Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03036 Selenicereus undatus HOM05D005134 ORTHO05D006548 6.8e-173 610.5 299 100.0
AUR62028240 Chenopodium quinoa HOM05D005134 ORTHO05D006548 3.2e-106 389.0 299 65.9
AUR62002121 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.0e-104 384.0 299 65.2
EL10Ac3g05020 Beta vulgaris HOM05D005134 ORTHO05D006548 1.5e-103 380.2 288 67.0
Ah.04g155980 Amaranthus hybridus HOM05D005134 ORTHO05D006548 7.6e-100 367.9 290 64.8
Nitab4.5_0011884g0010 Nicotiana tabacum HOM05D005134 ORTHO05D006548 7.4e-95 351.3 274 62.4
TAR365G0228 Trochodendron aralioides HOM05D005134 ORTHO05D006548 9.7e-95 350.9 279 62.7
Nn1g02742 Nelumbo nucifera HOM05D005134 ORTHO05D006548 3.7e-94 349.0 302 60.3
TWI63G1834 Tripterygium wilfordii HOM05D005134 ORTHO05D006548 3.7e-94 349.0 266 63.2
Cpa.g.sc162.33 Carica papaya HOM05D005134 ORTHO05D006548 4.8e-94 348.6 299 59.5
THA.LOC104807079 Tarenaya hassleriana HOM05D005134 ORTHO05D006548 4.8e-94 348.6 294 59.2
Actinidia04451 Actinidia chinensis HOM05D005134 ORTHO05D006548 6.3e-94 348.2 288 60.4
Aqoxy5G00231 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 1.1e-93 347.4 249 68.7
Nitab4.5_0000044g0220 Nicotiana tabacum HOM05D005134 ORTHO05D006548 2.4e-93 346.3 273 61.9
Rhsim04G0183700 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.0e-92 343.2 289 60.2
TAR636G3303 Trochodendron aralioides HOM05D005134 ORTHO05D006548 2.0e-92 343.2 280 62.1
Gorai.013G187000 Gossypium raimondii HOM05D005134 ORTHO05D006548 3.4e-92 342.4 249 65.9
MBI18_g13184_MAGBIO Magnolia biondii HOM05D005134 ORTHO05D006548 7.7e-92 341.3 254 65.4
Sc09g0004160 Simmondsia chinensis HOM05D005134 ORTHO05D006548 1.0e-91 340.9 294 58.5
Sopen09g032960 Solanum pennellii HOM05D005134 ORTHO05D006548 1.3e-91 340.5 266 63.5
Thecc.05G272900 Theobroma cacao HOM05D005134 ORTHO05D006548 1.3e-91 340.5 249 67.1
Gohir.A13G168200 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.7e-91 340.1 249 66.3
Gohir.D13G173500 Gossypium hirsutum HOM05D005134 ORTHO05D006548 1.7e-91 340.1 249 65.5
Manes.09G148800 Manihot esculenta HOM05D005134 ORTHO05D006548 2.9e-91 339.3 252 65.5
Hma1.2p1_1006F.1_g247010 Hydrangea macrophylla HOM05D005134 ORTHO05D006548 5.0e-91 338.6 272 61.8
PGR004G2085 Punica granatum HOM05D005134 ORTHO05D006548 5.0e-91 338.6 296 58.8
Peaxi162Scf00409g00421 Petunia axillaris HOM05D005134 ORTHO05D006548 8.5e-91 337.8 259 63.7
Potri.013G045800 Populus trichocarpa HOM05D005134 ORTHO05D006548 8.5e-91 337.8 249 64.7
Sabra13G0042100 Salix brachista HOM05D005134 ORTHO05D006548 8.5e-91 337.8 245 65.7
RcHm_v2.0_Chr3g0449951 Rosa chinensis HOM05D005134 ORTHO05D006548 1.1e-90 337.4 298 55.7
CAN.G793.56 Capsicum annuum HOM05D005134 ORTHO05D006548 1.4e-90 337.0 274 62.4
Aa31LG2G12350 Aethionema arabicum HOM05D005134 ORTHO05D006548 5.5e-90 335.1 278 60.1
CiPaw.08G117800 Carya illinoinensis HOM05D005134 ORTHO05D006548 7.2e-90 334.7 249 65.9
Phvul.L001688 Phaseolus vulgaris HOM05D005134 ORTHO05D006548 7.2e-90 334.7 275 59.3
QL03p031652 Quercus lobata HOM05D005134 ORTHO05D006548 7.2e-90 334.7 249 65.5
QL09p031144 Quercus lobata HOM05D005134 ORTHO05D006548 7.2e-90 334.7 249 65.5
PGSC0003DMG400017174 Solanum tuberosum HOM05D005134 ORTHO05D006548 7.2e-90 334.7 266 62.8
FAN05G3609 Fragaria x ananassa HOM05D005134 ORTHO05D006548 2.1e-89 333.2 298 55.7
Lj3A700T11 Lonicera japonica HOM05D005134 ORTHO05D006548 2.1e-89 333.2 292 57.2
Ciclev10001967m.g Citrus clementina HOM05D005134 ORTHO05D006548 3.6e-89 332.4 296 55.7
Migut.N00267 Erythranthe guttata HOM05D005134 ORTHO05D006548 3.6e-89 332.4 281 60.9
FvH4_6g02180 Fragaria vesca HOM05D005134 ORTHO05D006548 6.1e-89 331.6 298 55.7
Prupe.6G348800 Prunus persica HOM05D005134 ORTHO05D006548 6.1e-89 331.6 250 64.4
MSTRG.21911 Avicennia marina HOM05D005134 ORTHO05D006548 1.0e-88 330.9 274 60.9
Duzib177G0085 Durio zibethinus HOM05D005134 ORTHO05D006548 1.0e-88 330.9 271 60.1
MD12G1246100 Malus domestica HOM05D005134 ORTHO05D006548 1.0e-88 330.9 249 63.9
CDE02G0996 Ceratophyllum demersum HOM05D005134 ORTHO05D006548 1.8e-88 330.1 298 54.4
Haze_04438 Corylus avellana HOM05D005134 ORTHO05D006548 2.3e-88 329.7 273 61.9
CANSAT54G0719 Cannabis sativa HOM05D005134 ORTHO05D006548 5.1e-88 328.6 290 55.9
Dinv14615 Davidia involucrata HOM05D005134 ORTHO05D006548 5.1e-88 328.6 250 63.6
Eucgr.H04250 Eucalyptus grandis HOM05D005134 ORTHO05D006548 1.9e-87 326.6 249 63.9
FAN14G0587 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.9e-87 326.6 298 55.0
Cc03_g05430 Coffea canephora HOM05D005134 ORTHO05D006548 2.5e-87 326.2 271 61.3
Glyma.10G166800 Glycine max HOM05D005134 ORTHO05D006548 2.5e-87 326.2 254 61.8
Potri.019G017900 Populus trichocarpa HOM05D005134 ORTHO05D006548 2.5e-87 326.2 244 64.3
VMungo0720G0573 Vigna mungo HOM05D005134 ORTHO05D006548 3.3e-87 325.9 261 60.2
Eucgr.H04279 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.3e-87 325.5 249 63.9
PSO170G6910 Papaver somniferum HOM05D005134 ORTHO05D006548 4.3e-87 325.5 240 64.6
Solyc09g090050.4 Solanum lycopersicum HOM05D005134 ORTHO05D006548 4.3e-87 325.5 233 66.1
SalBow3G1367 Salvia bowleyana HOM05D005134 ORTHO05D006548 5.7e-87 325.1 273 60.4
GSVIVG01036192001 Vitis vinifera HOM05D005134 ORTHO05D006548 7.4e-87 324.7 250 62.8
ATR0730G220 Amborella trichopoda HOM05D005134 ORTHO05D006548 1.3e-86 323.9 288 56.9
FAN05G5817 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.7e-86 323.6 298 54.4
Oeu028977.1 Olea europaea HOM05D005134 ORTHO05D006548 2.8e-86 322.8 248 62.9
CsaV3_2G003750 Cucumis sativus L. HOM05D005134 ORTHO05D006548 3.7e-86 322.4 256 60.5
GSVIVG01027798001 Vitis vinifera HOM05D005134 ORTHO05D006548 3.7e-86 322.4 238 66.4
MELO3C004420.2 Cucumis melo HOM05D005134 ORTHO05D006548 4.8e-86 322.0 256 60.9
CSS0005455 Camellia sinensis var. sinensis HOM05D005134 ORTHO05D006548 6.3e-86 321.6 250 62.8
CARHR110960 Cardamine hirsuta HOM05D005134 ORTHO05D006548 8.2e-86 321.2 270 57.4
Lj5g0005697 Lotus japonicus HOM05D005134 ORTHO05D006548 8.2e-86 321.2 247 61.5
HPP92_025481 Vanilla planifolia HOM05D005134 ORTHO05D006548 9.1e-85 317.8 245 62.9
Carub.0003s3480 Capsella rubella HOM05D005134 ORTHO05D006548 1.2e-84 317.4 296 55.7
TPR.G32267 Trifolium pratense HOM05D005134 ORTHO05D006548 1.2e-84 317.4 259 58.7
Medtr1g079925 Medicago truncatula HOM05D005134 ORTHO05D006548 1.5e-84 317.0 259 58.7
Lalb_Chr02g0149171 Lupinus albus HOM05D005134 ORTHO05D006548 2.0e-84 316.6 298 52.7
PSO173G0035 Papaver somniferum HOM05D005134 ORTHO05D006548 2.6e-84 316.2 240 63.8
AL3G53380 Arabidopsis lyrata HOM05D005134 ORTHO05D006548 4.5e-84 315.5 282 56.4
SpUn0001_1010 Schrenkiella parvula HOM05D005134 ORTHO05D006548 4.5e-84 315.5 286 55.9
Sed0016660 Sechium edule HOM05D005134 ORTHO05D006548 4.5e-84 315.5 255 60.8
Glyma.20G222300 Glycine max HOM05D005134 ORTHO05D006548 1.0e-83 314.3 254 60.6
Thhalv10027851m.g Eutrema salsugineum HOM05D005134 ORTHO05D006548 1.3e-83 313.9 276 57.2
arahy.Tifrunner.gnm1.ann1.JQR6X4 Arachis hypogaea HOM05D005134 ORTHO05D006548 1.7e-83 313.5 283 56.2
arahy.Tifrunner.gnm1.ann1.MCCA8X Arachis hypogaea HOM05D005134 ORTHO05D006548 2.9e-83 312.8 283 56.2
HPP92_015212 Vanilla planifolia HOM05D005134 ORTHO05D006548 2.9e-83 312.8 242 63.2
HanXRQChr03g0091791 Helianthus annuus HOM05D005134 ORTHO05D006548 3.8e-83 312.4 255 57.6
Manes.08G138000 Manihot esculenta HOM05D005134 ORTHO05D006548 6.5e-83 311.6 253 60.9
Atru.chr6.1561 Acer truncatum HOM05D005134 ORTHO05D006548 8.5e-83 311.2 252 59.5
COL.COLO4_15462 Corchorus olitorius HOM05D005134 ORTHO05D006548 8.5e-83 311.2 235 63.8
Aqoxy2G03635 Aquilegia oxysepala HOM05D005134 ORTHO05D006548 5.5e-82 308.5 299 54.8
AT2G20410 Arabidopsis thaliana HOM05D005134 ORTHO05D006548 1.6e-81 307.0 292 54.1
ECA240G2747 Erigeron canadensis HOM05D005134 ORTHO05D006548 2.1e-81 306.6 255 57.6
BcaB04g20137 Brassica carinata HOM05D005134 ORTHO05D006548 3.6e-81 305.8 274 56.2
Sed0011924 Sechium edule HOM05D005134 ORTHO05D006548 4.7e-81 305.4 251 59.8
Lsat_1_v5_gn_3_118860 Lactuca sativa HOM05D005134 ORTHO05D006548 7.9e-81 304.7 244 58.6
BcaC09g49624 Brassica carinata HOM05D005134 ORTHO05D006548 1.0e-80 304.3 291 54.0
C01p34370 Brassica napus HOM05D005134 ORTHO05D006548 2.3e-80 303.1 291 53.6
BolC1t03407H Brassica oleracea HOM05D005134 ORTHO05D006548 2.3e-80 303.1 291 53.6
SHI23170 Sapria himalayana HOM05D005134 ORTHO05D006548 3.9e-80 302.4 245 59.6
ClCG02G016990 Citrullus lanatus HOM05D005134 ORTHO05D006548 6.7e-80 301.6 274 55.1
SEGI_05528 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.1e-79 300.8 246 58.1
FAN02G2775 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.4e-79 298.1 365 44.9
Zm00001eb210280 Zea mays HOM05D005134 ORTHO05D006548 3.7e-78 295.8 262 57.6
unitig_0.g910 Utricularia gibba HOM05D005134 ORTHO05D006548 6.3e-78 295.0 246 58.5
vmacro08495 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 7.7e-76 288.1 427 39.8
vmacro02444 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 1.1e-74 284.3 249 56.2
EL10Ac4g09067 Beta vulgaris HOM05D005134 ORTHO05D006548 3.2e-74 282.7 253 56.5
Eucgr.H04252 Eucalyptus grandis HOM05D005134 ORTHO05D006548 3.6e-73 279.3 249 58.2
Hund06912 Selenicereus undatus HOM05D005134 ORTHO05D006548 3.0e-72 276.2 291 50.5
Actinidia34743 Actinidia chinensis HOM05D005134 ORTHO05D006548 3.1e-69 266.2 296 48.6
GSVIVG01027796001 Vitis vinifera HOM05D005134 ORTHO05D006548 7.2e-66 255.0 234 56.8
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 4.7e-65 252.3 209 59.3
Mapoly0025s0138 Marchantia polymorpha HOM05D005134 ORTHO05D006548 2.3e-64 250.0 238 51.7
FAN09G4497 Fragaria x ananassa HOM05D005134 ORTHO05D006548 3.0e-64 249.6 239 53.1
MD04G1229000 Malus domestica HOM05D005134 ORTHO05D006548 2.2e-62 243.4 280 48.6
Ca_10010_v3 Cicer arietinum L. HOM05D005134 ORTHO05D006548 7.0e-61 238.4 221 54.3
SMO367G0112 Selaginella moellendorffii HOM05D005134 ORTHO05D006548 2.7e-60 236.5 187 58.3
Eucgr.H04289 Eucalyptus grandis HOM05D005134 ORTHO05D006548 7.7e-60 235.0 252 50.0
Ah.06g191930 Amaranthus hybridus HOM05D005134 ORTHO05D006548 3.8e-59 232.6 253 50.2
AUR62004857 Chenopodium quinoa HOM05D005134 ORTHO05D006548 1.1e-58 231.1 278 46.8
Rhsim13G0009400 Rhododendron simsii HOM05D005134 ORTHO05D006548 2.0e-55 220.3 208 54.3
SGA_v2.0_scaffold308G48086 Striga asiatica HOM05D005134 ORTHO05D006548 9.8e-55 218.0 152 62.5
Dinv29871 Davidia involucrata HOM05D005134 ORTHO05D006548 6.3e-54 215.3 164 67.1
HPP92_015224 Vanilla planifolia HOM05D005134 ORTHO05D006548 7.0e-53 211.8 258 46.1
Actinidia01853 Actinidia chinensis HOM05D005134 ORTHO05D006548 5.0e-51 205.7 287 42.2
AUR62040940 Chenopodium quinoa HOM05D005134 ORTHO05D006548 2.8e-49 199.9 197 50.3
Os03g0860000 Oryza sativa ssp. japonica HOM05D005134 ORTHO05D006548 4.7e-49 199.1 159 57.2
Eucgr.H04247 Eucalyptus grandis HOM05D005134 ORTHO05D006548 8.9e-48 194.9 157 58.6
DCAR_002321 Daucus carota HOM05D005134 ORTHO05D006548 1.2e-47 194.5 213 48.8
Actinidia38945 Actinidia chinensis HOM05D005134 ORTHO05D006548 4.1e-45 186.0 166 54.2
Psat6g143200 Pisum sativum HOM05D005134 ORTHO05D006548 1.5e-42 177.6 140 60.7
SEGI_11048 Sequoiadendron giganteum HOM05D005134 ORTHO05D006548 1.2e-41 174.5 149 56.4
AagrBONN_evm.TU.Sc2ySwM_344.1164 Anthoceros agrestis HOM05D005134 ORTHO05D006548 3.7e-38 162.9 157 48.4
Cre16.g655100 Chlamydomonas reinhardtii HOM05D005134 ORTHO05D006548 7.5e-31 138.7 229 33.6
Manes.15G040000 Manihot esculenta HOM05D005134 ORTHO05D006548 8.3e-30 135.2 96 64.6
vmacro02443 Vaccinium macrocarpon HOM05D005134 ORTHO05D006548 8.6e-27 125.2 129 48.8
Eucgr.H04286 Eucalyptus grandis HOM05D005134 ORTHO05D006548 4.3e-18 96.3 162 37.7
Duzib177G1154 Durio zibethinus HOM05D005134 ORTHO05D013855 8.4e-14 82.0 83 55.4
FAN14G5434 Fragaria x ananassa HOM05D005134 ORTHO05D006548 7.1e-13 79.0 114 43.9
FAN06G2241 Fragaria x ananassa HOM05D005134 ORTHO05D006548 1.4e-08 64.7 32 81.2
RcHm_v2.0_Chr6g0274061 Rosa chinensis HOM05D005134 ORTHO05D006548 5.8e-07 59.3 54 59.3
ATR0598G211 Amborella trichopoda HOM05D005134 ORTHO05D067863 9.9e-07 58.5 70 47.1


User provided reference genes

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