Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02149 Selenicereus undatus HOM05D006094 ORTHO05D007761 7.1e-133 477.2 239 100.0
AUR62029246 Chenopodium quinoa HOM05D006094 ORTHO05D007761 1.9e-77 293.1 190 76.3
EL10Ac4g07994 Beta vulgaris HOM05D006094 ORTHO05D007761 7.3e-77 291.2 236 63.1
Sc03g0009180 Simmondsia chinensis HOM05D006094 ORTHO05D007761 5.2e-75 285.0 194 74.2
AUR62034219 Chenopodium quinoa HOM05D006094 ORTHO05D007761 2.0e-74 283.1 190 74.7
Ah.16g106570 Amaranthus hybridus HOM05D006094 ORTHO05D007761 1.9e-69 266.5 223 63.2
Nn1g06934 Nelumbo nucifera HOM05D006094 ORTHO05D007761 1.2e-68 263.8 190 68.4
CDE05G2809 Ceratophyllum demersum HOM05D006094 ORTHO05D007761 1.4e-67 260.4 186 71.5
QL08p014044 Quercus lobata HOM05D006094 ORTHO05D007761 1.8e-67 260.0 194 70.1
Ciclev10009584m.g Citrus clementina HOM05D006094 ORTHO05D007761 2.3e-67 259.6 195 67.7
MELO3C031870.2 Cucumis melo HOM05D006094 ORTHO05D007761 6.8e-67 258.1 202 67.8
Eucgr.F03416 Eucalyptus grandis HOM05D006094 ORTHO05D007761 6.8e-67 258.1 191 64.9
Atru.chr2.3143 Acer truncatum HOM05D006094 ORTHO05D007761 1.2e-66 257.3 195 68.7
arahy.Tifrunner.gnm1.ann1.KVK1VL Arachis hypogaea HOM05D006094 ORTHO05D007761 4.4e-66 255.4 191 67.0
MD11G1229300 Malus domestica HOM05D006094 ORTHO05D007761 4.4e-66 255.4 191 68.1
arahy.Tifrunner.gnm1.ann1.WIG9V3 Arachis hypogaea HOM05D006094 ORTHO05D007761 5.8e-66 255.0 191 66.5
Gohir.D01G059600 Gossypium hirsutum HOM05D006094 ORTHO05D007761 5.8e-66 255.0 195 67.2
Gorai.002G080800 Gossypium raimondii HOM05D006094 ORTHO05D007761 5.8e-66 255.0 195 67.2
MD03G1214300 Malus domestica HOM05D006094 ORTHO05D007761 5.8e-66 255.0 192 68.8
THA.LOC104809288 Tarenaya hassleriana HOM05D006094 ORTHO05D007761 7.5e-66 254.6 196 67.3
Prupe.4G200400 Prunus persica HOM05D006094 ORTHO05D007761 9.8e-66 254.2 195 68.2
Glyma.13G285600 Glycine max HOM05D006094 ORTHO05D007761 1.3e-65 253.8 195 65.6
AL8G30060 Arabidopsis lyrata HOM05D006094 ORTHO05D007761 1.7e-65 253.4 198 65.7
Hma1.2p1_1054F.1_g252540 Hydrangea macrophylla HOM05D006094 ORTHO05D007761 1.7e-65 253.4 194 67.5
Manes.03G121040 Manihot esculenta HOM05D006094 ORTHO05D007761 1.7e-65 253.4 194 65.5
CDE02G2884 Ceratophyllum demersum HOM05D006094 ORTHO05D007761 2.2e-65 253.1 186 69.4
COL.COLO4_09549 Corchorus olitorius HOM05D006094 ORTHO05D007761 2.2e-65 253.1 195 66.7
CANSAT11G1866 Cannabis sativa HOM05D006094 ORTHO05D007761 6.4e-65 251.5 193 68.4
CiPaw.11G182300 Carya illinoinensis HOM05D006094 ORTHO05D007761 6.4e-65 251.5 194 66.5
Gohir.A01G073000 Gossypium hirsutum HOM05D006094 ORTHO05D007761 6.4e-65 251.5 195 66.2
Sp6g16570 Schrenkiella parvula HOM05D006094 ORTHO05D007761 6.4e-65 251.5 198 65.2
ClCG10G006290 Citrullus lanatus HOM05D006094 ORTHO05D007761 8.3e-65 251.1 197 67.5
Haze_09585 Corylus avellana HOM05D006094 ORTHO05D007761 8.3e-65 251.1 194 66.0
FAN16G1255 Fragaria x ananassa HOM05D006094 ORTHO05D007761 8.3e-65 251.1 192 67.2
RcHm_v2.0_Chr5g0037061 Rosa chinensis HOM05D006094 ORTHO05D007761 8.3e-65 251.1 188 69.1
Aqoxy1G03827 Aquilegia oxysepala HOM05D006094 ORTHO05D007761 1.4e-64 250.4 189 66.1
Carub.0008s1487 Capsella rubella HOM05D006094 ORTHO05D007761 1.4e-64 250.4 199 64.8
CARHR267890 Cardamine hirsuta HOM05D006094 ORTHO05D007761 1.4e-64 250.4 198 65.7
Thhalv10014723m.g Eutrema salsugineum HOM05D006094 ORTHO05D007761 1.4e-64 250.4 201 65.2
Potri.001G415400 Populus trichocarpa HOM05D006094 ORTHO05D007761 1.4e-64 250.4 195 65.1
AT5G54600 Arabidopsis thaliana HOM05D006094 ORTHO05D007761 1.9e-64 250.0 198 65.7
BcaC04g20323 Brassica carinata HOM05D006094 ORTHO05D007761 1.9e-64 250.0 198 64.6
BolC9t57371H Brassica oleracea HOM05D006094 ORTHO05D007761 1.9e-64 250.0 198 64.6
Cfa020459 Carpinus fangiana HOM05D006094 ORTHO05D007761 1.9e-64 250.0 194 66.5
Dinv22319 Davidia involucrata HOM05D006094 ORTHO05D007761 1.9e-64 250.0 193 66.3
Duzib213G0969 Durio zibethinus HOM05D006094 ORTHO05D007761 1.9e-64 250.0 195 65.6
GSVIVG01014572001 Vitis vinifera HOM05D006094 ORTHO05D007761 1.9e-64 250.0 196 65.3
A10p11820 Brassica napus HOM05D006094 ORTHO05D007761 2.4e-64 249.6 198 64.6
BraA10t43280Z Brassica rapa HOM05D006094 ORTHO05D007761 2.4e-64 249.6 198 64.6
FvH4_3g21600 Fragaria vesca HOM05D006094 ORTHO05D007761 3.2e-64 249.2 192 67.2
FAN11G0194 Fragaria x ananassa HOM05D006094 ORTHO05D007761 3.2e-64 249.2 192 67.2
TAR627G0546 Trochodendron aralioides HOM05D006094 ORTHO05D007761 3.2e-64 249.2 191 64.9
Glyma.12G215900 Glycine max HOM05D006094 ORTHO05D007761 7.0e-64 248.1 195 64.6
PGR031G3561 Punica granatum HOM05D006094 ORTHO05D007761 9.2e-64 247.7 199 64.8
Aa31LG3G10550 Aethionema arabicum HOM05D006094 ORTHO05D007761 1.2e-63 247.3 196 62.8
Sed0023243 Sechium edule HOM05D006094 ORTHO05D007761 1.2e-63 247.3 196 66.8
Thecc.07G056100 Theobroma cacao HOM05D006094 ORTHO05D007761 1.2e-63 247.3 195 64.6
Cc05_g13100 Coffea canephora HOM05D006094 ORTHO05D007761 2.0e-63 246.5 191 67.0
SGA_v2.0_scaffold9G05013 Striga asiatica HOM05D006094 ORTHO05D007761 2.0e-63 246.5 191 65.4
VMungo1080G1399 Vigna mungo HOM05D006094 ORTHO05D007761 2.0e-63 246.5 179 67.0
C09p44940 Brassica napus HOM05D006094 ORTHO05D007761 2.7e-63 246.1 197 63.5
Lj3g0006112 Lotus japonicus HOM05D006094 ORTHO05D007761 2.7e-63 246.1 198 65.7
Lalb_Chr14g0366021 Lupinus albus HOM05D006094 ORTHO05D007761 2.7e-63 246.1 193 64.2
MBI19_g03677_MAGBIO Magnolia biondii HOM05D006094 ORTHO05D007761 2.7e-63 246.1 185 66.5
BcaB05g22149 Brassica carinata HOM05D006094 ORTHO05D007761 3.5e-63 245.7 201 64.2
Lsat_1_v5_gn_9_94980 Lactuca sativa HOM05D006094 ORTHO05D007761 3.5e-63 245.7 194 64.4
HPP92_013305 Vanilla planifolia HOM05D006094 ORTHO05D007761 4.6e-63 245.4 192 67.2
FAN25G1510 Fragaria x ananassa HOM05D006094 ORTHO05D007761 6.0e-63 245.0 203 63.5
Nitab4.5_0000552g0050 Nicotiana tabacum HOM05D006094 ORTHO05D007761 7.8e-63 244.6 193 65.3
Actinidia10699 Actinidia chinensis HOM05D006094 ORTHO05D007761 1.0e-62 244.2 193 64.8
Actinidia35309 Actinidia chinensis HOM05D006094 ORTHO05D007761 1.3e-62 243.8 193 64.2
Psat5g249200 Pisum sativum HOM05D006094 ORTHO05D007761 1.3e-62 243.8 190 67.9
Medtr2g082410 Medicago truncatula HOM05D006094 ORTHO05D007761 1.7e-62 243.4 191 65.4
Phvul.005G090100 Phaseolus vulgaris HOM05D006094 ORTHO05D007761 1.7e-62 243.4 193 63.2
BcaC03g14300 Brassica carinata HOM05D006094 ORTHO05D007761 2.3e-62 243.0 197 63.5
BolC2t07786H Brassica oleracea HOM05D006094 ORTHO05D007761 2.3e-62 243.0 197 63.5
CAN.G1110.18 Capsicum annuum HOM05D006094 ORTHO05D007761 2.3e-62 243.0 196 64.8
PGSC0003DMG400019266 Solanum tuberosum HOM05D006094 ORTHO05D007761 2.3e-62 243.0 191 63.9
C02p16840 Brassica napus HOM05D006094 ORTHO05D007761 3.0e-62 242.7 197 63.5
Ca_01774_v3 Cicer arietinum L. HOM05D006094 ORTHO05D007761 3.0e-62 242.7 191 65.4
BraA02t06085Z Brassica rapa HOM05D006094 ORTHO05D007761 3.9e-62 242.3 197 64.0
Nitab4.5_0002342g0150 Nicotiana tabacum HOM05D006094 ORTHO05D007761 6.6e-62 241.5 196 64.3
Sopen07g032100 Solanum pennellii HOM05D006094 ORTHO05D007761 1.1e-61 240.7 191 63.4
A02p10140 Brassica napus HOM05D006094 ORTHO05D007761 1.5e-61 240.4 197 63.5
Peaxi162Scf01086g00024 Petunia axillaris HOM05D006094 ORTHO05D007761 1.5e-61 240.4 191 63.4
Solyc07g063960.3 Solanum lycopersicum HOM05D006094 ORTHO05D007761 1.5e-61 240.4 191 62.8
MSTRG.12948 Avicennia marina HOM05D006094 ORTHO05D007761 1.9e-61 240.0 192 63.5
Cpa.g.sc97.91 Carica papaya HOM05D006094 ORTHO05D007761 3.3e-61 239.2 194 67.0
PSO832G4295 Papaver somniferum HOM05D006094 ORTHO05D007761 5.6e-61 238.4 190 63.7
RhsimUnG0254000 Rhododendron simsii HOM05D006094 ORTHO05D007761 7.3e-61 238.0 197 66.0
PSO210G7521 Papaver somniferum HOM05D006094 ORTHO05D007761 1.2e-60 237.3 190 63.2
TPR.G36823 Trifolium pratense HOM05D006094 ORTHO05D007761 1.2e-60 237.3 193 65.3
vmacro22727 Vaccinium macrocarpon HOM05D006094 ORTHO05D007761 2.1e-60 236.5 192 64.1
vmacro22759 Vaccinium macrocarpon HOM05D006094 ORTHO05D007761 2.1e-60 236.5 192 64.1
SalBow7G2145 Salvia bowleyana HOM05D006094 ORTHO05D007761 6.2e-60 235.0 189 62.4
Migut.H01870 Erythranthe guttata HOM05D006094 ORTHO05D007761 8.1e-60 234.6 179 63.7
HanXRQChr03g0076231 Helianthus annuus HOM05D006094 ORTHO05D007761 1.1e-59 234.2 196 60.7
DCAR_012725 Daucus carota HOM05D006094 ORTHO05D007761 1.8e-59 233.4 191 61.8
TWI39G1263 Tripterygium wilfordii HOM05D006094 ORTHO05D007761 2.0e-58 229.9 188 60.6
Sabra16G0282000 Salix brachista HOM05D006094 ORTHO05D007761 9.9e-58 227.6 207 59.4
Nitab4.5_0002229g0050 Nicotiana tabacum HOM05D006094 ORTHO05D007761 2.9e-57 226.1 193 61.7
ATR1088G047 Amborella trichopoda HOM05D006094 ORTHO05D007761 4.9e-57 225.3 154 69.5
Nitab4.5_0006304g0020 Nicotiana tabacum HOM05D006094 ORTHO05D007761 1.4e-56 223.8 202 59.9
TWI38G1667 Tripterygium wilfordii HOM05D006094 ORTHO05D007761 2.4e-56 223.0 194 57.7
unitig_0.g2378 Utricularia gibba HOM05D006094 ORTHO05D007761 3.0e-54 216.1 192 57.8
FAN21G3550 Fragaria x ananassa HOM05D006094 ORTHO05D007761 5.1e-54 215.3 164 67.1
Lj1A861T62 Lonicera japonica HOM05D006094 ORTHO05D007761 5.1e-54 215.3 159 68.6
BcaB08g35821 Brassica carinata HOM05D006094 ORTHO05D007761 2.5e-53 213.0 197 58.9
Rhsim02G0093900 Rhododendron simsii HOM05D006094 ORTHO05D007761 3.3e-53 212.6 149 70.5
PGSC0003DMG400025013 Solanum tuberosum HOM05D006094 ORTHO05D007761 3.3e-53 212.6 263 46.4
Os06g0683200 Oryza sativa ssp. japonica HOM05D006094 ORTHO05D007761 5.6e-53 211.8 186 60.2
SEGI_26346 Sequoiadendron giganteum HOM05D006094 ORTHO05D007761 1.2e-52 210.7 188 57.4
Zm00001eb225380 Zea mays HOM05D006094 ORTHO05D007761 1.2e-52 210.7 188 59.6
ECA240G4288 Erigeron canadensis HOM05D000089 ORTHO05D007761 1.2e-50 204.1 166 64.5
Pp3c15_17530 Physcomitrium patens HOM05D006094 ORTHO05D007761 2.2e-49 199.9 186 56.5
Pp3c9_9200 Physcomitrium patens HOM05D006094 ORTHO05D007761 5.4e-48 195.3 173 57.2
Mapoly0006s0262 Marchantia polymorpha HOM05D006094 ORTHO05D007761 2.7e-47 193.0 187 56.1
CBR_g8903 Chara braunii HOM05D006094 ORTHO05D007761 1.5e-42 177.2 176 53.4
A03p14540 Brassica napus HOM05D006094 ORTHO05D007761 9.9e-42 174.5 129 66.7
SMO356G0620 Selaginella moellendorffii HOM05D006094 ORTHO05D007761 9.3e-40 167.9 175 52.0
MCO02G437 Micromonas commoda HOM05D006094 ORTHO05D007761 1.5e-29 134.0 156 48.1
Cre16.g652550 Chlamydomonas reinhardtii HOM05D006094 ORTHO05D007761 2.1e-28 130.2 121 52.9
BcaB01g04302 Brassica carinata HOM05D000166 ORTHO05D002123 1.1e-24 117.9 220 36.8
PRCOL_00001762 Prasinoderma coloniale HOM05D006094 ORTHO05D007761 1.9e-24 117.1 125 48.8
Glyma.03G065500 Glycine max HOM05D000066 ORTHO05D000072 5.1e-22 109.0 107 55.1
BcaC01g06269 Brassica carinata HOM05D006094 ORTHO05D039092 3.8e-17 92.8 110 47.3
C03p16990 Brassica napus HOM05D006094 ORTHO05D040748 1.9e-16 90.5 60 68.3
Migut.H01869 Erythranthe guttata HOM05D006094 ORTHO05D007761 2.3e-14 83.6 60 63.3
MCO13G165 Micromonas commoda HOM05D004691 ORTHO05D005552 2.2e-12 77.0 113 35.4
Glyma.07G180400 Glycine max HOM05D004691 ORTHO05D005552 1.4e-11 74.3 110 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3924 Anthoceros agrestis HOM05D004691 ORTHO05D005552 2.4e-11 73.6 116 37.1
HPP92_004579 Vanilla planifolia HOM05D004691 ORTHO05D005552 2.0e-10 70.5 113 35.4
Medtr2g082320 Medicago truncatula HOM05D006094 ORTHO05D007761 2.6e-10 70.1 76 50.0
Pp3c2_11670 Physcomitrium patens HOM05D004691 ORTHO05D005552 1.0e-09 68.2 94 40.4
Sabra04G0041500 Salix brachista HOM05D004691 ORTHO05D005552 1.3e-09 67.8 110 39.1
AUR62029250 Chenopodium quinoa HOM05D000067 ORTHO05D000097 1.7e-09 67.4 76 47.4
SMO347G0488 Selaginella moellendorffii HOM05D004691 ORTHO05D005552 6.5e-09 65.5 103 40.8
Cfa006171 Carpinus fangiana HOM05D004691 ORTHO05D005552 8.5e-09 65.1 104 38.5
BolC3t14160H Brassica oleracea HOM05D006094 ORTHO05D039092 9.4e-08 61.6 62 53.2
Actinidia00785 Actinidia chinensis HOM05D004691 ORTHO05D005552 7.9e-07 58.5 74 37.8


User provided reference genes

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