Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.0e-185 653.3 337 100.0
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.4e-150 536.6 340 80.6
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.4e-147 526.6 339 79.6
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.2e-147 525.4 339 79.6
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 2.7e-146 522.3 339 78.8
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.0e-145 520.4 337 79.5
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 3.0e-145 518.8 338 80.2
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 5.1e-145 518.1 339 78.2
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.1e-134 483.8 316 78.8
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 5.3e-134 481.5 318 78.6
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 2.9e-132 475.7 340 71.2
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.5e-132 474.6 339 71.7
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.6e-130 469.9 297 78.1
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 4.7e-130 468.4 274 83.6
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 1.8e-129 466.5 311 75.2
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 2.3e-129 466.1 341 70.4
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 3.0e-129 465.7 300 78.3
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 6.8e-129 464.5 300 76.3
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.2e-128 463.8 318 73.0
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.4e-128 462.2 339 69.6
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 4.4e-128 461.8 295 76.6
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 4.4e-128 461.8 343 70.0
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 7.5e-128 461.1 335 71.3
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 1.3e-127 460.3 313 73.2
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 2.2e-127 459.5 335 71.0
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 8.3e-127 457.6 300 75.0
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 8.3e-127 457.6 339 69.3
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.8e-126 456.4 359 67.4
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 2.4e-126 456.1 319 73.4
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.1e-126 455.7 337 69.1
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.1e-126 455.3 341 69.5
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.2e-125 453.8 300 74.3
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-125 453.8 341 69.2
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 1.6e-125 453.4 346 69.1
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.6e-125 453.4 278 79.9
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.0e-125 453.0 337 70.3
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 2.7e-125 452.6 313 74.4
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 2.7e-125 452.6 304 74.3
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 2.7e-125 452.6 300 76.7
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 3.5e-125 452.2 298 75.8
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.3e-124 450.3 277 79.8
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.7e-124 449.9 319 71.8
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 1.7e-124 449.9 289 76.1
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.7e-124 449.9 316 72.5
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 2.9e-124 449.1 338 69.5
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.8e-124 448.7 290 76.2
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 3.8e-124 448.7 304 73.7
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 5.0e-124 448.4 283 78.1
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 6.5e-124 448.0 284 76.1
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 6.5e-124 448.0 304 73.7
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 6.5e-124 448.0 308 72.7
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 8.5e-124 447.6 301 74.4
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 8.5e-124 447.6 324 70.7
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 8.5e-124 447.6 303 74.3
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.1e-123 447.2 319 71.2
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.1e-123 447.2 304 73.4
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 1.1e-123 447.2 338 69.2
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.1e-123 447.2 304 73.4
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 1.5e-123 446.8 277 79.1
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.9e-123 446.4 302 74.8
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.9e-123 446.4 277 79.1
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.5e-123 446.0 277 78.7
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 2.5e-123 446.0 337 69.1
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 3.2e-123 445.7 297 74.7
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 4.2e-123 445.3 278 78.8
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 5.5e-123 444.9 324 69.4
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 5.5e-123 444.9 324 69.4
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 5.5e-123 444.9 345 65.5
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 9.4e-123 444.1 341 66.3
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 1.2e-122 443.7 325 69.2
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.2e-122 443.7 305 74.1
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 1.6e-122 443.4 299 74.2
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 2.1e-122 443.0 325 69.2
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 2.7e-122 442.6 325 69.8
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 2.7e-122 442.6 284 77.8
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 3.6e-122 442.2 299 74.2
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 3.6e-122 442.2 304 72.7
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 3.6e-122 442.2 304 72.7
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 3.6e-122 442.2 301 73.8
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 4.7e-122 441.8 324 69.1
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.7e-122 441.8 277 78.3
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 6.1e-122 441.4 277 78.0
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 8.0e-122 441.0 316 69.9
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 8.0e-122 441.0 321 67.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 1.0e-121 440.7 333 69.1
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.0e-121 440.7 300 73.7
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.4e-121 440.3 336 67.6
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 2.3e-121 439.5 304 72.4
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 2.3e-121 439.5 398 59.3
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 4.0e-121 438.7 277 77.6
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 4.0e-121 438.7 278 78.1
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 4.0e-121 438.7 304 72.0
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 4.0e-121 438.7 344 63.4
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 4.0e-121 438.7 307 72.6
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 6.8e-121 438.0 305 73.1
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 6.8e-121 438.0 325 69.2
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 8.8e-121 437.6 322 69.6
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 8.8e-121 437.6 318 69.5
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 1.2e-120 437.2 278 77.7
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.5e-120 436.8 343 64.7
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 2.0e-120 436.4 331 69.5
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.0e-120 436.4 304 72.7
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 3.4e-120 435.6 300 72.0
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 3.4e-120 435.6 291 73.5
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 4.4e-120 435.3 304 71.4
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 5.7e-120 434.9 278 77.3
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 9.8e-120 434.1 300 72.3
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 1.3e-119 433.7 300 73.0
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.2e-119 433.0 334 67.4
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.7e-119 432.2 272 75.7
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 3.7e-119 432.2 306 68.3
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 6.3e-119 431.4 272 77.9
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.8e-118 429.9 272 77.6
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 9.1e-118 427.6 337 64.7
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 2.7e-117 426.0 311 68.8
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 2.7e-117 426.0 265 78.9
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 5.0e-116 421.8 281 70.8
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 8.6e-116 421.0 281 74.0
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 3.6e-114 415.6 318 66.7
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 4.7e-114 415.2 285 75.8
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 6.1e-114 414.8 300 68.0
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 3.4e-112 409.1 321 65.1
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 2.2e-111 406.4 277 73.3
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.8e-110 403.3 285 69.1
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 4.1e-110 402.1 351 63.2
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 5.4e-110 401.7 313 62.9
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 7.0e-110 401.4 283 68.6
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 3.5e-109 399.1 296 68.6
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 4.6e-109 398.7 306 66.7
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 5.9e-109 398.3 338 62.1
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 8.6e-108 394.4 279 71.0
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 5.6e-107 391.7 300 66.3
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 4.0e-105 385.6 322 61.8
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 6.8e-105 384.8 292 65.1
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 5.8e-104 381.7 271 71.2
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 6.0e-101 371.7 301 64.8
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 5.0e-100 368.6 283 67.8
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 7.3e-99 364.8 275 64.4
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 5.8e-96 355.1 276 63.4
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 1.7e-92 343.6 303 56.1
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 6.8e-89 331.6 186 87.6
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 4.9e-87 325.5 253 67.6
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 3.1e-81 306.2 354 50.8
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 4.4e-80 302.4 300 51.7
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 4.6e-77 292.4 248 64.5
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.5e-75 287.3 291 55.0
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 2.1e-74 283.5 274 50.0
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.8e-74 282.3 212 69.3
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 8.1e-66 255.0 218 63.8
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 4.0e-65 252.7 174 76.4
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-64 251.1 239 59.4
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.3e-59 232.6 312 47.1
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.0e-57 226.1 224 57.6
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 1.0e-52 211.5 176 59.1
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.3e-52 211.1 173 63.0
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 4.8e-50 202.6 293 43.3
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 1.0e-47 194.9 175 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.8e-42 176.8 182 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 8.8e-36 155.2 138 59.4
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 4.3e-35 152.9 90 80.0
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.0e-32 144.1 285 34.0
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 7.7e-32 142.1 77 85.7
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 3.9e-28 129.8 75 85.3
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 4.8e-26 122.9 68 88.2
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.1e-22 111.7 89 64.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 4.2e-22 109.8 152 47.4
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.2e-21 108.2 164 41.5
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.3e-20 104.0 66 81.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.1e-14 85.1 83 53.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 4.4e-11 73.2 179 30.2
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 9.1e-09 65.5 81 45.7
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.2e-06 55.8 30 90.0


User provided reference genes

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