Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 2.9e-230 801.6 424 100.0
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 1.7e-137 493.4 412 65.3
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 2.9e-137 492.7 387 69.8
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 9.7e-133 477.6 392 65.1
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 2.8e-132 476.1 425 64.7
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 1.4e-128 463.8 395 66.6
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 1.6e-127 460.3 389 64.0
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 4.7e-127 458.8 411 62.8
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 2.0e-125 453.4 406 60.6
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 4.8e-124 448.7 392 62.2
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 6.3e-124 448.4 389 63.2
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 6.3e-124 448.4 401 61.6
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 2.4e-123 446.4 392 63.5
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 3.1e-123 446.0 392 62.8
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 5.3e-123 445.3 395 62.3
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 2.0e-122 443.4 412 59.5
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 5.9e-122 441.8 392 61.2
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 1.3e-121 440.7 392 61.7
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 1.7e-121 440.3 395 61.0
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.7e-121 440.3 392 62.0
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 5.0e-121 438.7 431 58.0
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 5.0e-121 438.7 406 59.4
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 1.1e-120 437.6 401 59.6
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 1.5e-120 437.2 392 61.7
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 2.5e-120 436.4 401 60.6
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 4.2e-120 435.6 389 61.4
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 5.5e-120 435.3 389 60.7
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 1.2e-119 434.1 392 59.4
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 1.2e-119 434.1 407 59.7
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 1.6e-119 433.7 393 59.5
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 4.7e-119 432.2 394 60.2
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 6.1e-119 431.8 411 58.9
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 6.1e-119 431.8 395 60.5
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 1.4e-118 430.6 392 58.7
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 1.4e-118 430.6 393 60.8
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 3.0e-118 429.5 392 59.2
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 3.0e-118 429.5 409 59.7
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 3.0e-118 429.5 416 58.4
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 4.0e-118 429.1 406 58.1
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 4.0e-118 429.1 396 60.4
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 4.0e-118 429.1 396 60.4
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 4.0e-118 429.1 416 58.4
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 1.2e-117 427.6 402 57.2
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 2.0e-117 426.8 402 57.2
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 4.4e-117 425.6 409 58.7
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 5.7e-117 425.2 404 60.1
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 1.3e-116 424.1 401 57.1
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 1.3e-116 424.1 392 59.2
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 1.7e-116 423.7 401 58.4
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 3.7e-116 422.5 416 56.0
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 6.3e-116 421.8 404 59.4
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 8.2e-116 421.4 392 60.2
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 2.4e-115 419.9 396 60.1
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 1.2e-114 417.5 392 59.2
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 1.2e-114 417.5 421 56.8
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 1.3e-113 414.1 405 57.8
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 1.3e-113 414.1 402 58.0
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 6.5e-113 411.8 412 56.6
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 1.6e-111 407.1 404 57.4
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 6.1e-111 405.2 420 56.0
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 1.4e-110 404.1 403 56.1
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 1.4e-110 404.1 389 57.1
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 1.8e-110 403.7 392 58.4
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 4.0e-110 402.5 363 61.4
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 5.7e-109 398.7 401 57.6
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 5.7e-109 398.7 422 55.2
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 1.4e-107 394.0 404 56.2
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 1.8e-107 393.7 404 54.5
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 2.4e-107 393.3 402 55.7
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 3.1e-107 392.9 459 51.4
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 9.1e-107 391.3 412 53.2
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 2.0e-106 390.2 412 54.4
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 3.5e-106 389.4 402 55.2
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 4.5e-106 389.0 389 57.1
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 5.5e-104 382.1 343 61.5
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 7.2e-104 381.7 388 55.4
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 9.5e-104 381.3 412 52.9
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 6.1e-103 378.6 401 56.1
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 8.0e-103 378.3 404 52.7
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 3.0e-102 376.3 345 60.3
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 4.0e-102 375.9 412 51.9
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 8.9e-102 374.8 412 51.7
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 1.2e-101 374.4 412 51.7
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 2.6e-101 373.2 412 53.4
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 2.2e-100 370.2 423 50.6
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 2.9e-97 359.8 450 49.1
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 8.6e-97 358.2 399 53.4
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 1.4e-94 350.9 402 50.5
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 3.1e-94 349.7 401 52.9
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 3.4e-93 346.3 412 49.8
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 7.0e-91 338.6 335 57.6
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 9.2e-91 338.2 402 48.8
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 8.3e-84 315.1 290 57.9
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 8.3e-84 315.1 290 57.9
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 8.3e-84 315.1 378 51.1
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 3.6e-79 299.7 294 59.9
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 1.3e-68 264.6 370 46.5
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 1.5e-64 251.1 202 65.3
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 2.1e-55 220.7 402 38.1
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 4.8e-55 219.5 233 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 1.4e-54 218.0 397 35.8
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 5.3e-54 216.1 163 66.9
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 6.9e-54 215.7 171 63.7
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 2.7e-50 203.8 194 57.2
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 2.7e-50 203.8 400 34.5
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 3.9e-49 199.9 194 57.2
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 2.5e-43 180.6 216 46.8
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 7.9e-42 175.6 223 50.7
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 1.7e-36 157.9 311 37.0
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 8.7e-33 145.6 290 36.2
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 2.8e-31 140.6 124 58.9
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 1.5e-21 108.2 101 59.4
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 2.7e-18 97.4 124 50.8
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 4.4e-16 90.1 96 50.0
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 9.7e-16 89.0 100 46.0
Cre05.g246300 Chlamydomonas reinhardtii HOM05D005607 ORTHO05D008142 2.8e-07 60.8 229 28.8


User provided reference genes

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