Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.0e-75 287.0 154 100.0
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 8.7e-19 97.8 99 53.5
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 2.5e-18 96.3 141 49.6
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 5.6e-18 95.1 155 43.2
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 3.1e-16 89.4 91 54.9
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.3e-14 84.0 73 60.3
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.2e-14 83.2 95 50.5
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 3.8e-14 82.4 96 46.9
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.9e-14 82.0 95 49.5
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.9e-14 82.0 95 49.5
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 6.4e-14 81.6 95 50.5
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.1e-13 80.9 104 46.2
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 1.9e-13 80.1 157 40.8
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.4e-13 79.7 140 40.7
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 4.2e-13 79.0 121 43.8
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 5.4e-13 78.6 78 53.8
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 5.4e-13 78.6 78 52.6
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 7.1e-13 78.2 119 42.9
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.2e-12 77.4 60 68.3
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 1.2e-12 77.4 100 46.0
AUR62033800 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.6e-12 77.0 72 56.9
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.6e-12 77.0 78 52.6
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.6e-12 77.0 128 43.8
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 1.6e-12 77.0 78 52.6
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 1.6e-12 77.0 78 51.3
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.6e-12 77.0 136 41.2
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.7e-12 76.3 123 41.5
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 3.5e-12 75.9 126 39.7
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 4.6e-12 75.5 77 50.6
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 4.6e-12 75.5 107 47.7
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 6.0e-12 75.1 134 41.8
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 7.9e-12 74.7 87 50.6
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 7.9e-12 74.7 122 41.8
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 1.0e-11 74.3 74 51.4
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.0e-11 74.3 80 46.2
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.0e-11 74.3 96 43.8
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 1.3e-11 73.9 160 38.8
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 1.3e-11 73.9 141 34.8
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.8e-11 73.6 80 46.2
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.3e-11 73.2 79 49.4
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 2.3e-11 73.2 100 45.0
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 3.0e-11 72.8 78 48.7
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.0e-11 72.8 76 51.3
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 3.0e-11 72.8 90 48.9
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 3.9e-11 72.4 89 46.1
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 3.9e-11 72.4 103 45.6
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 3.9e-11 72.4 141 34.0
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 5.1e-11 72.0 78 47.4
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 5.1e-11 72.0 165 36.4
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 6.7e-11 71.6 113 43.4
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 8.7e-11 71.2 78 47.4
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 1.1e-10 70.9 78 46.2
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 1.5e-10 70.5 78 52.6
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 1.5e-10 70.5 155 38.1
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 1.9e-10 70.1 145 36.6
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.9e-10 70.1 143 39.9
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 1.9e-10 70.1 73 50.7
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 2.5e-10 69.7 74 50.0
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.5e-10 69.7 75 46.7
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 2.5e-10 69.7 140 38.6
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 3.3e-10 69.3 115 36.5
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 3.3e-10 69.3 155 40.0
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 3.3e-10 69.3 133 38.3
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 4.3e-10 68.9 93 45.2
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 4.3e-10 68.9 146 36.3
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.3e-10 68.9 71 49.3
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 4.3e-10 68.9 103 43.7
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 5.6e-10 68.6 79 48.1
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 5.6e-10 68.6 71 49.3
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 7.4e-10 68.2 84 45.2
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 7.4e-10 68.2 158 39.2
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 9.6e-10 67.8 99 41.4
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 9.6e-10 67.8 91 44.0
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 9.6e-10 67.8 91 44.0
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 9.6e-10 67.8 143 39.2
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.3e-09 67.4 138 37.0
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 1.3e-09 67.4 158 38.0
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 1.3e-09 67.4 136 35.3
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 1.3e-09 67.4 123 40.7
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 1.3e-09 67.4 66 56.1
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.6e-09 67.0 146 35.6
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-09 67.0 132 36.4
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-09 67.0 76 46.1
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 1.6e-09 67.0 86 47.7
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 1.6e-09 67.0 56 57.1
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.6e-09 67.0 125 37.6
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.6e-09 67.0 79 45.6
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.6e-09 67.0 79 45.6
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 2.1e-09 66.6 142 37.3
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 2.1e-09 66.6 122 41.0
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 2.1e-09 66.6 80 43.8
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 2.1e-09 66.6 157 35.0
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-09 66.6 71 47.9
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 2.1e-09 66.6 78 44.9
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 2.1e-09 66.6 119 38.7
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 2.8e-09 66.2 129 34.9
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.8e-09 66.2 121 38.8
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 2.8e-09 66.2 107 40.2
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 3.7e-09 65.9 112 42.9
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 3.7e-09 65.9 140 39.3
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 3.7e-09 65.9 150 36.7
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.7e-09 65.9 75 45.3
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 3.7e-09 65.9 135 37.0
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 3.7e-09 65.9 108 38.9
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 4.8e-09 65.5 140 36.4
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 4.8e-09 65.5 75 46.7
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.8e-09 65.5 120 38.3
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.8e-09 65.5 157 33.1
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 6.2e-09 65.1 137 38.7
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 6.2e-09 65.1 62 53.2
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 8.1e-09 64.7 78 44.9
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.1e-09 64.7 157 33.1
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 1.1e-08 64.3 143 36.4
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.1e-08 64.3 71 46.5
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 1.4e-08 63.9 123 39.8
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.4e-08 63.9 121 38.8
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.4e-08 63.9 83 42.2
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 1.8e-08 63.5 151 34.4
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 1.8e-08 63.5 79 43.0
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.8e-08 63.5 128 38.3
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 1.8e-08 63.5 123 39.8
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.4e-08 63.2 72 44.4
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 2.4e-08 63.2 157 33.8
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 2.4e-08 63.2 100 42.0
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 2.4e-08 63.2 79 46.8
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 2.4e-08 63.2 79 46.8
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.4e-08 63.2 112 38.4
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 3.1e-08 62.8 150 35.3
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 3.1e-08 62.8 134 38.8
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 4.0e-08 62.4 160 35.6
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 4.0e-08 62.4 93 39.8
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.0e-08 62.4 157 32.5
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.0e-08 62.4 157 32.5
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.0e-08 62.4 79 44.3
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 4.0e-08 62.4 125 37.6
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.3e-08 62.0 130 35.4
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 6.9e-08 61.6 101 40.6
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.9e-08 61.6 130 35.4
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.9e-08 61.6 151 33.8
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 9.0e-08 61.2 79 43.0
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.5e-07 60.5 108 39.8
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 1.5e-07 60.5 146 37.0
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.5e-07 60.5 130 34.6
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 1.5e-07 60.5 76 48.7
Sp3g16360 Schrenkiella parvula HOM05D003094 ORTHO05D003482 1.5e-07 60.5 94 40.4
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 2.6e-07 59.7 150 33.3
BolC5t33491H Brassica oleracea HOM05D003094 ORTHO05D003482 3.4e-07 59.3 145 33.8
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 3.4e-07 59.3 95 38.9
PGR083G0382 Punica granatum HOM05D003094 ORTHO05D003482 3.4e-07 59.3 105 39.0
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 4.5e-07 58.9 74 43.2
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 4.5e-07 58.9 115 36.5
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 4.5e-07 58.9 156 33.3
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 5.8e-07 58.5 80 43.8
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 5.8e-07 58.5 160 33.8
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 5.8e-07 58.5 85 43.5
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 5.8e-07 58.5 157 33.1
Zm00001eb143930 Zea mays HOM05D003094 ORTHO05D003482 5.8e-07 58.5 79 41.8
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 9.9e-07 57.8 157 35.0
Os08g0513300 Oryza sativa ssp. japonica HOM05D003094 ORTHO05D003482 9.9e-07 57.8 79 43.0
Aa31LG8G5090 Aethionema arabicum HOM05D003094 ORTHO05D003482 1.3e-06 57.4 148 31.8
BcaC05g28648 Brassica carinata HOM05D003094 ORTHO05D003482 1.3e-06 57.4 146 34.2
C05p47760 Brassica napus HOM05D003094 ORTHO05D003482 1.3e-06 57.4 147 34.0
Lalb_Chr08g0242311 Lupinus albus HOM05D003094 ORTHO05D003482 1.7e-06 57.0 97 40.2
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.2e-06 56.6 168 33.3
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 2.2e-06 56.6 112 33.9
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 2.9e-06 56.2 129 34.1
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 3.8e-06 55.8 87 40.2
TPR.G25985 Trifolium pratense HOM05D003094 ORTHO05D003482 3.8e-06 55.8 80 41.2
Aqoxy1G00379 Aquilegia oxysepala HOM05D003094 ORTHO05D003482 4.9e-06 55.5 59 49.2
Nitab4.5_0004028g0060 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.9e-06 55.5 121 31.4
Nitab4.5_0008678g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 4.9e-06 55.5 65 49.2


User provided reference genes

Program Settings