Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.8e-299 1030.8 548 100.0
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 5.0e-206 721.5 587 69.3
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.7e-201 705.3 549 67.2
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 9.4e-197 690.6 546 70.3
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.8e-195 684.5 589 67.1
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 5.4e-184 648.3 511 67.3
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 5.0e-182 641.7 510 62.5
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.1e-181 640.6 555 60.4
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.3e-181 639.0 438 73.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 4.7e-180 635.2 557 65.5
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 6.1e-180 634.8 531 60.8
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.5e-178 630.2 533 62.7
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 3.4e-178 629.0 532 60.7
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 5.7e-178 628.2 507 62.7
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.8e-177 625.9 551 58.8
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.4e-176 621.7 507 63.1
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 7.0e-176 621.3 557 60.3
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 7.0e-176 621.3 531 60.3
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 9.2e-176 620.9 520 60.8
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 9.2e-176 620.9 522 61.3
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.2e-175 620.5 515 60.8
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.6e-175 620.2 449 68.6
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 8.6e-174 614.4 552 58.9
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.1e-173 614.0 552 59.1
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.5e-173 613.6 511 61.6
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.9e-173 613.2 509 62.1
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 5.6e-173 611.7 555 58.2
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 9.5e-173 610.9 510 63.3
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 6.1e-172 608.2 596 55.7
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.0e-171 607.4 550 61.1
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.4e-171 607.1 537 59.2
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 4.0e-171 605.5 543 58.9
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.2e-171 605.1 553 59.9
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 6.8e-171 604.7 519 60.5
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.5e-170 603.6 550 57.5
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 4.4e-170 602.1 519 64.5
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 5.8e-170 601.7 599 53.9
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.7e-169 599.0 518 59.8
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 4.9e-169 598.6 525 60.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.9e-169 598.6 537 57.7
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 8.3e-169 597.8 593 55.0
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.1e-168 597.4 559 56.9
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.1e-168 597.4 528 60.2
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 3.2e-168 595.9 595 53.8
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 5.4e-168 595.1 532 57.9
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 7.0e-168 594.7 522 60.3
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 9.2e-168 594.3 541 60.4
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 3.5e-167 592.4 444 67.6
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.8e-167 591.3 562 57.1
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.3e-166 590.5 531 58.9
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.3e-166 589.7 576 54.5
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 6.6e-166 588.2 553 56.6
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.5e-165 586.3 589 54.3
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 5.6e-165 585.1 563 56.7
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 9.5e-165 584.3 590 54.6
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 9.5e-165 584.3 591 54.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.8e-164 582.8 591 53.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 4.7e-164 582.0 510 58.4
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 6.2e-164 581.6 575 55.3
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 6.8e-163 578.2 538 58.4
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 8.9e-163 577.8 531 57.8
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 8.9e-163 577.8 428 67.1
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.5e-162 577.0 558 56.5
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.6e-162 576.2 535 59.8
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 4.4e-162 575.5 517 58.8
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.7e-161 573.5 517 58.6
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.9e-161 572.8 549 56.1
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.9e-160 570.1 531 57.4
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 5.4e-160 568.5 514 57.6
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 7.1e-160 568.2 517 59.2
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.0e-159 565.1 538 55.8
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.7e-158 563.5 554 54.9
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 6.6e-158 561.6 551 54.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 6.6e-158 561.6 527 55.8
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.3e-157 559.3 533 57.4
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 4.3e-157 558.9 578 54.0
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.2e-156 557.4 537 56.2
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.1e-156 556.6 504 56.9
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.8e-156 556.2 504 56.9
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 6.8e-155 551.6 528 55.5
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.2e-154 550.8 506 55.5
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.2e-154 550.8 537 55.5
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 7.6e-154 548.1 457 60.4
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 9.9e-154 547.7 540 53.9
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 9.9e-154 547.7 531 56.1
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.2e-153 546.6 512 56.6
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.9e-153 545.4 548 54.6
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.1e-152 544.3 531 55.7
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.2e-152 542.7 513 59.6
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 7.1e-152 541.6 577 51.3
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 7.8e-151 538.1 509 55.4
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.0e-150 537.7 589 50.8
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.7e-150 537.0 574 52.1
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 5.1e-150 535.4 446 59.9
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.2e-148 530.8 359 69.4
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.8e-148 529.6 569 50.8
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.4e-147 526.6 545 53.0
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 2.6e-146 523.1 446 58.1
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.1e-144 517.7 504 54.4
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.4e-144 516.5 567 49.7
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.2e-143 514.2 412 61.7
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.1e-141 507.7 544 51.8
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.1e-141 507.7 521 52.6
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.8e-140 503.1 299 77.9
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.4e-139 500.7 321 73.5
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 7.1e-136 488.4 550 48.5
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.6e-135 487.3 571 48.5
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.6e-135 487.3 517 51.1
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.6e-135 487.3 444 54.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.7e-135 486.5 540 48.9
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 7.9e-135 485.0 535 50.3
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 1.7e-134 483.8 559 47.8
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.1e-134 482.3 314 71.0
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 8.7e-134 481.5 394 58.6
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 3.1e-131 473.0 351 62.7
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 4.2e-128 462.6 576 45.8
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 7.1e-128 461.8 534 48.7
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.1e-125 454.5 444 55.6
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 5.3e-123 445.7 533 50.5
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 4.2e-120 436.0 265 74.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.2e-114 417.9 374 53.7
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 7.6e-114 415.2 468 48.5
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.7e-113 414.1 380 52.6
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.8e-113 412.9 278 65.5
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 8.4e-113 411.8 357 54.3
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.2e-111 407.9 357 53.2
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 1.6e-111 407.5 320 61.2
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.5e-111 406.4 445 47.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.3e-109 399.8 356 53.1
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 4.3e-109 399.4 376 52.4
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 1.3e-108 397.9 246 76.0
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.6e-108 397.5 466 48.5
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.2e-108 397.1 538 40.9
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-107 394.8 449 46.8
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.1e-107 394.8 449 46.8
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.8e-107 394.0 539 41.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.8e-107 394.0 539 41.0
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 9.0e-107 391.7 511 46.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.9e-106 389.0 585 40.0
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.9e-104 384.0 540 41.5
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.7e-103 380.2 299 57.5
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 9.7e-101 371.7 439 45.1
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 9.7e-101 371.7 439 45.1
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.3e-100 371.3 430 45.8
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.3e-100 371.3 430 45.8
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.0e-97 361.7 226 71.7
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.6e-95 353.2 310 57.7
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.0e-93 347.4 462 44.4
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.0e-90 337.4 208 74.0
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.2e-88 329.7 208 72.1
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.6e-87 327.8 411 49.4
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 2.3e-86 323.9 297 50.2
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.4e-59 234.2 566 33.0
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.5e-56 224.2 290 46.2
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.6e-55 221.5 561 36.4
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.4e-51 208.4 163 60.7
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.3e-49 201.1 368 37.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 8.3e-44 182.6 124 68.5
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 2.4e-43 181.0 271 38.0
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 7.1e-43 179.5 138 61.6
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 4.6e-42 176.8 609 28.1
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.9e-40 171.4 104 74.0
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.5e-40 171.0 289 39.4
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.4e-35 154.5 79 89.9
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 5.1e-33 146.7 270 41.5
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.7e-28 131.7 81 71.6
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 4.9e-28 130.2 69 85.5
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.2e-26 125.6 103 52.4
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 3.0e-25 120.9 65 86.2
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 8.7e-25 119.4 96 58.3
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 1.6e-23 115.2 203 44.3
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.3e-12 79.0 225 31.6
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.2e-10 72.4 224 31.2
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.5e-08 65.5 230 32.6


User provided reference genes

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