Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 0.0e+00 1130.2 569 100.0
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 1.2e-213 746.9 568 67.6
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 5.9e-210 734.6 550 69.8
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.7e-204 715.3 533 70.7
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 7.0e-203 711.1 518 71.4
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 7.0e-203 711.1 556 64.7
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.7e-202 709.1 555 66.7
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 3.8e-201 705.3 562 65.3
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.8e-198 696.4 582 62.5
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 5.2e-198 694.9 492 71.1
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.5e-197 693.3 545 65.7
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 3.4e-197 692.2 569 64.0
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 3.4e-197 692.2 569 62.6
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 7.5e-197 691.0 563 63.9
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 7.5e-197 691.0 561 64.3
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.3e-196 690.3 584 64.2
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 1.6e-194 683.3 560 63.6
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 1.7e-193 679.9 558 64.7
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.7e-193 679.9 562 64.1
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 3.8e-193 678.7 544 65.4
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.1e-192 677.2 561 64.0
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.9e-192 676.4 553 64.2
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 1.9e-192 676.4 547 64.7
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 9.5e-192 674.1 567 62.3
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 2.8e-191 672.5 540 66.1
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 3.6e-191 672.2 559 63.3
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 8.0e-191 671.0 554 63.5
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 1.4e-190 670.2 563 63.4
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 2.3e-190 669.5 559 62.1
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 5.2e-190 668.3 518 68.3
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 5.2e-190 668.3 541 65.6
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 8.9e-190 667.5 550 63.6
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.2e-189 667.2 559 63.3
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 2.6e-189 666.0 541 64.0
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 5.7e-189 664.8 539 63.3
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 9.8e-189 664.1 570 60.5
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 3.7e-188 662.1 500 68.8
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 3.7e-188 662.1 563 63.4
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 4.9e-188 661.8 548 65.0
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.4e-187 660.2 508 66.7
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.8e-187 659.8 551 63.5
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 1.8e-187 659.8 560 62.7
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 2.4e-187 659.4 561 62.4
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.4e-187 659.4 549 63.2
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.4e-187 659.4 552 62.1
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 2.4e-187 659.4 563 62.7
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 3.2e-187 659.1 518 64.5
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 5.4e-187 658.3 552 62.0
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 5.4e-187 658.3 509 66.4
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 7.0e-187 657.9 508 66.7
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 9.2e-187 657.5 561 60.8
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.6e-186 656.8 561 61.3
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 1.6e-186 656.8 552 62.1
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 2.7e-186 656.0 561 61.7
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.7e-186 656.0 508 66.7
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 7.8e-186 654.4 552 61.6
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.9e-185 652.1 557 62.8
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 3.9e-185 652.1 514 64.2
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 5.0e-185 651.7 558 62.2
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 5.0e-185 651.7 574 61.0
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 6.6e-185 651.4 497 65.4
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 8.6e-185 651.0 564 61.2
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 8.6e-185 651.0 507 66.5
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 1.5e-184 650.2 561 60.8
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.5e-184 650.2 506 65.4
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 3.3e-184 649.0 557 62.8
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 3.3e-184 649.0 536 64.7
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 3.3e-184 649.0 550 62.2
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 4.3e-184 648.7 572 60.7
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.3e-184 648.7 557 62.7
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 4.3e-184 648.7 523 64.4
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 4.3e-184 648.7 535 63.9
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 5.6e-184 648.3 549 62.5
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 9.5e-184 647.5 557 61.4
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.6e-183 646.7 560 60.5
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.6e-183 646.7 552 61.4
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 8.0e-183 644.4 555 60.7
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 8.0e-183 644.4 534 64.2
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 2.3e-182 642.9 561 59.7
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.1e-182 642.5 557 61.4
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 4.0e-182 642.1 557 61.6
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 5.2e-182 641.7 572 59.6
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.7e-180 636.7 499 64.3
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 2.4e-179 632.9 549 61.6
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 3.9e-177 625.5 503 64.2
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 1.1e-176 624.0 515 63.5
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 2.5e-176 622.9 555 59.8
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 3.3e-176 622.5 547 60.1
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 2.8e-175 619.4 569 58.2
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 8.1e-175 617.8 547 60.3
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 1.1e-174 617.5 506 62.5
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 1.4e-174 617.1 555 59.6
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 1.8e-174 616.7 502 62.9
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 5.8e-173 611.7 538 60.4
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 2.2e-172 609.8 529 62.2
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 5.4e-171 605.1 554 58.7
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 5.4e-171 605.1 495 64.0
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 9.2e-171 604.4 535 60.2
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.6e-170 603.6 495 63.8
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 2.7e-170 602.8 538 59.1
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 7.8e-170 601.3 549 58.7
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.0e-169 600.9 558 56.6
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.7e-169 600.1 519 61.8
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.5e-168 597.0 557 58.9
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 9.5e-168 594.3 563 58.6
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.6e-167 593.6 431 69.8
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 6.2e-167 591.7 552 57.6
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.4e-165 585.5 561 58.3
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 9.9e-165 584.3 563 56.0
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.3e-164 583.9 567 55.2
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.5e-162 575.9 569 56.1
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 3.5e-162 575.9 498 59.4
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 8.1e-159 564.7 567 52.4
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 1.1e-158 564.3 508 57.3
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 5.4e-155 552.0 427 63.9
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 6.6e-153 545.0 425 64.7
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 1.4e-150 537.3 345 76.5
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 1.9e-144 516.9 530 52.3
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 3.4e-141 506.1 384 64.3
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 1.4e-134 484.2 503 55.1
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 2.8e-127 459.9 401 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 3.7e-127 459.5 523 48.4
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 1.4e-126 457.6 439 53.5
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 1.4e-115 421.0 520 46.2
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 5.7e-112 409.1 260 73.5
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 4.8e-111 406.0 457 45.3
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 9.1e-110 401.7 508 49.8
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.5e-104 384.4 552 44.7
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 4.5e-101 372.9 443 44.5
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.6e-98 364.4 474 47.0
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 2.0e-85 320.9 468 40.6
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.0e-84 318.5 501 41.5
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 6.1e-82 309.3 314 54.5
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.0e-81 308.5 307 50.2
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 2.0e-69 267.7 370 46.2
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 1.2e-64 251.9 328 41.8
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 1.1e-62 245.4 449 36.3
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 3.2e-54 217.2 263 46.8
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.2e-50 205.3 550 32.0
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 1.4e-38 165.2 535 25.6
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 8.1e-34 149.4 242 40.5
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 7.4e-27 126.3 140 52.1
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 2.1e-13 81.6 93 52.7
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 2.5e-11 74.7 79 51.9
CsaV3_3G005620 Cucumis sativus L. HOM05D002303 ORTHO05D007639 6.5e-07 60.1 231 25.5
FvH4_3g21450 Fragaria vesca HOM05D002303 ORTHO05D007639 1.9e-06 58.5 239 27.6
ClCG10G006020 Citrullus lanatus HOM05D002303 ORTHO05D007639 2.5e-06 58.2 235 25.5
FAN11G3805 Fragaria x ananassa HOM05D002303 ORTHO05D007639 2.5e-06 58.2 239 27.6
FAN21G1165 Fragaria x ananassa HOM05D002303 ORTHO05D007639 2.5e-06 58.2 237 27.0
RcHm_v2.0_Chr5g0036881 Rosa chinensis HOM05D002303 ORTHO05D007639 4.2e-06 57.4 200 27.5


User provided reference genes

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