614.4 550 58.9
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.2e-173 614.0 538 58.0
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 1.5e-173 613.6 500 61.6
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.6e-173 611.3 558 55.2
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.2e-172 609.8 550 56.7
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 2.2e-172 609.8 550 56.7
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 2.2e-172 609.8 527 58.6
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 6.5e-172 608.2 465 63.9
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 8.4e-172 607.8 509 61.5
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 1.9e-171 606.7 548 56.2
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.9e-171 606.7 537 57.4
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 5.5e-171 605.1 535 58.7
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.2e-170 604.0 547 57.4
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.2e-170 604.0 529 57.5
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 1.6e-170 603.6 503 61.8
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 2.1e-170 603.2 506 60.1
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 4.6e-170 602.1 497 61.4
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 6.0e-170 601.7 471 63.5
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 1.3e-169 600.5 576 55.0
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.8e-169 600.1 521 59.9
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.8e-169 600.1 531 58.9
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 2.3e-169 599.7 527 57.3
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 5.1e-169 598.6 526 58.4
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 6.7e-169 598.2 501 61.3
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 1.1e-168 597.4 526 56.8
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.5e-168 597.0 488 62.1
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 5.7e-168 595.1 626 50.6
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 3.1e-166 589.3 497 59.4
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.3e-166 588.6 496 62.5
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.0e-164 584.3 573 53.1
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.7e-164 583.6 453 65.3
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.7e-164 583.6 502 58.2
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.7e-164 583.6 490 59.2
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 5.0e-164 582.0 486 57.8
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 5.0e-164 582.0 502 58.6
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.4e-163 580.5 485 59.6
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 1.9e-163 580.1 482 60.2
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 5.5e-163 578.6 487 58.5
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 5.5e-163 578.6 488 61.5
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 3.5e-162 575.9 487 58.5
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 6.1e-162 575.1 491 58.5
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 6.7e-161 571.6 493 58.8
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.7e-161 571.6 475 61.5
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 6.7e-161 571.6 488 58.2
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.5e-160 569.7 490 58.0
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 6.3e-159 565.1 510 57.6
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 1.1e-158 564.3 528 56.2
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.8e-158 563.5 490 58.0
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 2.0e-157 560.1 485 58.4
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.3e-156 557.4 548 54.6
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 1.7e-156 557.0 496 57.5
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.5e-155 552.0 508 56.3
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 3.6e-154 549.3 473 60.0
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.4e-153 547.4 625 48.3
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 4.1e-150 535.8 494 55.1
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 2.0e-149 533.5 514 54.5
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.9e-147 526.9 418 62.7
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.6e-146 523.9 529 52.2
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 8.8e-145 518.1 539 53.8
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 4.4e-144 515.8 500 52.8
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.7e-143 513.8 491 54.0
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 4.5e-141 505.8 517 51.6
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 5.5e-139 498.8 489 53.6
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.2e-138 497.7 387 65.6
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 2.3e-137 493.4 490 52.7
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 2.6e-136 490.0 486 52.5
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 3.5e-133 479.6 527 49.0
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.5e-131 474.2 496 53.8
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 5.5e-131 472.2 436 54.1
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 7.2e-131 471.9 500 51.2
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.2e-128 464.5 399 59.9
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 7.5e-128 461.8 394 59.9
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.6e-122 444.1 531 48.8
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 8.0e-122 441.8 430 53.0
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.3e-121 440.3 452 50.0
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 4.4e-120 436.0 500 47.0
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 6.3e-119 432.2 505 46.3
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 6.3e-119 432.2 454 51.8
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 2.1e-114 417.2 492 45.9
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 2.8e-114 416.8 328 61.9
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 2.3e-108 397.1 394 49.0
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 1.6e-106 391.0 330 58.8
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 1.6e-106 391.0 394 53.0
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 5.2e-105 386.0 339 56.9
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.7e-103 379.8 341 54.8
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 3.7e-103 379.8 334 57.5
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 2.1e-98 364.0 323 57.6
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 4.7e-98 362.8 342 55.8
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.4e-94 350.5 643 34.8
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.3e-92 344.0 291 59.8
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 5.2e-89 332.8 414 47.3
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.6e-88 330.5 300 55.0
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 2.9e-87 327.0 421 45.1
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.4e-80 303.5 275 53.8
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 2.4e-78 297.4 258 60.1
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 3.4e-72 276.9 235 57.4
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-71 275.0 195 65.1
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 7.1e-70 269.2 435 38.4
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-69 268.5 345 43.5
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 6.0e-69 266.2 226 57.1
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 1.6e-61 241.5 613 29.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.4e-57 227.6 485 34.0
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.2e-54 217.2 164 64.6
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.5e-53 213.8 164 63.4
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.0e-52 212.2 122 82.0
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 8.7e-52 209.1 138 71.7
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 2.5e-51 207.6 118 83.9
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.3e-51 206.8 204 52.9
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.1e-50 204.5 171 56.1
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 2.9e-47 194.1 118 75.4
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.4e-46 191.8 169 56.8
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 7.2e-46 189.5 118 75.4
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 2.9e-39 167.5 118 66.9
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.8e-39 167.2 118 68.6
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 5.0e-39 166.8 188 48.4
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.6e-35 154.5 118 64.4
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.2e-31 141.4 140 53.6
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 2.1e-29 134.8 83 73.5
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-27 129.0 90 68.9
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.3e-23 115.5 79 70.9
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.7e-23 115.2 123 48.8
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 7.2e-22 109.8 76 59.2
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 2.7e-13 81.3 67 52.2
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 8.0e-13 79.7 73 53.4
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 2.3e-12 78.2 73 52.1
Oeu000968.1 Olea europaea HOM05D004385 ORTHO05D005245 8.3e-10 69.7 62 54.8


User provided reference genes

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