Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 4.9e-114 414.5 205 100.0
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 9.6e-70 267.3 158 81.0
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 4.0e-68 261.9 166 77.1
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 5.5e-65 251.5 153 79.7
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.2e-64 250.4 181 69.1
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 2.7e-64 249.2 178 69.7
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 1.8e-63 246.5 181 68.0
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 3.9e-63 245.4 162 74.7
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 5.1e-63 245.0 168 71.4
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 6.7e-63 244.6 151 78.8
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 8.7e-63 244.2 163 73.6
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 8.7e-63 244.2 176 69.3
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 1.1e-62 243.8 165 72.1
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 2.5e-62 242.7 186 67.2
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 7.4e-62 241.1 147 78.9
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 1.6e-61 240.0 168 72.0
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 2.1e-61 239.6 163 73.0
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 2.8e-61 239.2 173 68.8
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 2.8e-61 239.2 183 65.6
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 3.7e-61 238.8 182 68.7
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.7e-61 238.8 182 66.5
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 4.8e-61 238.4 165 72.1
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 4.8e-61 238.4 163 71.8
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 4.8e-61 238.4 191 63.9
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 4.8e-61 238.4 173 69.9
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 6.3e-61 238.0 168 71.4
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 6.3e-61 238.0 155 75.5
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 6.3e-61 238.0 163 72.4
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 6.3e-61 238.0 163 73.0
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 1.1e-60 237.3 164 72.6
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 1.1e-60 237.3 165 71.5
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 1.4e-60 236.9 168 70.2
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.4e-60 236.9 173 69.4
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.8e-60 236.5 182 65.9
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 1.8e-60 236.5 168 70.2
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 2.4e-60 236.1 155 75.5
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 3.1e-60 235.7 163 69.9
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 3.1e-60 235.7 163 72.4
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 3.1e-60 235.7 163 71.8
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 4.1e-60 235.3 167 70.7
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 4.1e-60 235.3 147 78.2
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 4.1e-60 235.3 163 73.0
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.1e-60 235.3 163 71.2
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 5.3e-60 235.0 182 65.4
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 5.3e-60 235.0 173 68.2
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 5.3e-60 235.0 167 71.3
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 6.9e-60 234.6 165 71.5
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 9.0e-60 234.2 160 74.4
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 1.2e-59 233.8 156 75.0
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 2.0e-59 233.0 170 69.4
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 3.4e-59 232.3 155 74.2
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 3.4e-59 232.3 147 77.6
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 4.5e-59 231.9 173 68.8
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 5.9e-59 231.5 147 76.9
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 5.9e-59 231.5 188 66.0
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 7.6e-59 231.1 165 71.5
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 7.6e-59 231.1 147 76.9
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 7.6e-59 231.1 165 70.9
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 1.0e-58 230.7 186 65.1
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.0e-58 230.7 174 66.7
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 1.7e-58 229.9 167 70.1
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 1.7e-58 229.9 164 70.1
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 1.7e-58 229.9 163 67.5
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 2.2e-58 229.6 182 64.3
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 2.2e-58 229.6 189 64.0
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 2.2e-58 229.6 148 75.0
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 2.9e-58 229.2 211 58.3
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 3.8e-58 228.8 180 66.7
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 6.5e-58 228.0 161 73.3
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.9e-57 226.5 162 69.8
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 1.9e-57 226.5 163 68.7
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 3.2e-57 225.7 165 67.9
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 9.3e-57 224.2 174 65.5
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.2e-56 223.8 153 69.3
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 4.6e-56 221.9 145 71.0
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 6.1e-56 221.5 171 64.9
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 1.0e-55 220.7 186 64.0
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 2.3e-55 219.5 150 67.3
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 3.9e-55 218.8 149 71.8
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 2.5e-54 216.1 152 72.4
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 5.7e-54 214.9 180 61.1
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 9.7e-54 214.2 153 65.4
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.3e-53 213.8 170 62.4
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 2.8e-53 212.6 163 66.9
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 2.8e-53 212.6 165 65.5
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 4.8e-53 211.8 188 61.2
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.1e-52 210.7 145 75.2
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 1.8e-52 209.9 139 77.0
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 2.4e-52 209.5 145 69.7
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 3.1e-52 209.1 142 71.1
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 4.1e-52 208.8 183 60.1
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 1.5e-51 206.8 173 59.5
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 2.0e-51 206.5 145 66.9
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 2.6e-51 206.1 145 66.9
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 7.7e-51 204.5 179 60.9
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 7.7e-51 204.5 163 63.8
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.7e-50 203.4 157 61.1
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 3.8e-50 202.2 163 64.4
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 8.5e-50 201.1 147 68.0
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 1.9e-49 199.9 188 58.0
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.9e-49 199.9 154 60.4
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 3.2e-49 199.1 170 61.8
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 9.4e-49 197.6 163 57.7
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 4.6e-48 195.3 131 75.6
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 1.0e-47 194.1 179 57.5
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 1.8e-47 193.4 157 58.6
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 3.0e-47 192.6 162 62.3
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 5.1e-47 191.8 143 63.6
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.5e-46 190.3 150 63.3
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 1.5e-46 190.3 182 57.1
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.6e-46 189.5 157 59.9
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 4.4e-46 188.7 163 56.4
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 4.4e-46 188.7 165 55.8
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 2.8e-45 186.0 148 58.1
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 3.1e-44 182.6 130 64.6
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 6.9e-44 181.4 163 51.5
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 6.9e-44 181.4 149 56.4
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 1.7e-42 176.8 164 57.9
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 2.2e-42 176.4 149 61.7
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 5.5e-41 171.8 137 65.0
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 1.8e-39 166.8 184 50.0
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 6.7e-39 164.9 148 62.2
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 2.6e-35 152.9 115 62.6
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 3.5e-35 152.5 137 63.5
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 1.7e-34 150.2 165 49.7
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 6.5e-34 148.3 198 45.5
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 1.2e-30 137.5 102 65.7
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 1.3e-29 134.0 120 52.5
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 8.2e-29 131.3 125 56.8
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 1.4e-28 130.6 76 81.6
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 1.8e-28 130.2 101 60.4
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 2.0e-27 126.7 164 44.5
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 5.5e-25 118.6 72 76.4
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 1.2e-24 117.5 191 37.2
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 3.0e-23 112.8 146 44.5
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 1.1e-20 104.4 160 43.8
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 2.4e-20 103.2 126 47.6
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 6.1e-16 88.6 94 51.1
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.0e-15 85.9 73 60.3
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 2.0e-14 83.6 74 54.1
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.1e-12 75.9 53 67.9
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 2.7e-11 73.2 57 57.9
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 5.0e-10 68.9 49 65.3
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 2.3e-07 60.1 50 50.0


User provided reference genes

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