Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 0.0e+00 1583.5 793 100.0
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 5.6e-158 562.4 814 43.1
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.1e-149 533.9 815 43.3
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 7.9e-144 515.4 805 41.7
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 2.4e-140 503.8 826 41.9
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 8.4e-122 442.2 805 38.6
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 9.7e-118 428.7 803 38.2
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 1.3e-117 428.3 802 38.3
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 4.1e-116 423.3 801 38.7
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 4.5e-115 419.9 801 38.2
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 1.9e-113 414.5 800 37.2
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 3.9e-111 406.8 809 37.0
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 5.1e-111 406.4 803 36.0
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 6.7e-111 406.0 803 36.2
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 8.8e-111 405.6 803 36.0
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 8.8e-111 405.6 798 36.7
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 2.5e-110 404.1 808 36.0
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 5.7e-110 402.9 805 37.1
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 3.7e-109 400.2 804 35.7
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 2.7e-104 384.0 819 36.8
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 3.6e-104 383.6 714 37.3
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 4.7e-104 383.3 784 35.8
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 7.9e-104 382.5 802 35.4
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 2.3e-103 380.9 782 35.4
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 7.4e-102 375.9 813 33.8
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 2.2e-101 374.4 813 33.5
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 2.8e-101 374.0 807 34.6
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 3.7e-101 373.6 814 33.5
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 4.8e-101 373.2 808 33.3
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 1.4e-100 371.7 852 34.7
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 3.1e-100 370.5 806 34.5
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 9.1e-100 369.0 804 35.2
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.3e-98 365.2 799 34.5
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 2.2e-98 364.4 808 33.3
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 3.8e-98 363.6 834 33.7
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 8.5e-98 362.5 815 33.4
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 3.2e-97 360.5 800 33.8
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 5.5e-97 359.8 800 33.8
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 5.5e-97 359.8 806 34.2
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 1.0e-95 355.5 814 32.8
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 1.4e-95 355.1 806 33.1
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 1.4e-95 355.1 807 33.5
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.8e-95 354.8 806 34.4
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 2.0e-94 351.3 714 36.8
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 3.3e-94 350.5 810 35.7
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 9.7e-94 349.0 794 33.6
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 1.3e-93 348.6 808 33.3
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 2.8e-93 347.4 892 32.5
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 2.4e-92 344.4 803 32.4
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 3.1e-92 344.0 742 34.4
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 7.0e-92 342.8 800 32.0
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 1.2e-91 342.0 800 33.0
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.6e-91 341.7 732 35.7
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 2.0e-91 341.3 801 32.2
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 2.6e-91 340.9 635 37.5
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 3.5e-91 340.5 800 32.6
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 1.7e-90 338.2 756 33.3
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 2.9e-90 337.4 921 31.9
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 1.9e-89 334.7 801 33.1
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 7.2e-89 332.8 591 38.2
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.2e-88 332.0 591 38.2
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 2.7e-88 330.9 754 33.7
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 4.7e-88 330.1 803 32.9
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 1.3e-85 322.0 714 35.2
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 2.2e-85 321.2 639 36.6
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 2.8e-85 320.9 634 36.1
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 6.3e-85 319.7 787 32.5
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 3.1e-84 317.4 714 33.6
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 5.4e-84 316.6 811 31.7
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 3.5e-83 313.9 775 32.0
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 2.2e-82 311.2 602 36.9
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 6.5e-82 309.7 701 34.2
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.1e-81 308.9 803 31.9
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 2.7e-80 304.3 741 33.1
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 3.0e-79 300.8 728 35.7
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 8.8e-79 299.3 566 38.2
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 8.3e-77 292.7 816 30.9
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 2.0e-75 288.1 802 30.5
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 5.0e-74 283.5 594 35.0
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 4.3e-73 280.4 808 30.1
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 1.2e-72 278.9 839 30.2
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 1.4e-71 275.4 822 30.4
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 3.0e-71 274.2 801 29.0
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 2.6e-70 271.2 713 31.6
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 2.2e-69 268.1 844 28.9
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 1.2e-67 262.3 785 30.6
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 1.6e-67 261.9 631 32.0
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 4.3e-65 253.8 677 30.0
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 8.9e-63 246.1 855 27.7
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.6e-56 225.3 317 45.7
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 1.5e-46 192.2 317 39.7
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 3.4e-46 191.0 342 37.4
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 1.2e-43 182.6 318 36.5
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 2.3e-42 178.3 556 29.5
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 6.6e-34 150.2 553 27.7
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 4.3e-25 120.9 331 30.2
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.0e-18 99.8 135 42.2
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 8.7e-18 96.7 250 31.2
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 8.1e-16 90.1 200 38.0
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 1.8e-15 89.0 211 28.9
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 2.4e-15 88.6 124 36.3
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 5.3e-15 87.4 444 22.3
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 1.5e-14 85.9 206 31.1
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.0e-13 83.2 160 30.0
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 8.4e-13 80.1 84 41.7
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 9.3e-12 76.6 134 37.3
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.2e-11 76.3 178 30.3
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 3.0e-10 71.6 164 33.5
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 6.7e-10 70.5 232 32.8
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 8.7e-10 70.1 131 36.6
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 2.8e-08 65.1 76 40.8


User provided reference genes

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