Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 0.0e+00 1847.8 970 100.0
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 0.0e+00 1095.9 986 61.5
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 2.8e-308 1062.0 983 60.3
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.0e-299 1033.5 968 59.9
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 6.0e-279 964.5 977 55.6
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 3.2e-272 942.2 999 54.5
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 2.3e-262 909.4 993 53.3
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 1.0e-254 884.0 963 52.8
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.5e-253 880.2 1008 50.8
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.4e-251 872.8 998 50.2
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 5.8e-250 868.2 1014 51.3
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 5.8e-250 868.2 983 50.9
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 2.7e-247 859.4 995 50.4
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 2.8e-244 849.4 1047 46.7
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.6e-242 842.8 998 49.4
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 3.4e-242 842.4 994 50.9
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 4.5e-242 842.0 979 51.0
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 5.8e-242 841.6 995 49.5
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 7.6e-242 841.3 1000 49.3
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 7.6e-242 841.3 1005 49.3
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.9e-240 836.6 1043 48.0
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.1e-239 833.2 974 50.3
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 3.5e-239 832.4 1039 48.2
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 3.0e-238 829.3 983 50.2
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 5.1e-238 828.6 988 50.4
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 1.5e-237 827.0 933 51.2
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 2.5e-237 826.2 989 49.9
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 4.3e-237 825.5 991 50.2
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 5.7e-237 825.1 1034 48.5
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 1.6e-236 823.5 977 49.4
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 2.2e-236 823.2 992 50.2
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 3.7e-236 822.4 995 50.5
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 3.1e-235 819.3 1019 48.6
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 2.6e-234 816.2 1001 49.8
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 8.5e-233 811.2 995 48.4
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 1.4e-232 810.4 1004 49.2
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 2.5e-232 809.7 996 48.0
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.5e-232 809.7 988 49.0
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 2.5e-232 809.7 1018 46.9
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 5.5e-232 808.5 994 48.0
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.6e-231 807.0 980 50.1
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 2.7e-231 806.2 1003 47.3
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 4.6e-231 805.4 965 49.8
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 4.6e-231 805.4 1107 47.2
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 7.9e-231 804.7 989 48.9
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.4e-230 803.9 719 57.3
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 3.9e-230 802.4 994 48.7
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 8.8e-230 801.2 1155 44.4
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 2.5e-229 799.7 987 49.0
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 3.3e-229 799.3 980 49.5
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 7.4e-229 798.1 984 47.9
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 3.7e-228 795.8 984 49.0
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 4.8e-228 795.4 990 48.7
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 6.9e-227 791.6 1009 46.8
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 4.5e-226 788.9 996 47.2
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 5.9e-226 788.5 1032 48.3
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 7.7e-226 788.1 1022 46.9
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.0e-225 787.7 993 46.7
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.7e-225 786.9 980 47.7
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 2.9e-225 786.2 996 49.2
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 4.2e-224 782.3 988 47.4
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 9.4e-224 781.2 992 48.6
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.7e-223 778.9 992 48.5
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 2.6e-221 773.1 1005 48.0
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 7.0e-219 765.0 979 47.6
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 2.6e-218 763.1 988 46.7
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 2.6e-218 763.1 1111 43.5
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.9e-218 761.9 1002 47.0
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.7e-217 760.4 1010 45.9
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 2.2e-217 760.0 1032 46.5
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 3.8e-217 759.2 1030 46.0
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 1.2e-215 754.2 989 46.0
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.6e-215 753.8 748 53.3
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 3.0e-214 749.6 984 47.4
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.1e-213 747.7 684 56.3
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 3.3e-213 746.1 1011 47.1
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 4.4e-213 745.7 960 47.4
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 4.4e-213 745.7 1006 46.7
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 9.7e-213 744.6 984 46.2
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 9.7e-213 744.6 998 45.9
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 2.2e-212 743.4 935 49.9
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 2.8e-212 743.0 991 45.9
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 9.1e-211 738.0 978 46.6
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.2e-210 737.6 990 45.8
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 3.5e-210 736.1 978 47.2
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 5.9e-210 735.3 985 45.6
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 2.9e-209 733.0 987 46.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 2.9e-209 733.0 714 54.5
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 1.2e-207 727.6 667 57.4
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 1.6e-207 727.2 715 54.3
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.0e-206 724.5 967 45.7
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 2.0e-205 720.3 672 57.0
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 5.7e-205 718.8 989 44.8
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 7.5e-205 718.4 724 53.6
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.2e-204 716.8 990 43.9
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 6.3e-204 715.3 999 44.1
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 9.1e-203 711.4 981 45.0
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.6e-202 710.7 710 54.1
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 2.0e-202 710.3 697 54.8
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 5.0e-201 705.7 724 53.2
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 5.5e-200 702.2 665 55.5
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 2.7e-199 699.9 726 52.5
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 1.4e-198 697.6 1005 43.7
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 5.2e-198 695.7 672 55.2
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 6.3e-196 688.7 679 53.9
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 8.3e-196 688.3 972 46.4
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 4.1e-195 686.0 740 52.4
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 1.9e-192 677.2 702 52.3
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 2.5e-192 676.8 730 51.4
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 6.4e-188 662.1 740 54.3
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 8.9e-182 641.7 982 42.5
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.2e-181 641.3 739 48.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 2.9e-180 636.7 725 47.4
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 1.9e-176 624.0 806 44.0
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 2.9e-172 610.1 1002 40.4
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 4.1e-171 606.3 1041 39.6
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.6e-154 551.2 724 43.0
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 2.8e-151 540.4 775 41.5
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 9.9e-149 531.9 787 42.9
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.1e-118 432.2 681 40.5
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 8.8e-105 386.0 599 35.4
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 2.9e-100 370.9 491 39.9
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.1e-99 369.0 760 34.1
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.7e-95 355.1 307 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 3.6e-90 337.4 468 41.0
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 8.7e-36 156.8 115 62.6
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 4.0e-33 147.9 155 50.3
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 2.2e-31 142.1 394 28.9
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 2.1e-26 125.6 146 49.3
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 3.3e-19 101.7 185 35.7
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.4e-14 86.3 346 31.2
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.6e-13 82.8 83 56.6
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.6e-10 72.8 135 36.3
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 2.2e-10 72.4 135 36.3
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 6.9e-09 67.4 102 41.2
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 3.4e-08 65.1 102 41.2
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 3.2e-06 58.5 101 38.6


User provided reference genes

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