Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 5.4e-167 590.9 293 100.0
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 5.9e-121 438.0 300 75.3
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.2e-119 431.8 303 73.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 8.5e-112 407.5 304 70.4
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 1.4e-106 390.2 307 67.8
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 3.1e-106 389.0 308 67.9
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 5.0e-104 381.7 293 67.6
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 3.6e-102 375.6 308 65.3
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 1.2e-97 360.5 313 62.0
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.0e-96 357.5 303 63.0
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 8.6e-96 354.4 319 60.5
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.1e-95 354.0 299 62.5
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 1.1e-95 354.0 299 62.5
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 4.2e-95 352.1 319 59.6
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 9.5e-95 350.9 294 65.0
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.6e-94 350.1 300 63.7
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 2.1e-94 349.7 303 63.4
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.1e-94 349.7 300 63.7
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 8.0e-94 347.8 253 69.6
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.4e-93 347.1 260 68.1
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 1.4e-93 347.1 293 63.1
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 5.2e-93 345.1 297 62.6
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 8.9e-93 344.4 221 77.4
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 8.9e-93 344.4 277 65.0
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.5e-92 343.6 233 74.2
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.7e-92 341.7 238 73.9
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 7.5e-92 341.3 233 73.0
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.7e-91 340.1 304 62.2
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.2e-91 339.7 301 61.8
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 8.3e-91 337.8 249 69.1
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 8.3e-91 337.8 308 61.4
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.1e-90 337.4 300 62.3
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.1e-90 337.4 233 72.5
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.8e-90 336.7 306 60.1
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 3.1e-90 335.9 301 61.5
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 3.1e-90 335.9 233 73.4
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.2e-89 334.0 311 59.8
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 3.5e-89 332.4 305 58.4
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 4.5e-89 332.0 308 59.7
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 2.9e-88 329.3 234 71.4
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 3.9e-88 328.9 257 68.9
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 5.0e-88 328.6 298 59.7
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.5e-87 327.0 260 65.8
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.5e-87 327.0 302 60.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 5.6e-87 325.1 211 73.5
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 7.3e-87 324.7 248 67.3
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 7.3e-87 324.7 262 67.9
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 9.5e-87 324.3 233 70.8
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.6e-86 323.6 298 58.4
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 6.1e-86 321.6 295 60.0
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 8.0e-86 321.2 241 70.1
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 1.8e-85 320.1 319 57.1
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.3e-85 319.7 301 58.5
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 2.3e-85 319.7 293 59.7
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 3.1e-85 319.3 295 59.7
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 1.2e-84 317.4 237 67.5
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.0e-84 316.6 293 59.4
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 2.6e-84 316.2 308 58.4
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 4.4e-84 315.5 252 65.9
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 5.8e-84 315.1 252 66.3
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.8e-84 315.1 196 77.0
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.1e-82 310.8 233 68.2
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.9e-82 310.1 237 67.9
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 7.0e-82 308.1 302 57.9
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 9.2e-82 307.8 235 63.8
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.6e-81 307.0 300 55.7
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.6e-81 307.0 305 56.4
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 2.7e-81 306.2 213 69.5
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.7e-81 306.2 201 77.6
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 4.6e-81 305.4 301 56.8
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 7.8e-81 304.7 306 57.2
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.0e-80 304.3 238 66.0
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.0e-80 302.8 190 78.4
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.9e-80 302.4 239 65.3
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 3.9e-80 302.4 299 54.8
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 6.6e-80 301.6 297 56.2
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 8.6e-80 301.2 299 56.5
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.5e-79 299.7 235 67.7
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 2.5e-79 299.7 242 64.9
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.5e-79 299.7 242 64.9
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 2.5e-79 299.7 215 68.8
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 7.3e-79 298.1 236 64.4
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.1e-78 296.6 242 64.5
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.8e-78 296.2 256 62.9
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 4.7e-78 295.4 235 64.3
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 4.0e-77 292.4 251 63.3
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 9.8e-76 287.7 242 61.2
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.7e-75 287.0 236 62.3
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 4.9e-75 285.4 240 60.8
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 6.4e-75 285.0 211 66.8
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.1e-74 284.3 247 62.8
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.4e-74 283.9 290 55.2
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 4.1e-74 282.3 212 66.0
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 1.6e-73 280.4 267 60.3
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 3.5e-73 279.3 315 51.4
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 6.6e-72 275.0 205 65.9
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.1e-71 274.2 216 63.9
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 1.6e-70 270.4 218 62.4
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 2.1e-70 270.0 151 82.1
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 6.2e-70 268.5 232 59.1
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 2.2e-67 260.0 234 61.5
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.4e-66 257.3 205 63.4
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.7e-65 253.1 242 56.2
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 9.6e-55 218.0 120 82.5
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 7.6e-52 208.4 237 54.0
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.3e-48 197.6 135 71.9
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 2.5e-47 193.4 225 48.0
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.2e-46 188.7 192 56.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.1e-38 163.7 177 49.7
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.6e-30 137.5 113 69.0
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 4.8e-30 136.0 112 68.8
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.0e-29 132.9 179 46.4
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.2e-28 131.3 148 52.7
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 3.4e-28 129.8 181 39.8
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 1.1e-26 124.8 137 54.7
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 2.1e-25 120.6 183 44.8
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.4e-21 107.1 84 64.3
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 5.9e-20 102.4 67 71.6
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 5.0e-19 99.4 121 50.4
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.6e-17 92.8 132 37.9
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 4.3e-15 86.3 104 54.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.7e-14 84.3 126 38.9
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 7.7e-12 75.5 55 63.6
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 1.2e-09 68.2 141 32.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.6e-09 67.8 151 33.8
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.4e-08 64.7 161 32.3
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 8.8e-08 62.0 132 32.6
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 8.8e-08 62.0 132 32.6
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.1e-07 61.6 138 30.4
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 2.0e-07 60.8 142 34.5
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.6e-07 60.5 123 35.0
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 5.7e-07 59.3 140 30.7
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 5.7e-07 59.3 149 32.9
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 7.4e-07 58.9 137 30.7
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 7.4e-07 58.9 30 86.7
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 9.7e-07 58.5 145 31.0
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 9.7e-07 58.5 38 76.3
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.3e-06 58.2 152 28.3
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.7e-06 57.8 141 33.3
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 2.2e-06 57.4 141 31.9
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 2.2e-06 57.4 63 55.6
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 2.8e-06 57.0 140 32.1
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 4.8e-06 56.2 112 33.9
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.3e-06 55.8 112 32.1
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 8.2e-06 55.5 115 40.0


User provided reference genes

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