Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.4e-131 473.0 242 100.0
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.0e-82 309.7 246 70.7
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 1.9e-61 240.0 246 58.9
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.1e-55 219.9 247 55.1
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.3e-53 212.2 239 54.4
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 7.4e-53 211.5 254 53.9
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 1.2e-47 194.1 250 50.8
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 3.0e-46 189.5 236 53.0
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 1.5e-42 177.2 241 47.3
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 3.4e-42 176.0 240 44.6
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.5e-42 175.6 240 43.3
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 5.1e-38 162.2 238 44.1
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 8.2e-36 154.8 262 46.6
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.5e-34 149.4 260 43.5
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 1.0e-33 147.9 253 43.9
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 2.2e-33 146.7 261 42.1
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.5e-32 144.1 264 43.9
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.5e-32 144.1 257 42.4
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 4.2e-32 142.5 250 43.6
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 7.2e-32 141.7 263 41.8
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 2.1e-31 140.2 253 43.5
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.7e-31 139.0 263 41.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 6.1e-31 138.7 261 41.8
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 6.1e-31 138.7 259 42.9
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 6.1e-31 138.7 258 42.6
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.0e-30 137.9 264 40.5
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 1.4e-30 137.5 258 42.6
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-30 137.5 254 42.9
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 5.2e-30 135.6 263 41.1
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 6.7e-30 135.2 256 39.1
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 8.8e-30 134.8 256 42.6
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.8e-30 134.8 256 42.6
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.8e-30 134.8 255 43.5
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.5e-29 134.0 261 41.4
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.6e-29 133.3 256 43.4
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 3.3e-29 132.9 256 40.6
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 3.3e-29 132.9 255 43.9
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 5.7e-29 132.1 256 41.8
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 5.7e-29 132.1 258 41.1
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.5e-29 131.7 225 44.9
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 9.7e-29 131.3 256 41.8
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 9.7e-29 131.3 214 43.5
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.7e-29 131.3 256 43.0
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 9.7e-29 131.3 261 40.6
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.2e-28 130.2 257 42.0
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 2.8e-28 129.8 226 42.9
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 3.7e-28 129.4 266 40.6
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.8e-28 129.0 253 41.5
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.2e-28 128.3 253 42.3
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.2e-28 128.3 253 42.3
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 8.2e-28 128.3 252 41.7
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.8e-27 127.1 277 37.9
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.4e-27 126.7 249 43.8
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-27 126.3 252 42.1
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-27 126.3 252 42.1
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.1e-27 126.3 267 40.1
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 3.1e-27 126.3 242 40.5
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 4.1e-27 125.9 252 41.7
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 9.1e-27 124.8 261 37.5
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.2e-26 124.4 262 37.0
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 1.2e-26 124.4 256 41.4
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 1.6e-26 124.0 255 38.8
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.6e-26 124.0 261 37.2
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 1.6e-26 124.0 251 41.8
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 2.0e-26 123.6 262 36.6
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.7e-26 123.2 267 39.7
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 3.5e-26 122.9 265 40.0
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 4.5e-26 122.5 257 38.9
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 4.5e-26 122.5 250 41.2
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 5.9e-26 122.1 263 38.4
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 5.9e-26 122.1 251 38.2
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 7.7e-26 121.7 255 40.4
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 7.7e-26 121.7 257 39.7
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 7.7e-26 121.7 290 39.3
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.3e-25 120.9 264 37.9
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 1.7e-25 120.6 255 39.6
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.7e-25 120.6 256 37.1
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 1.7e-25 120.6 259 39.0
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 1.7e-25 120.6 272 39.0
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.7e-25 120.6 256 37.1
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 2.2e-25 120.2 262 37.4
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 2.2e-25 120.2 260 37.7
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.2e-25 120.2 250 41.2
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 2.2e-25 120.2 251 41.4
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 2.9e-25 119.8 259 39.0
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 3.8e-25 119.4 250 38.8
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 3.8e-25 119.4 256 39.5
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 5.0e-25 119.0 246 40.2
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 5.0e-25 119.0 252 39.3
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.5e-25 118.6 172 47.7
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.1e-24 117.9 259 38.6
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 5.5e-24 115.5 256 39.8
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 7.2e-24 115.2 250 39.6
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 9.4e-24 114.8 266 38.7
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 9.4e-24 114.8 255 39.6
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-23 114.4 257 37.7
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-23 114.4 256 35.9
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.1e-23 113.6 252 38.9
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.1e-23 113.6 254 35.0
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.1e-23 113.6 269 37.5
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 2.7e-23 113.2 245 38.4
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 6.1e-23 112.1 264 38.3
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.0e-22 111.3 203 42.9
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 1.0e-22 111.3 248 39.5
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.4e-22 110.9 269 36.8
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.0e-22 109.4 249 38.2
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.2e-22 109.0 234 41.5
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 5.2e-22 109.0 188 43.1
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 8.8e-22 108.2 271 37.6
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 8.8e-22 108.2 216 39.4
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 1.2e-21 107.8 262 37.0
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.5e-21 107.5 259 38.2
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 4.4e-21 105.9 260 38.5
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 5.7e-21 105.5 255 38.8
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 5.7e-21 105.5 222 38.7
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 5.7e-21 105.5 247 35.2
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 5.7e-21 105.5 266 35.7
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.7e-20 104.0 251 37.1
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.7e-20 104.0 261 37.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 2.2e-20 103.6 253 34.4
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 2.2e-20 103.6 279 36.9
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 2.8e-20 103.2 262 37.8
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 3.7e-20 102.8 223 38.1
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 4.8e-20 102.4 157 44.6
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 4.8e-20 102.4 230 40.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.3e-20 102.1 265 36.6
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 1.1e-19 101.3 247 38.1
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 1.4e-19 100.9 211 39.8
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.8e-19 100.5 241 34.4
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.8e-19 100.5 241 34.4
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 2.4e-19 100.1 241 34.9
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 2.4e-19 100.1 212 39.6
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 4.1e-19 99.4 183 40.4
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 7.0e-19 98.6 272 36.4
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 9.1e-19 98.2 182 39.6
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 9.1e-19 98.2 178 40.4
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.6e-18 97.4 240 33.8
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.6e-18 97.4 240 33.8
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 2.7e-18 96.7 217 38.7
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 5.9e-18 95.5 244 34.8
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 5.9e-18 95.5 259 35.1
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 5.9e-18 95.5 182 41.2
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 1.0e-17 94.7 147 40.8
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 1.0e-17 94.7 165 46.1
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.2e-17 93.6 152 45.4
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 2.2e-17 93.6 213 39.0
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 5.0e-17 92.4 250 36.0
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 6.5e-17 92.0 242 35.5
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 8.5e-17 91.7 151 41.1
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 8.5e-17 91.7 264 35.2
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-16 91.3 196 38.3
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 4.2e-16 89.4 216 35.6
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 7.2e-16 88.6 206 38.8
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.2e-15 87.8 165 38.8
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 1.2e-15 87.8 152 42.1
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 3.6e-15 86.3 309 32.7
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 8.0e-15 85.1 145 38.6
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 5.2e-14 82.4 252 33.3
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 9.8e-13 78.2 256 33.6
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 9.8e-13 78.2 134 38.8
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 4.5e-10 69.3 98 45.9
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 2.3e-09 67.0 195 32.3
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 5.0e-09 65.9 252 28.6
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 1.5e-08 64.3 219 33.8
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 2.5e-08 63.5 54 63.0
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 2.5e-08 63.5 182 38.5
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 4.3e-08 62.8 233 28.3
Os02g0591500 Oryza sativa ssp. japonica HOM05D020767 ORTHO05D003885 1.6e-07 60.8 201 32.8
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 2.1e-07 60.5 140 33.6
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 8.0e-07 58.5 127 37.8
CDE05G1889 Ceratophyllum demersum HOM05D003503 ORTHO05D003885 4.0e-06 56.2 209 27.8
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 8.9e-06 55.1 118 39.8


User provided reference genes

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