Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.7e-117 425.2 203 100.0
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.2e-61 240.4 202 63.9
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.2e-45 184.9 199 48.7
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 8.1e-45 184.5 199 48.7
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.4e-43 179.1 199 47.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 4.9e-42 175.3 214 43.9
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 9.3e-41 171.0 199 45.7
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.3e-39 166.4 195 46.2
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.0e-39 166.0 199 44.2
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 3.9e-39 165.6 200 44.5
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.9e-39 165.6 200 45.5
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 5.1e-39 165.2 199 44.2
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.1e-38 164.1 199 43.7
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 1.1e-38 164.1 224 40.2
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 1.9e-38 163.3 199 43.2
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 2.5e-38 162.9 199 42.7
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 3.3e-38 162.5 200 45.0
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 7.4e-38 161.4 195 44.1
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 7.4e-38 161.4 200 45.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 9.6e-38 161.0 199 43.2
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 9.6e-38 161.0 198 44.4
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.3e-37 160.6 199 42.7
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.3e-37 160.6 199 43.7
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.6e-37 160.2 200 44.0
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 2.8e-37 159.5 198 45.5
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 3.7e-37 159.1 200 44.0
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 3.7e-37 159.1 200 45.5
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 3.7e-37 159.1 194 42.8
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 3.7e-37 159.1 194 43.3
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.8e-37 158.7 199 42.7
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 6.2e-37 158.3 195 44.6
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 6.2e-37 158.3 199 41.7
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.4e-36 157.1 200 43.0
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 2.4e-36 156.4 199 42.2
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 3.1e-36 156.0 193 43.0
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 3.1e-36 156.0 193 43.0
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 4.0e-36 155.6 213 42.3
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 5.3e-36 155.2 198 43.9
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 5.3e-36 155.2 199 41.2
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 6.9e-36 154.8 205 41.0
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.0e-36 154.5 186 45.2
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 9.0e-36 154.5 186 45.2
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 9.0e-36 154.5 196 42.9
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 1.2e-35 154.1 199 42.2
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.2e-35 154.1 200 43.5
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-35 153.7 185 45.4
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.5e-35 153.7 185 45.4
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 1.5e-35 153.7 199 40.7
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.5e-35 153.7 199 42.2
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 2.6e-35 152.9 201 42.3
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 2.6e-35 152.9 185 45.4
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.6e-35 152.9 185 45.4
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.6e-35 152.9 185 45.4
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 2.6e-35 152.9 199 40.7
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 3.4e-35 152.5 196 40.8
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 5.8e-35 151.8 200 39.5
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 7.6e-35 151.4 192 40.1
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.3e-34 150.6 236 37.3
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 2.2e-34 149.8 142 52.1
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.9e-34 149.4 203 41.9
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 2.9e-34 149.4 193 40.9
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 4.9e-34 148.7 192 38.5
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 4.9e-34 148.7 191 39.8
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 6.5e-34 148.3 200 41.0
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.1e-33 147.5 198 40.9
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 1.1e-33 147.5 191 38.7
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-33 147.5 220 38.6
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.1e-33 147.5 185 43.8
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.1e-33 147.5 205 39.5
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.4e-33 147.1 131 57.3
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 2.5e-33 146.4 200 40.5
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.5e-33 146.4 143 52.4
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.5e-33 146.4 188 43.1
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 3.2e-33 146.0 203 42.9
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 4.2e-33 145.6 197 38.6
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 4.2e-33 145.6 191 38.2
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 4.2e-33 145.6 187 40.1
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 4.2e-33 145.6 191 44.0
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 5.5e-33 145.2 199 39.7
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 7.1e-33 144.8 192 40.1
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.2e-32 144.1 200 40.0
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.2e-32 144.1 194 41.2
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.2e-32 144.1 224 39.3
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 3.5e-32 142.5 200 37.5
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 3.5e-32 142.5 195 40.5
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 4.6e-32 142.1 197 39.1
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 7.9e-32 141.4 212 36.3
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.3e-31 140.6 192 38.5
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 1.3e-31 140.6 126 51.6
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.3e-31 140.6 218 35.3
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 1.8e-31 140.2 202 38.1
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 2.3e-31 139.8 192 39.1
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 6.7e-31 138.3 200 40.0
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 6.7e-31 138.3 214 39.3
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-30 137.5 213 37.1
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-30 136.7 234 33.3
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.6e-29 133.7 199 37.7
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 3.7e-29 132.5 136 50.0
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.7e-29 132.5 116 63.8
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 2.4e-28 129.8 144 43.1
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 9.0e-28 127.9 202 36.1
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.2e-27 127.5 207 34.8
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.2e-27 127.5 201 36.8
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 4.5e-27 125.6 180 42.2
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 4.5e-27 125.6 144 44.4
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 7.6e-27 124.8 228 32.5
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 7.6e-27 124.8 178 38.2
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.0e-26 124.4 255 34.9
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 1.0e-26 124.4 138 44.9
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 9.3e-25 117.9 203 37.9
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.6e-24 117.1 170 40.6
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.6e-24 117.1 135 43.0
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.7e-24 116.3 138 44.9
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 3.5e-24 115.9 133 43.6
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.1e-22 110.9 179 38.0
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 1.9e-22 110.2 116 50.0
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 4.3e-22 109.0 113 46.0
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 5.7e-22 108.6 212 32.1
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.4e-20 103.2 75 60.0
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 2.4e-20 103.2 173 41.0
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.3e-20 102.1 75 60.0
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.3e-20 102.1 64 60.9
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 6.9e-20 101.7 64 64.1
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.5e-19 100.5 75 58.7
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.0e-19 100.1 75 58.7
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.0e-19 100.1 64 62.5
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 3.4e-19 99.4 126 41.3
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 7.7e-19 98.2 130 41.5
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 8.5e-18 94.7 124 39.5
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.1e-17 94.4 119 37.0
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.9e-17 93.6 117 41.0
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 4.2e-17 92.4 124 41.9
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 7.2e-17 91.7 95 49.5
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 1.2e-16 90.9 150 37.3
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 5.7e-14 82.0 113 38.9
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 2.4e-12 76.6 57 57.9
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 5.9e-11 72.0 84 42.9
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 5.9e-11 72.0 118 39.0
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 6.5e-10 68.6 127 33.9
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.4e-09 67.4 184 30.4
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 9.4e-09 64.7 92 43.5
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 5.1e-07 58.9 117 31.6
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.0e-06 57.0 44 50.0
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 3.3e-06 56.2 53 45.3
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 7.4e-06 55.1 99 34.3


User provided reference genes

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