Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 2.9e-61 238.4 124 100.0
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.1e-50 201.1 124 81.5
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 5.1e-50 201.1 124 81.5
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 2.8e-48 195.3 124 79.0
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 6.3e-48 194.1 124 79.0
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 1.8e-47 192.6 124 79.0
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.6e-43 179.5 124 75.0
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.6e-43 179.5 123 78.9
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 7.9e-43 177.2 131 74.8
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 1.4e-42 176.4 129 75.2
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.3e-42 175.6 122 79.5
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.3e-42 175.6 122 77.9
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 3.0e-42 175.3 122 79.5
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 8.8e-42 173.7 129 74.4
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 2.0e-41 172.6 129 73.6
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 2.5e-41 172.2 128 75.0
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 4.3e-41 171.4 129 73.6
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 4.3e-41 171.4 122 78.7
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 4.3e-41 171.4 129 74.4
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.3e-40 169.9 129 74.4
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 1.3e-40 169.9 129 72.9
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 1.3e-40 169.9 129 73.6
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 1.3e-40 169.9 122 76.2
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.7e-40 169.5 129 75.2
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.7e-40 169.5 131 74.8
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 1.7e-40 169.5 129 72.9
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 1.7e-40 169.5 129 73.6
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 1.7e-40 169.5 129 73.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 2.2e-40 169.1 130 71.5
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 2.8e-40 168.7 130 71.5
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 3.7e-40 168.3 130 70.8
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 4.8e-40 167.9 124 73.4
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 4.8e-40 167.9 129 73.6
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 4.8e-40 167.9 130 73.1
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 4.8e-40 167.9 131 71.8
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 4.8e-40 167.9 132 70.5
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 6.3e-40 167.5 129 71.3
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 6.3e-40 167.5 129 71.3
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 8.2e-40 167.2 133 71.4
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.1e-39 166.8 135 71.9
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 1.1e-39 166.8 131 70.2
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 1.1e-39 166.8 124 70.2
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 1.1e-39 166.8 132 70.5
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.4e-39 166.4 130 72.3
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.4e-39 166.4 127 75.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.8e-39 166.0 135 71.1
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 1.8e-39 166.0 129 72.1
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 1.8e-39 166.0 127 74.0
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 1.8e-39 166.0 125 69.6
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 1.8e-39 166.0 125 69.6
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 2.4e-39 165.6 129 70.5
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 2.4e-39 165.6 131 71.0
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 2.4e-39 165.6 126 69.8
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 3.1e-39 165.2 132 73.5
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 4.1e-39 164.9 133 69.2
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 4.1e-39 164.9 133 69.2
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 4.1e-39 164.9 125 72.0
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 4.1e-39 164.9 130 70.8
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 5.3e-39 164.5 131 69.5
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 5.3e-39 164.5 126 69.0
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 5.3e-39 164.5 125 74.4
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 5.3e-39 164.5 127 70.1
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 5.3e-39 164.5 128 70.3
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 5.3e-39 164.5 126 69.0
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 6.9e-39 164.1 127 74.8
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 6.9e-39 164.1 126 71.4
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 9.1e-39 163.7 128 70.3
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 9.1e-39 163.7 127 69.3
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 1.2e-38 163.3 127 67.7
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 1.2e-38 163.3 133 65.4
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 1.5e-38 162.9 130 71.5
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.5e-38 162.9 130 71.5
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 1.5e-38 162.9 126 69.0
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 2.0e-38 162.5 132 68.9
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 2.0e-38 162.5 132 68.9
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 2.6e-38 162.2 131 69.5
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 2.6e-38 162.2 100 81.0
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 2.6e-38 162.2 121 71.1
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 3.4e-38 161.8 129 70.5
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 4.5e-38 161.4 129 67.4
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.5e-38 161.4 124 69.4
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 4.5e-38 161.4 124 69.4
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 4.5e-38 161.4 124 69.4
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 5.9e-38 161.0 124 71.8
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 7.7e-38 160.6 126 69.0
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 1.0e-37 160.2 127 71.7
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.0e-37 160.2 127 68.5
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.0e-37 160.2 125 71.2
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 1.0e-37 160.2 125 71.2
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.0e-37 160.2 121 70.2
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.7e-37 159.5 130 70.0
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.9e-37 158.7 124 68.5
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 2.9e-37 158.7 124 70.2
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 3.8e-37 158.3 131 67.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 3.8e-37 158.3 131 67.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 3.8e-37 158.3 131 67.9
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 6.5e-37 157.5 126 68.3
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 8.5e-37 157.1 126 68.3
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 1.1e-36 156.8 126 70.6
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 1.1e-36 156.8 126 70.6
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 1.1e-36 156.8 126 69.8
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 1.4e-36 156.4 131 69.5
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.9e-36 156.0 126 67.5
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 1.9e-36 156.0 122 68.9
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.2e-36 155.2 97 82.5
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 3.2e-36 155.2 129 71.3
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 3.2e-36 155.2 129 68.2
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 3.2e-36 155.2 124 69.4
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 4.2e-36 154.8 132 64.4
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 5.5e-36 154.5 129 66.7
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 5.5e-36 154.5 131 65.6
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 7.2e-36 154.1 101 75.2
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 1.6e-35 152.9 122 70.5
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 2.1e-35 152.5 119 70.6
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 2.7e-35 152.1 122 68.9
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 2.7e-35 152.1 122 69.7
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 4.7e-35 151.4 123 70.7
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 1.4e-34 149.8 122 68.0
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 1.4e-34 149.8 123 65.9
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.8e-34 149.4 122 68.9
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 5.1e-34 147.9 103 74.8
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 5.1e-34 147.9 122 66.4
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 6.7e-34 147.5 124 66.1
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 2.0e-33 146.0 125 64.8
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 2.6e-33 145.6 132 63.6
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 7.4e-33 144.1 121 68.6
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 9.7e-33 143.7 123 61.8
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 2.8e-32 142.1 124 66.1
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 1.1e-31 140.2 132 61.4
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 1.4e-31 139.8 127 63.0
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 1.2e-30 136.7 113 67.3
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 2.0e-30 136.0 124 63.7
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 3.8e-29 131.7 83 79.5
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 4.2e-28 128.3 75 82.7
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 7.2e-28 127.5 127 62.2
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 1.4e-26 123.2 123 56.9
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 2.6e-25 119.0 121 59.5
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 3.3e-25 118.6 122 58.2
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 7.5e-25 117.5 69 87.0
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 8.2e-24 114.0 125 54.4
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 1.1e-23 113.6 109 61.5
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 4.5e-22 108.2 127 59.1
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.9e-21 105.5 93 62.4
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 3.8e-21 105.1 78 70.5
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.1e-20 103.6 91 69.2
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.5e-20 102.4 93 65.6
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.6e-19 99.8 76 68.4
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 8.0e-19 97.4 124 52.4
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 3.0e-18 95.5 96 51.0
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.0e-18 95.5 72 69.4
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 7.5e-17 90.9 69 69.6
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 6.3e-16 87.8 46 95.7
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 8.3e-16 87.4 112 47.3
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 5.5e-12 74.7 44 68.2
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 5.9e-06 54.7 69 49.3


User provided reference genes

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