Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02202 Selenicereus undatus HOM05D004029 ORTHO05D004613 0.0e+00 2521.1 1250 100.0
Ah.06g183680 Amaranthus hybridus HOM05D004029 ORTHO05D004613 0.0e+00 2134.8 1237 83.8
AUR62015624 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 2129.0 1238 84.2
AUR62029337 Chenopodium quinoa HOM05D004029 ORTHO05D004613 0.0e+00 2121.3 1238 83.8
EL10Ac4g08092 Beta vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 2087.4 1237 82.5
Sc03g0009690 Simmondsia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 2033.1 1267 78.7
CSS0001233 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1977.6 1243 78.1
CSS0038840 Camellia sinensis var. sinensis HOM05D004029 ORTHO05D004613 0.0e+00 1975.7 1243 78.1
COL.COLO4_03559 Corchorus olitorius HOM05D004029 ORTHO05D004613 0.0e+00 1975.3 1243 78.2
Duzib268G1628 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1967.2 1250 77.4
Thecc.07G074600 Theobroma cacao HOM05D004029 ORTHO05D004613 0.0e+00 1956.8 1243 77.4
Actinidia05171 Actinidia chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1943.3 1243 76.7
Manes.03G114700 Manihot esculenta HOM05D004029 ORTHO05D004613 0.0e+00 1941.8 1244 77.3
GSVIVG01014409001 Vitis vinifera HOM05D004029 ORTHO05D004613 0.0e+00 1935.2 1243 76.7
Gohir.D01G054200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1934.5 1243 75.8
Potri.011G123900 Populus trichocarpa HOM05D004029 ORTHO05D004613 0.0e+00 1933.7 1243 76.7
Nn1g03970 Nelumbo nucifera HOM05D004029 ORTHO05D004613 0.0e+00 1932.9 1243 76.9
Gorai.002G074000 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1929.1 1243 75.9
Prupe.4G187500 Prunus persica HOM05D004029 ORTHO05D004613 0.0e+00 1929.1 1243 76.5
Duzib213G0443 Durio zibethinus HOM05D004029 ORTHO05D004613 0.0e+00 1926.4 1248 75.7
MD11G1239600 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1922.9 1246 76.1
Cfa020529 Carpinus fangiana HOM05D004029 ORTHO05D004613 0.0e+00 1920.2 1246 75.8
CiPaw.11G174500 Carya illinoinensis HOM05D004029 ORTHO05D004613 0.0e+00 1917.1 1243 76.2
Rhsim06G0193700 Rhododendron simsii HOM05D004029 ORTHO05D004613 0.0e+00 1907.5 1239 75.9
CANSAT11G2434 Cannabis sativa HOM05D004029 ORTHO05D004613 0.0e+00 1906.7 1241 75.4
MD03G1222200 Malus domestica HOM05D004029 ORTHO05D004613 0.0e+00 1898.2 1244 76.0
TWI38G0763 Tripterygium wilfordii HOM05D004029 ORTHO05D004613 0.0e+00 1898.2 1242 75.6
Sabra11G0109200 Salix brachista HOM05D004029 ORTHO05D004613 0.0e+00 1895.2 1285 73.4
PSO675G2841 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1891.7 1246 74.9
PSO541G4143 Papaver somniferum HOM05D004029 ORTHO05D004613 0.0e+00 1889.8 1246 74.9
CsaV3_3G044490 Cucumis sativus L. HOM05D004029 ORTHO05D004613 0.0e+00 1885.9 1246 75.0
FAN21G1497 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1884.4 1243 74.8
Aqoxy7G04099 Aquilegia oxysepala HOM05D004029 ORTHO05D004613 0.0e+00 1883.6 1243 75.1
THA.LOC104811852 Tarenaya hassleriana HOM05D004029 ORTHO05D004613 0.0e+00 1883.6 1244 74.7
Eucgr.F03341 Eucalyptus grandis HOM05D004029 ORTHO05D004613 0.0e+00 1882.8 1245 74.2
PGR031G0420 Punica granatum HOM05D004029 ORTHO05D004613 0.0e+00 1882.1 1239 75.0
RcHm_v2.0_Chr5g0034971 Rosa chinensis HOM05D004029 ORTHO05D004613 0.0e+00 1880.9 1259 74.2
FAN25G1694 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1877.1 1243 74.6
Glyma.13G280700 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1875.5 1246 75.0
vmacro11822 Vaccinium macrocarpon HOM05D004029 ORTHO05D004613 0.0e+00 1874.4 1266 73.2
FAN16G1973 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1871.7 1243 74.4
FvH4_3g20750 Fragaria vesca HOM05D004029 ORTHO05D004613 0.0e+00 1870.1 1243 74.4
Thhalv10012467m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 0.0e+00 1867.0 1246 73.9
FAN11G1114 Fragaria x ananassa HOM05D004029 ORTHO05D004613 0.0e+00 1866.3 1243 74.3
Lalb_Chr25g0286611 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1864.7 1241 73.9
Lj3g0020332 Lotus japonicus HOM05D004029 ORTHO05D004613 0.0e+00 1860.1 1243 74.2
arahy.Tifrunner.gnm1.ann1.3J4V9H Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1859.3 1244 73.9
Carub.0008s1474 Capsella rubella HOM05D004029 ORTHO05D004613 0.0e+00 1859.0 1244 73.9
MSTRG.12924 Avicennia marina HOM05D004029 ORTHO05D004613 0.0e+00 1857.8 1245 73.5
Phvul.005G085200 Phaseolus vulgaris HOM05D004029 ORTHO05D004613 0.0e+00 1856.6 1242 74.3
HanXRQChr10g0289491 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1852.4 1241 73.2
CARHR267710 Cardamine hirsuta HOM05D004029 ORTHO05D004613 0.0e+00 1844.7 1244 73.4
Sp6g16420 Schrenkiella parvula HOM05D004029 ORTHO05D004613 0.0e+00 1844.3 1243 73.5
AT5G54440 Arabidopsis thaliana HOM05D004029 ORTHO05D004613 0.0e+00 1842.4 1246 73.2
Peaxi162Scf01111g00112 Petunia axillaris HOM05D004029 ORTHO05D004613 0.0e+00 1841.2 1243 73.5
arahy.Tifrunner.gnm1.ann1.IWX37I Arachis hypogaea HOM05D004029 ORTHO05D004613 0.0e+00 1839.7 1270 72.4
Aa31LG3G10350 Aethionema arabicum HOM05D004029 ORTHO05D004613 0.0e+00 1839.3 1246 72.8
Migut.H01912 Erythranthe guttata HOM05D004029 ORTHO05D004613 0.0e+00 1837.0 1246 72.9
ECA240G1154 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1835.8 1254 72.6
BcaC03g14313 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1831.2 1245 72.6
BolC2t07800H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1828.5 1246 72.6
Ca_01815_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1828.5 1242 73.2
A02p10290 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1827.0 1245 72.4
C02p17030 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1826.6 1246 72.5
ATR0064G128 Amborella trichopoda HOM05D004029 ORTHO05D004613 0.0e+00 1825.8 1252 72.3
DCAR_013079 Daucus carota HOM05D004029 ORTHO05D004613 0.0e+00 1825.8 1251 71.0
Sopen07g031610 Solanum pennellii HOM05D004029 ORTHO05D004613 0.0e+00 1825.1 1243 72.5
ClCG11G018320 Citrullus lanatus HOM05D004029 ORTHO05D004613 0.0e+00 1823.5 1312 70.5
Medtr2g080050 Medicago truncatula HOM05D004029 ORTHO05D004613 0.0e+00 1822.8 1242 73.0
BcaB05g22133 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1821.2 1246 72.1
Solyc07g063440.3 Solanum lycopersicum HOM05D004029 ORTHO05D004613 0.0e+00 1821.2 1243 72.4
Haze_09504 Corylus avellana HOM05D004029 ORTHO05D004613 0.0e+00 1820.1 1237 73.6
BraA02t06097Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1819.3 1251 72.0
BcaC04g20340 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1817.0 1244 72.3
CAN.G162.91 Capsicum annuum HOM05D004029 ORTHO05D004613 0.0e+00 1814.7 1244 72.5
BolC9t57346H Brassica oleracea HOM05D004029 ORTHO05D004613 0.0e+00 1812.3 1245 72.2
A10p11660 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1810.8 1244 72.2
BcaB08g35795 Brassica carinata HOM05D004029 ORTHO05D004613 0.0e+00 1810.4 1244 72.0
QL08p019114 Quercus lobata HOM05D004029 ORTHO05D004613 0.0e+00 1809.7 1502 63.2
C09p44730 Brassica napus HOM05D004029 ORTHO05D004613 0.0e+00 1805.0 1245 71.9
BraA10t43261Z Brassica rapa HOM05D004029 ORTHO05D004613 0.0e+00 1804.6 1248 72.1
Psat5g246120 Pisum sativum HOM05D004029 ORTHO05D004613 0.0e+00 1802.7 1259 71.3
Lalb_Chr01g0016971 Lupinus albus HOM05D004029 ORTHO05D004613 0.0e+00 1798.9 1241 71.7
Ciclev10007273m.g Citrus clementina HOM05D004029 ORTHO05D004613 0.0e+00 1786.9 1241 72.0
Lj1C850G7 Lonicera japonica HOM05D004029 ORTHO05D004613 0.0e+00 1776.5 1254 71.6
Lsat_1_v5_gn_9_95861 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1769.6 1235 71.4
Ca_30535_v3 Cicer arietinum L. HOM05D004029 ORTHO05D004613 0.0e+00 1768.8 1242 71.7
SGA_v2.0_scaffold77G25216 Striga asiatica HOM05D004029 ORTHO05D004613 0.0e+00 1753.0 1307 67.6
Sed0019496 Sechium edule HOM05D004029 ORTHO05D004613 0.0e+00 1741.1 1165 74.2
Os12g0554400 Oryza sativa ssp. japonica HOM05D004029 ORTHO05D004613 0.0e+00 1697.6 1242 67.5
VMungo1080G0798 Vigna mungo HOM05D004029 ORTHO05D004613 0.0e+00 1693.3 1145 72.7
Lsat_1_v5_gn_7_105721 Lactuca sativa HOM05D004029 ORTHO05D004613 0.0e+00 1681.8 1238 67.6
Gorai.007G319300 Gossypium raimondii HOM05D004029 ORTHO05D004613 0.0e+00 1601.3 1079 72.8
ECA236G3046 Erigeron canadensis HOM05D004029 ORTHO05D004613 0.0e+00 1591.6 1223 64.8
Oeu008022.1 Olea europaea HOM05D004029 ORTHO05D004613 0.0e+00 1572.0 1079 71.9
Nitab4.5_0001204g0130 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1557.3 1052 73.9
Glyma.12G220900 Glycine max HOM05D004029 ORTHO05D004613 0.0e+00 1542.3 1007 76.5
Atru.chr2.2811 Acer truncatum HOM05D004029 ORTHO05D004613 0.0e+00 1533.1 1017 74.7
HanXRQChr13g0386411 Helianthus annuus HOM05D004029 ORTHO05D004613 0.0e+00 1531.9 1243 61.2
Gohir.A11G282734 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1490.3 1045 71.6
AL8G29790 Arabidopsis lyrata HOM05D004029 ORTHO05D004613 0.0e+00 1458.7 1017 71.7
Nitab4.5_0000815g0060 Nicotiana tabacum HOM05D004029 ORTHO05D004613 0.0e+00 1435.6 1098 67.2
Gohir.D11G296200 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1394.0 1003 70.0
Gohir.A01G067000 Gossypium hirsutum HOM05D004029 ORTHO05D004613 0.0e+00 1382.1 856 78.6
TAR627G0860 Trochodendron aralioides HOM05D004029 ORTHO05D004613 0.0e+00 1376.3 908 75.8
Mapoly0031s0138 Marchantia polymorpha HOM05D004029 ORTHO05D004613 0.0e+00 1275.8 1383 49.3
Pp3c26_12060 Physcomitrium patens HOM05D004029 ORTHO05D004613 0.0e+00 1171.4 1346 47.7
unitig_0.g2259 Utricularia gibba HOM05D004029 ORTHO05D004613 0.0e+00 1165.2 1247 52.2
Zm00001eb137170 Zea mays HOM05D004029 ORTHO05D004613 0.0e+00 1126.7 746 73.7
MELO3C018224.2 Cucumis melo HOM05D004029 ORTHO05D004613 0.0e+00 1082.4 764 71.2
CDE05G1182 Ceratophyllum demersum HOM05D004029 ORTHO05D004613 0.0e+00 1078.5 848 64.2
AagrBONN_evm.TU.Sc2ySwM_344.2130 Anthoceros agrestis HOM05D004029 ORTHO05D004613 1.3e-281 973.8 1147 45.9
Cpa.g.sc80.100 Carica papaya HOM05D004029 ORTHO05D004613 2.7e-279 966.1 996 53.8
Dinv08327 Davidia involucrata HOM05D004029 ORTHO05D004613 3.1e-264 916.0 592 76.9
Gohir.1Z049674 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.2e-247 860.9 535 77.9
Psat4g074000 Pisum sativum HOM05D004029 ORTHO05D004613 4.7e-244 849.0 895 52.4
Psat3g119680 Pisum sativum HOM05D004029 ORTHO05D004613 1.9e-205 720.7 443 78.8
CBR_g48014 Chara braunii HOM05D004029 ORTHO05D004613 4.5e-202 709.5 1424 32.9
Dinv08328 Davidia involucrata HOM05D004029 ORTHO05D004613 6.5e-169 599.4 437 68.6
SEGI_15865 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.2e-157 562.0 489 58.7
TAR627G0431 Trochodendron aralioides HOM05D004029 ORTHO05D004613 3.2e-152 543.9 306 84.3
SHI21494 Sapria himalayana HOM05D004029 ORTHO05D004613 2.8e-119 434.5 318 67.0
Rhsim06G0194500 Rhododendron simsii HOM05D004029 ORTHO05D004613 1.9e-99 368.6 205 85.4
SEGI_37124 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.4e-91 342.4 316 60.1
Pp3c3_4080 Physcomitrium patens HOM05D004029 ORTHO05D004613 2.7e-90 338.2 372 47.6
HPP92_020359 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.5e-88 331.6 194 79.4
SMO115G0239 Selaginella moellendorffii HOM05D004029 ORTHO05D004613 3.3e-80 304.7 260 58.5
Atru.chr2.2810 Acer truncatum HOM05D004029 ORTHO05D004613 2.6e-77 295.0 172 79.7
Dinv08326 Davidia involucrata HOM05D004029 ORTHO05D004613 2.3e-73 282.0 159 85.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.3e-72 277.7 229 63.8
Lsat_1_v5_gn_3_80381 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-71 275.8 255 57.6
Lsat_1_v5_gn_4_112941 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-71 275.8 255 57.6
Lsat_1_v5_gn_7_74701 Lactuca sativa HOM05D004029 ORTHO05D004613 1.7e-71 275.8 255 57.6
Psat1g176880 Pisum sativum HOM05D004029 ORTHO05D004613 1.4e-70 272.7 225 63.6
Atru.chr2.2808 Acer truncatum HOM05D004029 ORTHO05D004613 4.5e-69 267.7 152 82.2
SEGI_39917 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 5.7e-64 250.8 249 54.2
Thhalv10015732m.g Eutrema salsugineum HOM05D004029 ORTHO05D004613 2.5e-59 235.3 165 69.7
Gohir.1Z049574 Gossypium hirsutum HOM05D004029 ORTHO05D004613 7.4e-56 223.8 166 68.7
Sed0014205 Sechium edule HOM05D004029 ORTHO05D004613 6.3e-55 220.7 181 64.1
HPP92_020356 Vanilla planifolia HOM05D004029 ORTHO05D004613 6.3e-55 220.7 434 32.7
ATR0693G140 Amborella trichopoda HOM05D004029 ORTHO05D004613 7.7e-53 213.8 138 75.4
ATR0693G350 Amborella trichopoda HOM05D004029 ORTHO05D004613 3.2e-51 208.4 149 68.5
Actinidia39414 Actinidia chinensis HOM05D004029 ORTHO05D004613 1.8e-49 202.6 135 71.1
Gohir.A11G282591 Gossypium hirsutum HOM05D004029 ORTHO05D004613 1.8e-49 202.6 139 68.3
Solyc07g063450.3 Solanum lycopersicum HOM05D000461 ORTHO05D001829 1.5e-43 183.0 206 46.1
Lsat_1_v5_gn_8_16361 Lactuca sativa HOM05D004029 ORTHO05D004613 2.1e-42 179.1 121 72.7
HPP92_027774 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.1e-38 166.8 107 77.6
HPP92_020357 Vanilla planifolia HOM05D004029 ORTHO05D004613 4.1e-38 164.9 120 70.8
Psat7g242400 Pisum sativum HOM05D004029 ORTHO05D004613 7.7e-37 160.6 102 78.4
Dinv22372 Davidia involucrata HOM05D004029 ORTHO05D004613 1.0e-36 160.2 116 69.8
HPP92_027773 Vanilla planifolia HOM05D004029 ORTHO05D004613 2.9e-36 158.7 98 81.6
GSVIVG01015766001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.3e-33 149.1 92 73.9
GSVIVG01005601001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.9e-33 147.1 92 73.9
GSVIVG01006099001 Vitis vinifera HOM05D004029 ORTHO05D004613 8.9e-33 147.1 92 73.9
GSVIVG01016530001 Vitis vinifera HOM05D004029 ORTHO05D004613 2.0e-32 146.0 92 73.9
Gohir.D11G296250 Gossypium hirsutum HOM05D004029 ORTHO05D004613 3.7e-31 141.7 81 75.3
SEGI_16455 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.4e-30 139.8 78 80.8
GSVIVG01030797001 Vitis vinifera HOM05D004029 ORTHO05D004613 7.0e-30 137.5 92 70.7
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 2.0e-29 136.0 123 55.3
Lsat_1_v5_gn_8_16381 Lactuca sativa HOM05D004029 ORTHO05D004613 5.6e-27 127.9 87 70.1
Medtr4g126280 Medicago truncatula HOM05D004029 ORTHO05D004613 2.3e-25 122.5 65 83.1
CBR_g48013 Chara braunii HOM05D004029 ORTHO05D004613 7.8e-21 107.5 107 49.5
Lsat_1_v5_gn_6_53560 Lactuca sativa HOM05D004029 ORTHO05D004613 6.6e-20 104.4 111 50.5
Cfa025671 Carpinus fangiana HOM05D004029 ORTHO05D004613 2.1e-18 99.4 582 24.2
SEGI_17451 Sequoiadendron giganteum HOM05D004029 ORTHO05D004613 1.1e-17 97.1 62 69.4
MD16G1231300 Malus domestica HOM05D004029 ORTHO05D004613 1.5e-16 93.2 57 73.7
Lsat_1_v5_gn_8_148540 Lactuca sativa HOM05D004029 ORTHO05D004613 3.4e-16 92.0 81 59.3
HPP92_020358 Vanilla planifolia HOM05D004029 ORTHO05D004613 1.7e-15 89.7 65 66.2
Psat0ss25761g0120 Pisum sativum HOM05D000735 ORTHO05D004613 6.4e-15 87.8 90 47.8
Lsat_1_v5_gn_4_161921 Lactuca sativa HOM05D004029 ORTHO05D004613 6.0e-13 81.3 99 47.5
Pp3c3_4110 Physcomitrium patens HOM05D004029 ORTHO05D004613 1.1e-11 77.0 75 53.3
CSS0007909 Camellia sinensis var. sinensis HOM05D001136 ORTHO05D004613 2.5e-11 75.9 50 72.0
Cre01.g003500 Chlamydomonas reinhardtii HOM05D004029 ORTHO05D004613 3.3e-11 75.5 379 21.6
MBI16_g04070_MAGBIO Magnolia biondii HOM05D005084 ORTHO05D006254 2.6e-08 65.9 52 63.5
ATR0693G070 Amborella trichopoda HOM05D004029 ORTHO05D004613 4.9e-07 61.6 57 52.6


User provided reference genes

Program Settings