Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 9.1e-208 728.0 938 100.0
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 1.3e-57 229.2 199 62.8
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 9.2e-51 206.5 195 55.4
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 1.6e-50 205.7 177 58.2
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 2.5e-48 198.4 175 57.7
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 3.3e-48 198.0 175 57.7
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 9.5e-48 196.4 189 56.6
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 2.4e-46 191.8 199 52.8
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 1.2e-45 189.5 173 54.9
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.2e-45 189.5 202 50.0
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 2.0e-45 188.7 170 58.2
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 3.4e-45 188.0 176 55.1
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 3.4e-45 188.0 198 51.0
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 5.8e-45 187.2 204 48.5
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 5.8e-45 187.2 175 54.3
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 7.6e-45 186.8 198 51.5
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.9e-44 184.9 174 52.9
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 4.9e-44 184.1 196 48.5
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 4.9e-44 184.1 177 54.2
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 8.4e-44 183.3 204 47.5
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.4e-43 182.6 204 47.1
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 2.4e-43 181.8 198 49.5
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 3.2e-43 181.4 175 53.1
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 1.2e-42 179.5 194 51.0
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 1.6e-42 179.1 175 54.3
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 2.7e-42 178.3 177 49.7
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 2.7e-42 178.3 175 52.6
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 2.3e-41 175.3 175 50.9
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 3.0e-41 174.9 175 53.7
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 3.9e-41 174.5 199 50.3
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 1.5e-40 172.6 176 52.8
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 1.5e-40 172.6 210 48.6
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 2.5e-40 171.8 199 49.7
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 3.3e-40 171.4 167 53.9
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 5.6e-40 170.6 210 47.1
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 7.3e-40 170.2 195 51.3
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 1.2e-39 169.5 175 49.1
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 3.6e-39 167.9 170 50.6
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 3.6e-39 167.9 176 53.4
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 4.7e-39 167.5 163 54.0
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 8.1e-39 166.8 205 43.4
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 8.1e-39 166.8 171 51.5
vmacro18279 Vaccinium macrocarpon HOM05D003210 ORTHO05D008377 1.1e-38 166.4 195 49.2
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 3.1e-38 164.9 179 52.5
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 5.3e-38 164.1 177 47.5
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 1.5e-37 162.5 200 47.5
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.6e-37 161.8 179 51.4
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 3.4e-37 161.4 175 48.6
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.7e-36 159.1 202 46.0
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 1.7e-36 159.1 175 48.0
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 2.2e-36 158.7 222 43.2
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 2.9e-36 158.3 200 46.0
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.8e-36 157.9 173 50.3
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.1e-35 156.4 198 43.9
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 1.1e-35 156.4 221 45.7
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 1.4e-35 156.0 176 47.7
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 2.4e-35 155.2 175 44.0
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 2.4e-35 155.2 179 46.4
Sabra06G0098600 Salix brachista HOM05D003210 ORTHO05D000001 4.2e-35 154.5 225 43.6
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 4.6e-34 151.0 219 39.7
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.8e-34 150.2 177 49.7
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 1.0e-33 149.8 188 44.1
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 1.0e-33 149.8 163 50.9
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 1.3e-33 149.4 201 43.3
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 3.0e-33 148.3 171 46.8
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 1.5e-32 146.0 171 46.2
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 1.5e-32 146.0 190 44.2
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 1.5e-32 146.0 186 43.0
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 2.5e-32 145.2 158 47.5
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 2.5e-32 145.2 188 43.6
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 3.3e-32 144.8 219 39.3
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 4.3e-32 144.4 171 45.6
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 4.3e-32 144.4 171 45.6
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 4.3e-32 144.4 171 45.6
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 7.3e-32 143.7 209 40.2
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 2.8e-31 141.7 172 43.6
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 8.1e-31 140.2 185 43.8
arahy.Tifrunner.gnm1.ann1.PFI7NN Arachis hypogaea HOM05D003210 ORTHO05D000001 1.4e-30 139.4 180 45.6
arahy.Tifrunner.gnm1.ann1.SQ2KUV Arachis hypogaea HOM05D003210 ORTHO05D000001 1.4e-30 139.4 180 45.6
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 1.4e-30 139.4 160 46.2
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 1.4e-30 139.4 158 46.2
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.8e-30 139.0 160 46.2
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 2.4e-30 138.7 170 42.4
Aa31LG1G16470 Aethionema arabicum HOM05D003210 ORTHO05D000001 1.2e-29 136.3 184 42.9
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 4.5e-29 134.4 194 41.2
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.3e-28 132.9 158 45.6
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 6.4e-28 130.6 206 41.3
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.4e-27 129.4 161 44.1
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.4e-27 127.5 161 43.5
FAN26G0660 Fragaria x ananassa HOM05D000020 ORTHO05D000001 7.1e-27 127.1 161 43.5
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 3.0e-25 121.7 173 39.3
PGSC0003DMG400012917 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.5e-24 118.6 173 41.6
ATR0665G178 Amborella trichopoda HOM05D003210 ORTHO05D000001 3.7e-23 114.8 163 38.7
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 1.2e-21 109.8 157 39.5
Zm00001eb118600 Zea mays HOM05D003210 ORTHO05D000001 4.5e-21 107.8 195 32.8
Os06g0690900 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 5.8e-21 107.5 190 33.7
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 7.6e-21 107.1 139 42.4
Zm00001eb164240 Zea mays HOM05D003210 ORTHO05D000001 1.3e-20 106.3 175 34.9
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 4.9e-20 104.4 88 67.0
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 5.5e-19 100.9 212 33.5
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 2.7e-18 98.6 175 34.3
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 7.9e-18 97.1 173 35.8
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.8e-17 95.9 196 32.7
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 3.9e-17 94.7 189 33.3
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 6.7e-17 94.0 88 61.4
Rhsim05G0168300 Rhododendron simsii HOM05D003210 ORTHO05D000001 6.7e-17 94.0 88 52.3
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 1.1e-16 93.2 212 32.1
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 1.9e-16 92.4 175 34.3
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 1.6e-15 89.4 187 32.6
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 2.1e-15 89.0 187 31.6
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 2.1e-15 89.0 187 31.6
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 2.8e-15 88.6 161 32.9
HPP92_017252 Vanilla planifolia HOM05D003210 ORTHO05D000001 3.7e-15 88.2 195 29.2
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 6.2e-15 87.4 175 32.6
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 8.2e-15 87.0 160 33.1
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 1.1e-14 86.7 176 30.1
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 2.4e-14 85.5 177 33.3
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.4e-14 85.5 163 33.1
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 3.1e-14 85.1 212 30.2
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 4.0e-14 84.7 159 34.0
Zm00001eb118490 Zea mays HOM05D003210 ORTHO05D000001 9.0e-14 83.6 139 35.3
GSVIVG01030055001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.2e-13 83.2 158 32.3
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.5e-13 82.8 163 31.3
SEGI_31076 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 2.6e-13 82.0 161 32.9
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 3.4e-13 81.6 161 31.1
AUR62015034 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.4e-13 81.6 185 34.1
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 5.8e-13 80.9 139 36.0
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 7.6e-13 80.5 194 30.4
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 2.2e-12 79.0 167 31.7
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 6.5e-12 77.4 175 30.9
CAN.G1397.6 Capsicum annuum HOM05D003210 ORTHO05D000001 8.4e-12 77.0 193 28.5
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 8.4e-12 77.0 160 30.0
AL7G34260 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.1e-11 76.6 161 34.2
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 1.4e-11 76.3 155 31.6
MBI19_g25583_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 1.9e-11 75.9 148 30.4
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 2.5e-11 75.5 137 35.0
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.2e-11 75.1 184 33.2
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 4.2e-11 74.7 187 28.9
RcHm_v2.0_Chr2g0156641 Rosa chinensis HOM05D003210 ORTHO05D000001 5.5e-11 74.3 161 26.1
TWI18G1117 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 5.5e-11 74.3 162 28.4
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 1.2e-10 73.2 198 25.8
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 1.2e-10 73.2 164 29.3
HPP92_001177 Vanilla planifolia HOM05D003210 ORTHO05D000001 2.1e-10 72.4 176 27.8
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 2.7e-10 72.0 161 24.8
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 4.6e-10 71.2 161 24.8
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 4.6e-10 71.2 165 26.7
AL2G37540 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 1.3e-09 69.7 67 49.3
Solyc07g047820.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 1.3e-09 69.7 191 26.2
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.8e-09 69.3 180 27.2
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 1.8e-09 69.3 191 26.2
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 6.7e-09 67.4 155 27.7
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 2.5e-08 65.5 191 24.1
SalBow3G1735 Salvia bowleyana HOM05D003210 ORTHO05D000001 5.7e-08 64.3 45 64.4
Oeu040467.2 Olea europaea HOM05D003210 ORTHO05D000001 7.4e-08 63.9 159 27.7
Ah.15g091280 Amaranthus hybridus HOM05D003210 ORTHO05D000001 1.6e-07 62.8 126 32.5
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 1.6e-07 62.8 198 26.8
Gorai.004G048700 Gossypium raimondii HOM05D007545 ORTHO05D009579 1.6e-07 62.8 192 28.1
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 2.2e-07 62.4 79 38.0
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 4.8e-07 61.2 160 28.1
BcaC01g02795 Brassica carinata HOM05D003210 ORTHO05D032134 8.2e-07 60.5 153 30.7
Nitab4.5_0002165g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 8.2e-07 60.5 68 47.1
TWI77G0027 Tripterygium wilfordii HOM05D007545 ORTHO05D009579 8.2e-07 60.5 196 25.5
Nitab4.5_0005257g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 1.1e-06 60.1 70 47.1
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 1.1e-06 60.1 172 30.8
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 1.1e-06 60.1 152 27.0
BNapus_Darmor_BZH_scaffold_109p00140 Brassica napus HOM05D008810 ORTHO05D010971 1.4e-06 59.7 172 27.3
COL.COLO4_08492 Corchorus olitorius HOM05D003210 ORTHO05D000001 1.4e-06 59.7 107 34.6
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.4e-06 59.7 93 35.5
Gohir.D08G049200 Gossypium hirsutum HOM05D007545 ORTHO05D009579 1.4e-06 59.7 192 27.6
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.8e-06 59.3 131 28.2
SalBow7G0399 Salvia bowleyana HOM05D003210 ORTHO05D000001 1.8e-06 59.3 155 27.7
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 3.1e-06 58.5 74 36.5
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 5.3e-06 57.8 175 25.1
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 5.3e-06 57.8 191 27.7
Glyma.02G243500 Glycine max HOM05D007545 ORTHO05D009579 9.0e-06 57.0 196 25.5
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 9.0e-06 57.0 185 24.9


User provided reference genes

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