Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 0.0e+00 1470.7 757 100.0
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 0.0e+00 1205.7 765 80.0
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1178.7 762 79.8
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1108.2 755 74.4
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1108.2 750 75.3
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1097.8 747 74.7
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1097.4 750 74.8
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1093.2 750 74.9
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1089.7 752 73.4
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1088.2 750 73.1
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1087.8 754 72.8
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1086.6 752 73.3
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1086.2 754 72.5
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1085.5 760 72.5
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 0.0e+00 1085.5 784 71.7
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1084.3 751 73.2
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1083.6 750 73.1
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1083.6 751 72.8
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1083.2 747 73.9
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1078.2 754 72.1
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1077.0 750 73.6
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1075.1 766 72.1
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 2.6e-311 1071.6 754 72.1
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 4.7e-311 1070.8 754 72.1
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 1.0e-310 1069.7 754 71.9
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 1.3e-310 1069.3 753 72.5
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 5.1e-310 1067.4 767 71.3
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 5.1e-310 1067.4 749 72.5
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 8.7e-310 1066.6 749 72.6
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 1.1e-309 1066.2 750 73.1
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.1e-309 1066.2 749 73.0
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.5e-309 1065.8 749 72.8
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 1.9e-309 1065.4 757 71.9
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 5.7e-309 1063.9 745 71.8
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 3.7e-308 1061.2 751 72.2
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 1.8e-307 1058.9 754 70.8
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 3.1e-307 1058.1 755 72.1
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 1.2e-306 1056.2 763 71.3
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 1.5e-306 1055.8 754 71.4
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 4.5e-306 1054.3 747 72.4
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.6e-306 1053.5 763 71.2
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 8.5e-305 1050.0 748 71.4
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 1.1e-304 1049.7 752 71.4
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.3e-302 1042.7 756 71.2
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 1.8e-302 1042.3 759 71.1
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 6.7e-302 1040.4 659 78.9
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 3.3e-301 1038.1 750 70.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 3.3e-301 1038.1 757 70.1
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 4.8e-300 1034.2 757 69.6
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 2.4e-299 1031.9 757 70.4
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 5.3e-299 1030.8 757 69.6
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 1.5e-298 1029.2 749 69.7
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.6e-298 1028.5 748 69.5
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 5.9e-298 1027.3 754 69.9
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 7.7e-298 1026.9 746 70.4
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.3e-297 1026.2 754 69.6
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.9e-296 1022.3 753 68.3
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.5e-296 1021.9 709 73.1
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.5e-296 1021.9 757 70.3
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 4.6e-295 1017.7 749 69.0
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 7.9e-295 1016.9 746 69.3
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.3e-294 1015.4 754 69.6
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.5e-293 1012.7 757 69.1
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 5.7e-293 1010.7 748 70.1
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 2.6e-290 1001.9 750 69.6
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 5.9e-290 1000.7 755 67.9
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.2e-289 998.8 746 68.9
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.9e-289 998.4 756 68.9
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 2.9e-289 998.4 745 68.6
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 9.4e-288 993.4 751 67.8
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.7e-287 991.9 749 67.7
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.3e-286 988.8 751 67.4
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 2.0e-285 985.7 745 67.7
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 2.0e-285 985.7 756 68.0
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 4.4e-285 984.6 749 66.8
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.4e-283 979.5 745 67.7
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 3.1e-283 978.4 746 67.4
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.7e-281 972.6 756 66.4
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 9.4e-280 966.8 757 65.3
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 2.0e-277 959.1 755 65.3
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 2.0e-277 959.1 755 65.3
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 4.4e-277 958.0 757 65.9
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 9.7e-277 956.8 757 65.8
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 9.7e-277 956.8 757 65.8
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-276 956.4 746 65.5
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 1.3e-276 956.4 746 65.5
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 2.8e-276 955.3 780 64.0
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 2.4e-275 952.2 752 66.1
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-274 949.9 766 65.3
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 1.2e-274 949.9 766 65.3
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.9e-272 942.6 755 64.2
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.9e-272 942.6 683 71.0
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 6.8e-270 934.1 751 64.2
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 1.7e-268 929.5 755 63.0
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.5e-264 914.4 768 64.3
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 6.8e-262 907.5 754 63.1
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 9.2e-259 897.1 644 70.7
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 9.2e-259 897.1 750 61.6
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 8.6e-257 890.6 724 64.5
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 4.4e-253 878.2 751 60.2
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 5.4e-251 871.3 703 65.3
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 2.7e-250 869.0 758 60.6
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 1.3e-249 866.7 759 59.4
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.3e-244 850.1 753 60.0
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.6e-242 843.2 813 56.7
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 3.9e-241 838.6 754 59.4
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 3.9e-241 838.6 754 59.4
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 6.6e-241 837.8 536 78.9
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 4.7e-239 831.6 753 58.7
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 1.6e-234 816.6 725 59.4
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 1.4e-230 803.5 650 65.2
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 3.3e-224 782.3 755 56.0
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 3.6e-223 778.9 525 74.1
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 3.6e-223 778.9 750 56.5
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.0e-213 746.5 754 53.7
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 6.4e-212 741.5 749 53.7
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.4e-212 741.5 528 70.5
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 1.9e-208 729.9 717 55.4
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 2.7e-202 709.5 748 51.2
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.6e-197 693.0 533 65.3
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 8.7e-193 677.9 529 66.5
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.3e-190 668.7 741 49.1
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.9e-179 633.6 749 49.9
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 7.7e-157 558.5 382 75.4
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 3.8e-156 556.2 619 51.1
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 3.4e-128 463.4 387 59.9
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 9.5e-123 445.3 345 65.5
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 7.3e-115 419.1 750 35.7
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 3.0e-108 397.1 474 49.6
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 2.4e-94 350.9 227 80.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 5.1e-92 343.2 755 29.9
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.3e-84 318.5 227 70.5
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 3.3e-83 313.9 834 29.4
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.8e-76 291.6 517 40.0
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.4e-54 218.8 215 57.7
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.0e-44 184.5 203 52.2
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.1e-41 176.0 121 72.7
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 2.9e-39 167.9 151 57.0
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.1e-33 147.9 102 70.6
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 9.1e-33 146.4 135 57.8
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 4.2e-30 137.5 100 72.0
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 1.2e-29 136.0 227 41.9
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.0e-28 132.9 113 59.3
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 5.9e-24 117.1 218 39.9
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 1.0e-23 116.3 143 51.7
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 5.0e-23 114.0 242 38.0
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.3e-22 111.3 81 71.6
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 2.6e-19 101.7 92 59.8
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.2e-18 98.6 98 49.0
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.7e-16 91.7 95 50.5
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 1.3e-15 89.4 102 46.1
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 5.0e-15 87.4 96 44.8
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.7e-13 80.9 66 60.6
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.2e-11 76.3 81 53.1
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 1.2e-11 76.3 56 67.9
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.3e-10 72.8 65 56.9
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 2.2e-10 72.0 117 39.3
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 8.3e-10 70.1 65 55.4
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 4.1e-09 67.8 101 42.6
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 7.1e-09 67.0 67 56.7
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 2.7e-08 65.1 102 44.1
FAN21G4007 Fragaria x ananassa HOM05D042832 ORTHO05D022695 2.5e-06 58.5 56 57.1


User provided reference genes

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