Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03218 Selenicereus undatus HOM05D003771 ORTHO05D004396 0.0e+00 1930.2 1008 100.0
Ah.04g162600 Amaranthus hybridus HOM05D003771 ORTHO05D004396 0.0e+00 1654.4 985 87.4
AUR62014286 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1596.6 1076 79.1
Dinv12623 Davidia involucrata HOM05D003771 ORTHO05D004396 0.0e+00 1584.7 1007 81.7
GSVIVG01022289001 Vitis vinifera HOM05D003771 ORTHO05D004396 0.0e+00 1584.3 1011 81.1
Atru.chr12.1314 Acer truncatum HOM05D003771 ORTHO05D004396 0.0e+00 1577.4 1008 81.1
QL11p007303 Quercus lobata HOM05D003771 ORTHO05D004396 0.0e+00 1571.2 1021 80.0
Nitab4.5_0000019g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 0.0e+00 1560.0 1009 80.4
CSS0004980 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 0.0e+00 1559.7 1012 80.4
Eucgr.E04317 Eucalyptus grandis HOM05D003771 ORTHO05D004396 0.0e+00 1555.4 1007 80.1
RcHm_v2.0_Chr4g0384941 Rosa chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1555.0 1002 80.4
CsaV3_4G031470 Cucumis sativus L. HOM05D003771 ORTHO05D004396 0.0e+00 1550.8 1005 79.7
DCAR_020453 Daucus carota HOM05D003771 ORTHO05D004396 0.0e+00 1550.8 1006 80.6
CiPaw.15G162500 Carya illinoinensis HOM05D003771 ORTHO05D004396 0.0e+00 1550.0 1006 79.5
Cc06_g23760 Coffea canephora HOM05D003771 ORTHO05D004396 0.0e+00 1547.7 1011 80.9
MD04G1002300 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1547.3 1002 80.2
MELO3C009070.2 Cucumis melo HOM05D003771 ORTHO05D004396 0.0e+00 1546.9 1005 80.1
Potri.018G149400 Populus trichocarpa HOM05D003771 ORTHO05D004396 0.0e+00 1544.6 1009 79.6
CANSAT64G2070 Cannabis sativa HOM05D003771 ORTHO05D004396 0.0e+00 1543.9 1006 79.7
FvH4_4g00210 Fragaria vesca HOM05D003771 ORTHO05D004396 0.0e+00 1543.5 1002 80.1
TWI34G0561 Tripterygium wilfordii HOM05D003771 ORTHO05D004396 0.0e+00 1541.9 1008 80.0
AUR62034148 Chenopodium quinoa HOM05D003771 ORTHO05D004396 0.0e+00 1540.8 1013 80.8
Manes.02G223900 Manihot esculenta HOM05D003771 ORTHO05D004396 0.0e+00 1540.4 1005 80.5
ClCG04G000570 Citrullus lanatus HOM05D003771 ORTHO05D004396 0.0e+00 1538.9 1005 79.6
CAN.G587.52 Capsicum annuum HOM05D003771 ORTHO05D004396 0.0e+00 1537.7 1009 79.3
FAN17G2138 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1537.3 1002 79.8
COL.COLO4_37655 Corchorus olitorius HOM05D003771 ORTHO05D004396 0.0e+00 1535.8 1007 79.6
Ciclev10007279m.g Citrus clementina HOM05D003771 ORTHO05D004396 0.0e+00 1533.9 1005 79.4
PGR044G2258 Punica granatum HOM05D003771 ORTHO05D004396 0.0e+00 1533.1 1008 79.8
Gorai.009G000200 Gossypium raimondii HOM05D003771 ORTHO05D004396 0.0e+00 1530.8 1005 79.5
Gohir.D05G000400 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1530.4 1005 79.5
Lj4g0002190 Lotus japonicus HOM05D003771 ORTHO05D004396 0.0e+00 1530.0 1005 78.7
FAN22G1465 Fragaria x ananassa HOM05D003771 ORTHO05D004396 0.0e+00 1526.5 1026 78.5
Thecc.09G205400 Theobroma cacao HOM05D003771 ORTHO05D004396 0.0e+00 1525.8 1006 78.8
Ca_17443_v3 Cicer arietinum L. HOM05D003771 ORTHO05D004396 0.0e+00 1524.6 1005 78.6
Sopen05g020060 Solanum pennellii HOM05D003771 ORTHO05D004396 0.0e+00 1521.5 1006 78.7
MD15G1427900 Malus domestica HOM05D003771 ORTHO05D004396 0.0e+00 1520.0 1005 78.5
Migut.L01925 Erythranthe guttata HOM05D003771 ORTHO05D004396 0.0e+00 1519.6 1023 78.7
TAR383G0820 Trochodendron aralioides HOM05D003771 ORTHO05D004396 0.0e+00 1519.6 1029 77.6
Nn3g19428 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1518.8 1012 78.6
VMungo0251G3699 Vigna mungo HOM05D003771 ORTHO05D004396 0.0e+00 1517.7 1002 78.1
Sed0018603 Sechium edule HOM05D003771 ORTHO05D004396 0.0e+00 1517.3 1003 78.4
Duzib168G1435 Durio zibethinus HOM05D003771 ORTHO05D004396 0.0e+00 1511.5 1006 78.4
Glyma.08G026700 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1511.5 1002 78.0
Lalb_Chr05g0223831 Lupinus albus HOM05D003771 ORTHO05D004396 0.0e+00 1510.7 1002 78.2
MSTRG.26513 Avicennia marina HOM05D003771 ORTHO05D004396 0.0e+00 1506.5 1022 79.0
Sabra18G0126200 Salix brachista HOM05D003771 ORTHO05D004396 0.0e+00 1506.5 1079 74.2
Phvul.002G302000 Phaseolus vulgaris HOM05D003771 ORTHO05D004396 0.0e+00 1505.0 1003 77.8
Medtr8g100105 Medicago truncatula HOM05D003771 ORTHO05D004396 0.0e+00 1504.6 1008 78.2
Rhsim01G0106700 Rhododendron simsii HOM05D003771 ORTHO05D004396 0.0e+00 1503.4 1093 74.2
Actinidia02465 Actinidia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1501.9 983 80.0
Glyma.05G220300 Glycine max HOM05D003771 ORTHO05D004396 0.0e+00 1501.1 1002 77.4
Aqoxy3G04250 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 0.0e+00 1497.3 1013 77.3
Psat7g020760 Pisum sativum HOM05D003771 ORTHO05D004396 0.0e+00 1496.9 1026 76.6
Nn1g00173 Nelumbo nucifera HOM05D003771 ORTHO05D004396 0.0e+00 1496.1 1014 77.5
EL10Ac4g08749 Beta vulgaris HOM05D003771 ORTHO05D004396 0.0e+00 1494.6 889 88.1
arahy.Tifrunner.gnm1.ann1.XKPK2Z Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1492.2 1009 78.0
SalBow5G2520 Salvia bowleyana HOM05D003771 ORTHO05D004396 0.0e+00 1489.2 1061 75.4
Cpa.g.sc91.64 Carica papaya HOM05D003771 ORTHO05D004396 0.0e+00 1488.4 1007 77.9
Lj5A798G49 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1485.7 1021 77.0
SGA_v2.0_scaffold21G09599 Striga asiatica HOM05D003771 ORTHO05D004396 0.0e+00 1485.3 1014 77.9
AL3G44140 Arabidopsis lyrata HOM05D003771 ORTHO05D004396 0.0e+00 1484.9 1008 77.2
Gohir.A05G000200 Gossypium hirsutum HOM05D003771 ORTHO05D004396 0.0e+00 1484.2 983 79.0
BcaB08g35516 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1482.6 1008 76.9
BcaC04g20648 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1481.5 1006 76.6
PSO063G0153 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1480.3 1014 76.5
Carub.0013s0005 Capsella rubella HOM05D003771 ORTHO05D004396 0.0e+00 1478.8 1008 76.8
arahy.Tifrunner.gnm1.ann1.TH49EC Arachis hypogaea HOM05D003771 ORTHO05D004396 0.0e+00 1477.6 1028 76.4
HanXRQChr02g0040541 Helianthus annuus HOM05D003771 ORTHO05D004396 0.0e+00 1477.6 1005 77.0
Sp6g13880 Schrenkiella parvula HOM05D003771 ORTHO05D004396 0.0e+00 1477.6 1011 76.7
AT2G07360 Arabidopsis thaliana HOM05D003771 ORTHO05D004396 0.0e+00 1476.5 1010 77.0
CARHR104050 Cardamine hirsuta HOM05D003771 ORTHO05D004396 0.0e+00 1475.3 1008 76.8
Thhalv10012482m.g Eutrema salsugineum HOM05D003771 ORTHO05D004396 0.0e+00 1474.1 1011 76.8
ECA233G1083 Erigeron canadensis HOM05D003771 ORTHO05D004396 0.0e+00 1473.8 1005 77.0
BcaC01g06134 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1469.9 1010 76.0
PSO782G3876 Papaver somniferum HOM05D003771 ORTHO05D004396 0.0e+00 1469.1 1020 75.8
THA.LOC104808936 Tarenaya hassleriana HOM05D003771 ORTHO05D004396 0.0e+00 1467.2 1012 76.8
Aa31sc328G10 Aethionema arabicum HOM05D003771 ORTHO05D004396 0.0e+00 1464.1 1038 75.0
BraA03t10897Z Brassica rapa HOM05D003771 ORTHO05D004396 0.0e+00 1463.0 1014 76.0
A03p16060 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1462.6 1014 76.0
Sc06g0002410 Simmondsia chinensis HOM05D003771 ORTHO05D004396 0.0e+00 1461.8 878 86.7
C03p18900 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1459.9 1012 75.8
BcaB01g04159 Brassica carinata HOM05D003771 ORTHO05D004396 0.0e+00 1458.7 1012 76.0
BolC3t14282H Brassica oleracea HOM05D003771 ORTHO05D004396 0.0e+00 1453.0 1032 74.4
CSS0043776 Camellia sinensis var. sinensis HOM05D003771 ORTHO05D004396 0.0e+00 1449.1 1109 70.8
Lsat_1_v5_gn_1_6680 Lactuca sativa HOM05D003771 ORTHO05D004396 0.0e+00 1444.1 1011 75.9
Prupe.7G042600 Prunus persica HOM05D003771 ORTHO05D004396 0.0e+00 1437.9 1002 75.6
ATR0626G390 Amborella trichopoda HOM05D003771 ORTHO05D004396 0.0e+00 1419.4 1013 73.2
A10p09550 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1391.7 1007 73.3
Os03g0265700 Oryza sativa ssp. japonica HOM05D003771 ORTHO05D004396 0.0e+00 1390.2 1008 72.3
Oeu008632.1 Olea europaea HOM05D003771 ORTHO05D004396 0.0e+00 1384.0 914 80.0
Zm00001eb011800 Zea mays HOM05D003771 ORTHO05D004396 0.0e+00 1365.9 1007 71.9
Hund19352 Selenicereus undatus HOM05D003771 ORTHO05D004396 0.0e+00 1349.0 915 80.7
Peaxi162Scf00322g01517 Petunia axillaris HOM05D003771 ORTHO05D004396 0.0e+00 1330.1 869 79.9
HPP92_018040 Vanilla planifolia HOM05D003771 ORTHO05D004396 0.0e+00 1314.3 919 74.8
SEGI_40037 Sequoiadendron giganteum HOM05D003771 ORTHO05D004396 0.0e+00 1301.2 1016 68.8
Lju50C19G3 Lonicera japonica HOM05D003771 ORTHO05D004396 0.0e+00 1281.9 890 77.0
Haze_19080 Corylus avellana HOM05D003771 ORTHO05D004396 0.0e+00 1228.4 853 75.4
TPR.G25458 Trifolium pratense HOM05D003771 ORTHO05D004396 0.0e+00 1128.6 731 79.6
C09p41070 Brassica napus HOM05D003771 ORTHO05D004396 0.0e+00 1089.7 738 77.2
SMO367G0435 Selaginella moellendorffii HOM05D003771 ORTHO05D004396 0.0e+00 1080.5 1021 59.7
Mapoly0015s0202 Marchantia polymorpha HOM05D003771 ORTHO05D004396 0.0e+00 1080.1 1023 58.5
Pp3c15_18470 Physcomitrium patens HOM05D003771 ORTHO05D004396 5.6e-304 1047.7 1022 56.9
CDE07G1201 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 2.8e-287 992.3 681 75.9
AagrBONN_evm.TU.Sc2ySwM_228.3008 Anthoceros agrestis HOM05D003771 ORTHO05D004396 2.8e-279 965.7 844 61.1
Lsat_1_v5_gn_8_69981 Lactuca sativa HOM05D003771 ORTHO05D004396 1.4e-278 963.4 806 66.6
unitig_899.g15422 Utricularia gibba HOM05D003771 ORTHO05D004396 9.0e-270 934.1 684 73.8
FAN12G2055 Fragaria x ananassa HOM05D003771 ORTHO05D004396 2.7e-258 896.0 608 78.3
Nitab4.5_0006114g0010 Nicotiana tabacum HOM05D003771 ORTHO05D004396 1.0e-257 894.0 616 76.6
vmacro20748 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 5.9e-245 851.7 544 82.5
Aqoxy3G02691 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 9.1e-238 827.8 499 84.0
AagrBONN_evm.TU.Sc2ySwM_369.331 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.1e-185 654.8 563 62.0
FAN12G3555 Fragaria x ananassa HOM05D003771 ORTHO05D004396 5.1e-180 636.0 420 77.9
HanXRQChr05g0138991 Helianthus annuus HOM05D003771 ORTHO05D004396 3.9e-156 556.6 460 65.7
MD07G1055500 Malus domestica HOM05D003771 ORTHO05D004396 4.3e-155 553.1 476 66.0
HanXRQChr05g0138111 Helianthus annuus HOM05D003771 ORTHO05D004396 4.9e-151 539.7 369 75.1
MBI14_g32940_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 5.3e-129 466.5 338 72.5
AagrBONN_evm.TU.Sc2ySwM_228.2998 Anthoceros agrestis HOM05D003771 ORTHO05D004396 1.7e-122 444.9 294 75.2
BraA10t43030Z Brassica rapa HOM05D003771 ORTHO05D004396 1.4e-105 388.7 274 73.7
BolC9t56986H Brassica oleracea HOM05D003771 ORTHO05D004396 1.3e-103 382.1 290 69.7
RcHm_v2.0_Chr4g0384821 Rosa chinensis HOM05D003771 ORTHO05D004396 1.5e-102 378.6 220 83.6
Aqoxy3G02692 Aquilegia oxysepala HOM05D003771 ORTHO05D004396 6.6e-95 353.2 342 59.6
Zm00001eb307240 Zea mays HOM05D003771 ORTHO05D004396 8.0e-93 346.3 202 84.2
RcHm_v2.0_Chr4g0384831 Rosa chinensis HOM05D003771 ORTHO05D004396 1.5e-91 342.0 266 71.4
C09p41060 Brassica napus HOM05D003771 ORTHO05D004396 6.4e-90 336.7 202 82.7
TPR.G14800 Trifolium pratense HOM05D003771 ORTHO05D004396 1.1e-89 335.9 250 72.8
unitig_899.g15421 Utricularia gibba HOM05D003771 ORTHO05D004396 1.7e-82 312.0 246 69.1
Haze_19082 Corylus avellana HOM05D003771 ORTHO05D004396 3.3e-78 297.7 232 70.3
CDE07G0913 Ceratophyllum demersum HOM05D003771 ORTHO05D004396 1.1e-73 282.7 227 67.8
vmacro20749 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 2.4e-73 281.6 253 62.5
vmacro20747 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.3e-71 275.8 316 51.9
CBR_g10825 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-62 245.4 399 39.8
Zm00001eb154330 Zea mays HOM05D003771 ORTHO05D004396 9.6e-62 243.0 142 85.9
MD07G1055200 Malus domestica HOM05D003771 ORTHO05D004396 1.9e-54 218.8 187 65.2
arahy.Tifrunner.gnm1.ann1.Q9DYE1 Arachis hypogaea HOM05D003771 ORTHO05D004396 2.4e-49 201.8 117 82.1
arahy.Tifrunner.gnm1.ann1.523GVR Arachis hypogaea HOM05D003771 ORTHO05D004396 3.2e-49 201.4 122 80.3
PSO782G3302 Papaver somniferum HOM05D003771 ORTHO05D004396 2.3e-47 195.3 200 58.5
AagrBONN_evm.TU.Sc2ySwM_228.2997 Anthoceros agrestis HOM05D003771 ORTHO05D004396 3.0e-47 194.9 179 55.9
MD07G1055300 Malus domestica HOM05D003771 ORTHO05D004396 2.5e-46 191.8 236 49.6
Psat6g005640 Pisum sativum HOM05D003771 ORTHO05D004396 7.6e-43 180.3 136 71.3
Oeu036957.1 Olea europaea HOM05D003771 ORTHO05D004396 2.3e-39 168.7 113 74.3
COL.COLO4_38524 Corchorus olitorius HOM05D003771 ORTHO05D004396 3.3e-38 164.9 112 75.0
Rhsim01G0108400 Rhododendron simsii HOM05D000041 ORTHO05D000452 1.2e-32 146.4 129 62.8
arahy.Tifrunner.gnm1.ann1.F6FNE6 Arachis hypogaea HOM05D003771 ORTHO05D004396 2.1e-32 145.6 90 76.7
Peaxi162Scf00322g01518 Petunia axillaris HOM05D003771 ORTHO05D004396 1.3e-31 142.9 123 65.0
Psat0s1568g0040 Pisum sativum HOM05D003771 ORTHO05D004396 8.7e-31 140.2 90 78.9
AagrBONN_evm.TU.Sc2ySwM_228.2996 Anthoceros agrestis HOM05D003771 ORTHO05D004396 6.9e-28 130.6 110 60.0
AagrBONN_evm.TU.Sc2ySwM_369.330 Anthoceros agrestis HOM05D003771 ORTHO05D004396 6.9e-28 130.6 110 60.0
Lsat_1_v5_gn_5_155680 Lactuca sativa HOM05D003771 ORTHO05D004396 3.4e-27 128.3 120 60.8
HPP92_018039 Vanilla planifolia HOM05D003771 ORTHO05D004396 3.8e-26 124.8 113 61.9
Lju50A19G12 Lonicera japonica HOM05D003771 ORTHO05D004396 4.2e-25 121.3 94 68.1
VMungo0331G1237 Vigna mungo HOM05D003771 ORTHO05D004396 7.9e-24 117.1 74 77.0
VMungo1209G0002 Vigna mungo HOM05D003771 ORTHO05D004396 6.3e-21 107.5 91 64.8
MCO15G147 Micromonas commoda HOM05D003771 ORTHO05D004396 8.2e-21 107.1 490 26.1
AagrBONN_evm.TU.Sc2ySwM_228.2999 Anthoceros agrestis HOM05D003771 ORTHO05D004396 4.1e-20 104.8 205 36.6
AagrBONN_evm.TU.Sc2ySwM_369.332 Anthoceros agrestis HOM05D003771 ORTHO05D004396 6.9e-20 104.0 200 37.0
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.2e-19 103.2 69 82.6
CBR_g10827 Chara braunii HOM05D003771 ORTHO05D004396 1.5e-19 102.8 310 30.0
RcHm_v2.0_Chr2g0143661 Rosa chinensis HOM05D003771 ORTHO05D010311 1.3e-18 99.8 74 66.2
Cre08.g384864 Chlamydomonas reinhardtii HOM05D003771 ORTHO05D004396 6.5e-18 97.4 904 23.2
HanXRQChr05g0138121 Helianthus annuus HOM05D003771 ORTHO05D004396 6.5e-18 97.4 59 74.6
Nitab4.5_0006114g0020 Nicotiana tabacum HOM05D003771 ORTHO05D004396 6.5e-18 97.4 64 75.0
vmacro20746 Vaccinium macrocarpon HOM05D003771 ORTHO05D004396 1.4e-17 96.3 70 68.6
Lsat_1_v5_gn_4_142760 Lactuca sativa HOM05D003771 ORTHO05D012343 2.1e-16 92.4 135 47.4
Lsat_1_v5_gn_7_78841 Lactuca sativa HOM05D003771 ORTHO05D004396 4.6e-16 91.3 164 42.1
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 6.1e-16 90.9 76 68.4
Psat3g071280 Pisum sativum HOM05D000062 ORTHO05D004396 6.1e-16 90.9 91 58.2
Oeu036958.1 Olea europaea HOM05D003771 ORTHO05D004396 2.3e-15 89.0 56 76.8
VMungo0331G1533 Vigna mungo HOM05D003771 ORTHO05D004396 3.9e-15 88.2 76 59.2
Psat0ss6263g0280 Pisum sativum HOM05D041104 ORTHO05D004396 5.1e-15 87.8 109 50.5
Psat5g077000 Pisum sativum HOM05D000062 ORTHO05D004396 4.4e-14 84.7 129 43.4
MBI05_g48085_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D004396 6.9e-12 77.4 66 65.2
MD07G1055400 Malus domestica HOM05D003771 ORTHO05D004396 6.9e-12 77.4 41 95.1
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 1.5e-11 76.3 80 56.2
MBI14_g31102_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D012924 4.2e-09 68.2 51 64.7
arahy.Tifrunner.gnm1.ann1.ACA5RJ Arachis hypogaea HOM05D003771 ORTHO05D004396 1.2e-08 66.6 116 39.7
MBI05_g23486_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 3.9e-07 61.6 49 69.4


User provided reference genes

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