Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.5e-50 201.8 105 100.0
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 1.6e-20 102.8 125 50.4
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.6e-20 102.8 118 54.2
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 3.6e-20 101.7 125 50.4
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 3.6e-20 101.7 125 50.4
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 3.6e-20 101.7 123 50.4
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 3.6e-20 101.7 124 49.2
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 4.7e-20 101.3 125 49.6
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 4.7e-20 101.3 125 49.6
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 8.0e-20 100.5 118 53.4
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 8.0e-20 100.5 125 49.6
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 8.0e-20 100.5 118 52.5
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.0e-19 100.1 115 52.2
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 1.4e-19 99.8 123 49.6
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 1.4e-19 99.8 123 49.6
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 1.4e-19 99.8 127 50.4
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 1.4e-19 99.8 123 50.4
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 1.8e-19 99.4 123 50.4
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 2.3e-19 99.0 119 50.4
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 2.3e-19 99.0 119 52.1
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.3e-19 99.0 125 49.6
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 2.3e-19 99.0 125 48.8
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 3.0e-19 98.6 122 50.8
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 3.0e-19 98.6 123 49.6
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 4.0e-19 98.2 120 52.5
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 4.0e-19 98.2 123 50.4
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 4.0e-19 98.2 123 50.4
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 4.0e-19 98.2 123 50.4
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 4.0e-19 98.2 123 49.6
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 4.0e-19 98.2 123 50.4
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 5.2e-19 97.8 118 51.7
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 5.2e-19 97.8 118 52.5
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 6.8e-19 97.4 123 48.8
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 8.8e-19 97.1 110 52.7
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 8.8e-19 97.1 123 48.0
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 8.8e-19 97.1 123 48.0
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 8.8e-19 97.1 123 48.0
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 8.8e-19 97.1 123 48.0
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.2e-18 96.7 123 48.8
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 1.2e-18 96.7 123 50.4
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 1.2e-18 96.7 118 50.8
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 1.5e-18 96.3 118 49.2
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.5e-18 96.3 123 48.0
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.5e-18 96.3 123 49.6
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.5e-18 96.3 118 51.7
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.0e-18 95.9 118 49.2
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 2.6e-18 95.5 123 48.0
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 2.6e-18 95.5 123 48.8
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 2.6e-18 95.5 123 48.8
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 2.6e-18 95.5 123 48.0
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.6e-18 95.5 118 49.2
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 2.6e-18 95.5 120 50.0
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 2.6e-18 95.5 123 48.0
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.6e-18 95.5 118 50.0
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 3.4e-18 95.1 123 48.0
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 3.4e-18 95.1 123 48.8
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 3.4e-18 95.1 123 48.8
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 3.4e-18 95.1 123 49.6
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 4.4e-18 94.7 123 48.8
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 4.4e-18 94.7 123 48.0
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 4.4e-18 94.7 119 50.4
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 5.7e-18 94.4 123 48.0
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 5.7e-18 94.4 123 48.0
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 5.7e-18 94.4 118 50.8
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 7.5e-18 94.0 118 50.0
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 7.5e-18 94.0 123 48.0
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 9.8e-18 93.6 118 49.2
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 9.8e-18 93.6 118 49.2
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 9.8e-18 93.6 123 48.8
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 9.8e-18 93.6 123 48.8
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 1.3e-17 93.2 123 48.0
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 1.3e-17 93.2 123 47.2
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 1.3e-17 93.2 118 50.0
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 1.3e-17 93.2 123 48.0
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 1.3e-17 93.2 118 48.3
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 1.3e-17 93.2 118 48.3
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 1.3e-17 93.2 118 48.3
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 1.3e-17 93.2 119 49.6
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 1.3e-17 93.2 118 50.8
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 1.7e-17 92.8 123 48.0
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 1.7e-17 92.8 119 48.7
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 1.7e-17 92.8 123 48.0
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.7e-17 92.8 118 48.3
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 2.2e-17 92.4 119 49.6
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.2e-17 92.4 123 48.8
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 2.2e-17 92.4 118 47.5
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.8e-17 92.0 118 50.0
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 2.8e-17 92.0 123 47.2
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 2.8e-17 92.0 123 47.2
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 2.8e-17 92.0 118 50.0
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 2.8e-17 92.0 123 47.2
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 4.8e-17 91.3 118 48.3
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 4.8e-17 91.3 118 48.3
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 6.3e-17 90.9 118 47.5
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 6.3e-17 90.9 119 48.7
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 6.3e-17 90.9 118 49.2
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 6.3e-17 90.9 123 46.3
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 8.3e-17 90.5 123 46.3
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 8.3e-17 90.5 125 47.2
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 8.3e-17 90.5 118 47.5
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 8.3e-17 90.5 118 48.3
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 8.3e-17 90.5 123 47.2
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 1.1e-16 90.1 123 46.3
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 1.1e-16 90.1 123 45.5
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 1.1e-16 90.1 150 41.3
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 1.1e-16 90.1 123 47.2
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 1.1e-16 90.1 123 46.3
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 1.4e-16 89.7 118 46.6
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 1.8e-16 89.4 123 45.5
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 1.8e-16 89.4 118 46.6
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 1.8e-16 89.4 123 47.2
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.8e-16 89.4 123 47.2
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 2.4e-16 89.0 123 43.9
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 2.4e-16 89.0 118 47.5
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 3.1e-16 88.6 123 45.5
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 3.1e-16 88.6 118 46.6
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 4.1e-16 88.2 123 47.2
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 5.4e-16 87.8 118 46.6
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 7.0e-16 87.4 118 48.3
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 7.0e-16 87.4 118 47.5
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.2e-15 86.7 123 46.3
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.7e-15 85.5 123 46.3
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.7e-15 85.5 123 46.3
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.7e-15 85.5 123 42.3
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.7e-15 85.5 118 43.2
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.7e-15 85.5 118 43.2
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 3.5e-15 85.1 123 43.1
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 7.7e-15 84.0 160 40.0
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 3.8e-14 81.6 138 41.3
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 6.5e-14 80.9 118 44.9
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 6.5e-14 80.9 105 47.6
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 8.5e-14 80.5 118 42.4
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 1.1e-13 80.1 118 43.2
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 1.1e-13 80.1 118 43.2
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 1.1e-13 80.1 106 48.1
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 1.5e-13 79.7 123 42.3
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 3.2e-13 78.6 116 46.6
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 3.2e-13 78.6 116 46.6
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 5.5e-13 77.8 125 40.0
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 7.2e-13 77.4 98 49.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.2e-12 76.6 119 42.9
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.7e-12 75.5 120 40.0
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.0e-11 73.6 122 41.8
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 1.8e-11 72.8 105 42.9
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 4.0e-11 71.6 122 43.4
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 8.8e-11 70.5 119 39.5
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.5e-10 69.7 190 32.1
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 9.8e-10 67.0 123 35.0
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 6.3e-09 64.3 126 36.5
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 5.4e-08 61.2 45 66.7
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.0e-06 57.0 114 31.6


User provided reference genes

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