Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.3e-79 299.7 153 100.0
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 1.4e-65 253.1 150 82.7
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 4.8e-58 228.0 150 77.3
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 4.1e-57 224.9 147 75.5
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 9.1e-57 223.8 147 74.8
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.7e-56 222.2 147 72.8
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 5.9e-56 221.1 146 72.6
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.0e-55 220.3 146 73.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.9e-55 218.8 147 72.1
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 3.8e-55 218.4 147 72.8
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.0e-55 218.0 147 71.4
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 5.0e-55 218.0 149 72.5
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 8.5e-55 217.2 147 72.1
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 8.5e-55 217.2 148 70.3
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.5e-54 216.5 147 72.1
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.5e-54 215.7 147 70.7
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 4.2e-54 214.9 147 68.0
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.2e-54 214.2 147 68.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 7.2e-54 214.2 147 70.1
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 9.4e-54 213.8 146 69.2
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.2e-53 213.4 147 68.0
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 2.1e-53 212.6 147 70.7
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 2.1e-53 212.6 147 67.3
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 3.6e-53 211.8 147 68.0
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 4.7e-53 211.5 147 68.7
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 8.0e-53 210.7 147 68.7
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 8.0e-53 210.7 146 67.1
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 8.0e-53 210.7 146 67.1
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.0e-53 210.7 145 69.7
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.0e-52 210.3 147 69.4
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.0e-52 210.3 146 69.2
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.8e-52 209.5 147 68.7
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.8e-52 209.5 145 69.0
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 1.8e-52 209.5 145 69.0
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 1.8e-52 209.5 145 69.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 66.0
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.3e-52 209.1 147 70.7
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 68.7
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 3.0e-52 208.8 147 66.7
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 3.0e-52 208.8 145 69.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 4.0e-52 208.4 150 69.3
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 5.2e-52 208.0 147 68.7
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 6.8e-52 207.6 147 66.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.8e-52 207.6 147 64.6
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 6.8e-52 207.6 147 67.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 6.8e-52 207.6 147 66.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 8.8e-52 207.2 146 67.8
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 8.8e-52 207.2 146 65.8
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.2e-51 206.8 147 64.6
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.5e-51 206.5 147 66.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.5e-51 206.5 146 67.1
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 1.5e-51 206.5 147 70.1
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.0e-51 206.1 150 68.7
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 2.6e-51 205.7 154 64.3
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.6e-51 205.7 147 66.0
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.7e-51 204.5 147 64.6
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 5.7e-51 204.5 146 67.8
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 5.7e-51 204.5 146 68.5
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 7.5e-51 204.1 146 67.1
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.3e-50 203.4 145 66.2
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.3e-50 203.4 145 66.2
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 1.7e-50 203.0 145 66.2
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.7e-50 203.0 147 65.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 2.2e-50 202.6 148 64.2
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 2.2e-50 202.6 147 66.7
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 3.7e-50 201.8 149 63.1
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.7e-50 201.8 147 66.7
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 4.8e-50 201.4 157 61.8
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 4.8e-50 201.4 149 62.4
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 6.3e-50 201.1 145 65.5
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.3e-50 201.1 150 62.7
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 6.3e-50 201.1 146 68.5
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.4e-49 199.9 147 64.6
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 1.8e-49 199.5 147 66.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.4e-49 199.1 147 63.3
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 5.4e-49 198.0 147 65.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 7.0e-49 197.6 158 61.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 7.0e-49 197.6 140 67.9
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 9.1e-49 197.2 147 65.3
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 9.1e-49 197.2 148 66.2
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.2e-48 196.8 141 64.5
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 2.7e-48 195.7 157 61.8
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 7.7e-48 194.1 147 63.9
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 1.3e-47 193.4 147 64.6
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.3e-47 193.4 158 60.8
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 1.7e-47 193.0 142 63.4
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-47 193.0 142 63.4
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-47 193.0 142 63.4
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.7e-47 193.0 142 63.4
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 2.9e-47 192.2 147 61.2
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.9e-47 192.2 144 62.5
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.9e-47 192.2 144 62.5
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 3.8e-47 191.8 140 64.3
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.8e-47 191.8 142 62.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 3.8e-47 191.8 219 49.8
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.5e-46 189.9 147 59.9
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 1.9e-46 189.5 147 61.2
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.5e-46 189.1 134 69.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 7.2e-46 187.6 145 62.1
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.6e-45 186.4 147 61.2
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 2.1e-45 186.0 149 60.4
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 4.7e-45 184.9 148 57.4
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 6.1e-45 184.5 148 59.5
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 6.1e-45 184.5 149 59.7
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.0e-45 184.1 144 62.5
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 1.0e-44 183.7 140 57.9
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.4e-44 183.3 166 56.0
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.8e-44 183.0 145 60.7
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 4.0e-44 181.8 148 58.1
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 8.8e-44 180.6 143 60.8
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 8.8e-44 180.6 148 57.4
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.5e-43 179.9 143 59.4
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 1.5e-43 179.9 147 57.8
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.5e-43 179.9 148 58.1
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.5e-43 179.9 147 57.1
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 2.6e-43 179.1 146 59.6
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.4e-43 178.3 143 59.4
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 4.4e-43 178.3 179 52.5
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 5.7e-43 177.9 148 56.1
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.7e-42 176.4 148 56.1
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 2.2e-42 176.0 140 59.3
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 2.8e-42 175.6 145 63.4
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 4.9e-42 174.9 143 59.4
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.8e-41 172.9 146 56.2
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.4e-41 172.6 146 57.5
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.4e-41 172.6 146 57.5
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 4.1e-41 171.8 143 56.6
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 4.1e-41 171.8 190 50.0
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-40 170.2 142 57.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-40 170.2 142 57.7
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 1.2e-40 170.2 142 57.7
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 1.2e-40 170.2 148 54.1
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 4.5e-40 168.3 142 57.0
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.9e-39 165.6 143 56.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.5e-38 163.3 142 55.6
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 6.8e-36 154.5 148 56.8
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 2.6e-35 152.5 142 54.9
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.4e-33 146.7 148 50.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.6e-32 143.3 107 58.9
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.6e-32 143.3 87 75.9
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.9e-32 141.4 86 79.1
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 2.3e-31 139.4 151 48.3
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 2.3e-31 139.4 105 61.9
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 2.3e-31 139.4 105 61.9
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.5e-30 136.0 86 75.6
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 3.3e-30 135.6 104 56.7
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 3.3e-30 135.6 97 66.0
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.0e-28 130.6 132 50.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.4e-28 130.2 105 59.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 3.1e-28 129.0 103 62.1
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 5.8e-27 124.8 132 49.2
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 5.8e-27 124.8 132 49.2
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.6e-24 116.7 101 53.5
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.0e-24 116.3 147 40.8
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 3.9e-23 112.1 141 39.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 6.6e-23 111.3 146 39.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 5.6e-22 108.2 82 58.5
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 1.6e-21 106.7 148 43.2
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.8e-21 105.9 100 52.0
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 6.8e-20 101.3 86 51.2
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 3.4e-19 99.0 136 33.1
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.7e-18 95.5 138 33.3
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.0e-15 87.4 149 31.5
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.1e-14 84.0 146 34.9
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 4.3e-14 82.0 52 69.2
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-13 80.5 70 55.7
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.8e-12 76.6 106 30.2
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 3.4e-11 72.4 102 37.3
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 9.9e-11 70.9 39 74.4
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 1.3e-10 70.5 83 43.4
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 8.4e-10 67.8 132 28.0
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.4e-09 66.2 129 24.8
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 1.6e-08 63.5 44 68.2
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 4.6e-08 62.0 132 26.5
MCO09G689 Micromonas commoda HOM05D003922 ORTHO05D004492 1.1e-06 57.4 79 35.4


User provided reference genes

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