Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01976 Selenicereus undatus HOM05D001434 ORTHO05D004586 1.4e-116 422.9 208 100.0
Hund23230 Selenicereus undatus HOM05D001434 ORTHO05D004586 2.2e-77 292.7 208 68.3
EL10Ac4g07774 Beta vulgaris HOM05D001434 ORTHO05D004586 3.2e-73 278.9 211 66.8
Ah.04g166010 Amaranthus hybridus HOM05D001434 ORTHO05D004586 2.1e-72 276.2 209 65.1
AUR62015810 Chenopodium quinoa HOM05D001434 ORTHO05D004586 1.4e-71 273.5 209 64.1
Ah.06g182830 Amaranthus hybridus HOM05D001434 ORTHO05D004586 2.3e-71 272.7 208 63.9
RcHm_v2.0_Chr5g0040501 Rosa chinensis HOM05D001434 ORTHO05D004586 2.8e-64 249.2 212 59.4
FAN21G1927 Fragaria x ananassa HOM05D001434 ORTHO05D004586 5.7e-62 241.5 211 57.3
FvH4_3g23020 Fragaria vesca HOM05D001434 ORTHO05D004586 1.3e-61 240.4 211 57.3
MD03G1198400 Malus domestica HOM05D001434 ORTHO05D004586 2.8e-61 239.2 210 58.1
AUR62020408 Chenopodium quinoa HOM05D001434 ORTHO05D004586 6.3e-61 238.0 209 59.3
CSS0024501 Camellia sinensis var. sinensis HOM05D001434 ORTHO05D004586 2.4e-60 236.1 210 56.2
GSVIVG01037676001 Vitis vinifera HOM05D001434 ORTHO05D004586 4.1e-60 235.3 210 55.2
CiPaw.12G131400 Carya illinoinensis HOM05D001434 ORTHO05D004586 9.2e-60 234.2 210 58.1
FAN11G3048 Fragaria x ananassa HOM05D001434 ORTHO05D004586 2.7e-59 232.6 207 56.5
Dinv40771 Davidia involucrata HOM05D001434 ORTHO05D004586 3.5e-59 232.3 211 55.5
FAN25G2755 Fragaria x ananassa HOM05D001434 ORTHO05D004586 4.5e-59 231.9 206 56.8
Eucgr.F00743 Eucalyptus grandis HOM05D001434 ORTHO05D004586 1.3e-58 230.3 210 55.7
Sc03g0008500 Simmondsia chinensis HOM05D001434 ORTHO05D004586 1.7e-58 229.9 217 54.8
FAN16G0031 Fragaria x ananassa HOM05D001434 ORTHO05D004586 5.0e-58 228.4 207 56.5
Manes.15G070100 Manihot esculenta HOM05D001434 ORTHO05D004586 6.6e-58 228.0 211 57.3
MSTRG.12984 Avicennia marina HOM05D001434 ORTHO05D004586 1.9e-57 226.5 206 54.4
QL08p009425 Quercus lobata HOM05D001434 ORTHO05D004586 2.5e-57 226.1 209 53.6
Potri.011G089300 Populus trichocarpa HOM05D001434 ORTHO05D004586 5.6e-57 224.9 209 54.1
Cfa020319 Carpinus fangiana HOM05D001434 ORTHO05D004586 7.3e-57 224.6 210 54.8
Actinidia05085 Actinidia chinensis HOM05D001434 ORTHO05D004586 9.5e-57 224.2 209 53.1
Actinidia08340 Actinidia chinensis HOM05D001434 ORTHO05D004586 9.5e-57 224.2 209 53.1
Cpa.g.sc12.281 Carica papaya HOM05D001434 ORTHO05D004586 1.2e-56 223.8 210 53.8
CsaV3_3G004600 Cucumis sativus L. HOM05D001434 ORTHO05D004586 1.2e-56 223.8 210 51.9
vmacro02222 Vaccinium macrocarpon HOM05D001434 ORTHO05D004586 3.6e-56 222.2 234 51.3
TPR.G1225 Trifolium pratense HOM05D001434 ORTHO05D004586 1.4e-55 220.3 212 55.7
Nn1g03482 Nelumbo nucifera HOM05D001434 ORTHO05D004586 2.3e-55 219.5 210 54.3
Prupe.4G216600 Prunus persica HOM05D001434 ORTHO05D004586 3.1e-55 219.2 210 55.2
Rhsim06G0219000 Rhododendron simsii HOM05D001434 ORTHO05D004586 3.1e-55 219.2 239 49.8
TWI38G0863 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 3.1e-55 219.2 209 54.1
MELO3C014157.2 Cucumis melo HOM05D001434 ORTHO05D004586 4.0e-55 218.8 211 52.1
Nitab4.5_0000328g0030 Nicotiana tabacum HOM05D001434 ORTHO05D004586 4.0e-55 218.8 208 56.2
Nitab4.5_0002287g0060 Nicotiana tabacum HOM05D001434 ORTHO05D004586 4.0e-55 218.8 208 56.2
Sabra11G0093800 Salix brachista HOM05D001434 ORTHO05D004586 4.0e-55 218.8 209 52.2
TWI39G0476 Tripterygium wilfordii HOM05D001434 ORTHO05D004586 4.0e-55 218.8 209 54.5
Haze_09703 Corylus avellana HOM05D001434 ORTHO05D004586 1.2e-54 217.2 206 53.9
arahy.Tifrunner.gnm1.ann1.09LR4A Arachis hypogaea HOM05D001434 ORTHO05D004586 2.0e-54 216.5 207 54.6
CANSAT11G2500 Cannabis sativa HOM05D001434 ORTHO05D004586 2.0e-54 216.5 210 53.3
PSO541G5896 Papaver somniferum HOM05D001434 ORTHO05D004586 2.6e-54 216.1 191 54.5
BcaC04g20273 Brassica carinata HOM05D001434 ORTHO05D004586 4.4e-54 215.3 192 54.7
ClCG10G004950 Citrullus lanatus HOM05D001434 ORTHO05D004586 4.4e-54 215.3 210 50.5
MD11G1214500 Malus domestica HOM05D001434 ORTHO05D004586 4.4e-54 215.3 185 56.8
AT5G55060 Arabidopsis thaliana HOM05D001434 ORTHO05D004586 5.8e-54 214.9 195 56.9
BcaB08g35869 Brassica carinata HOM05D001434 ORTHO05D004586 5.8e-54 214.9 200 52.5
C09p45620 Brassica napus HOM05D001434 ORTHO05D004586 7.5e-54 214.5 192 54.7
BolC9t57432H Brassica oleracea HOM05D001434 ORTHO05D004586 7.5e-54 214.5 192 54.7
BraA10t43329Z Brassica rapa HOM05D001434 ORTHO05D004586 7.5e-54 214.5 192 54.7
Cc05_g13980 Coffea canephora HOM05D001434 ORTHO05D004586 7.5e-54 214.5 206 52.9
Manes.03G131600 Manihot esculenta HOM05D001434 ORTHO05D004586 7.5e-54 214.5 209 49.8
Thecc.07G033300 Theobroma cacao HOM05D001434 ORTHO05D004586 7.5e-54 214.5 215 54.0
A10p12360 Brassica napus HOM05D001434 ORTHO05D004586 9.8e-54 214.2 192 54.7
Sp6g17000 Schrenkiella parvula HOM05D001434 ORTHO05D004586 9.8e-54 214.2 194 57.2
arahy.Tifrunner.gnm1.ann1.0VB874 Arachis hypogaea HOM05D001434 ORTHO05D004586 1.3e-53 213.8 207 54.1
Lalb_Chr15g0081441 Lupinus albus HOM05D001434 ORTHO05D004586 1.7e-53 213.4 190 57.4
PGSC0003DMG400022311 Solanum tuberosum HOM05D001434 ORTHO05D004586 1.7e-53 213.4 208 54.8
Ca_06331_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 2.2e-53 213.0 210 52.9
Ca_30702_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 2.2e-53 213.0 210 52.9
CAN.G337.77 Capsicum annuum HOM05D001434 ORTHO05D004586 2.9e-53 212.6 208 55.3
Ca_14751_v3 Cicer arietinum L. HOM05D001434 ORTHO05D004586 2.9e-53 212.6 190 56.3
Duzib213G0248 Durio zibethinus HOM05D001434 ORTHO05D004586 2.9e-53 212.6 216 50.5
Sed0001205 Sechium edule HOM05D001434 ORTHO05D004586 3.7e-53 212.2 210 51.4
Medtr5g093230 Medicago truncatula HOM05D001434 ORTHO05D004586 8.3e-53 211.1 202 54.0
CARHR268410 Cardamine hirsuta HOM05D001434 ORTHO05D004586 1.4e-52 210.3 195 55.4
Migut.H01814 Erythranthe guttata HOM05D001434 ORTHO05D004586 1.4e-52 210.3 209 50.2
Sopen07g032940 Solanum pennellii HOM05D001434 ORTHO05D004586 1.4e-52 210.3 208 54.8
Solyc07g064740.3 Solanum lycopersicum HOM05D001434 ORTHO05D004586 1.9e-52 209.9 208 54.3
Peaxi162Scf00235g00421 Petunia axillaris HOM05D001434 ORTHO05D004586 2.4e-52 209.5 209 52.6
AL8G30560 Arabidopsis lyrata HOM05D001434 ORTHO05D004586 3.2e-52 209.1 195 55.4
Glyma.14G022300 Glycine max HOM05D001434 ORTHO05D004586 3.2e-52 209.1 209 53.1
Lj1A875G28 Lonicera japonica HOM05D001434 ORTHO05D004586 4.1e-52 208.8 197 54.8
Atru.chr2.3467 Acer truncatum HOM05D001434 ORTHO05D004586 7.0e-52 208.0 196 54.1
Atru.chr2.3480 Acer truncatum HOM05D001434 ORTHO05D004586 7.0e-52 208.0 196 54.1
Aqoxy1G03123 Aquilegia oxysepala HOM05D001434 ORTHO05D004586 9.2e-52 207.6 206 52.4
Ciclev10007601m.g Citrus clementina HOM05D001434 ORTHO05D004586 1.6e-51 206.8 192 52.6
SGA_v2.0_scaffold8G04338 Striga asiatica HOM05D001434 ORTHO05D004586 1.6e-51 206.8 212 49.1
CANSAT11G2014 Cannabis sativa HOM05D001434 ORTHO05D004586 2.7e-51 206.1 213 53.5
Thhalv10012904m.g Eutrema salsugineum HOM05D001434 ORTHO05D004586 4.6e-51 205.3 193 54.4
COL.COLO4_09683 Corchorus olitorius HOM05D001434 ORTHO05D004586 7.8e-51 204.5 214 51.4
THA.LOC104811616 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 7.8e-51 204.5 206 51.5
Aa31LG3G10990 Aethionema arabicum HOM05D001434 ORTHO05D004586 1.0e-50 204.1 193 54.4
Phvul.008G269100 Phaseolus vulgaris HOM05D001434 ORTHO05D004586 1.7e-50 203.4 210 51.9
Nn1g07173 Nelumbo nucifera HOM05D001434 ORTHO05D004586 3.9e-50 202.2 199 51.8
Glyma.02G292300 Glycine max HOM05D001434 ORTHO05D004586 5.0e-50 201.8 210 51.0
VMungo0647G2168 Vigna mungo HOM05D001434 ORTHO05D004586 5.0e-50 201.8 194 54.1
DCAR_016715 Daucus carota HOM05D001434 ORTHO05D004586 1.9e-49 199.9 207 47.8
BolC2t07748H Brassica oleracea HOM05D001434 ORTHO05D004586 2.5e-49 199.5 194 53.6
Glyma.08G319100 Glycine max HOM05D001434 ORTHO05D004586 2.5e-49 199.5 199 50.8
THA.LOC104817673 Tarenaya hassleriana HOM05D001434 ORTHO05D004586 2.5e-49 199.5 198 51.0
Glyma.18G094400 Glycine max HOM05D001434 ORTHO05D004586 9.5e-49 197.6 199 51.3
Carub.0008s1533 Capsella rubella HOM05D001434 ORTHO05D004586 1.2e-48 197.2 195 53.8
Medtr3g052790 Medicago truncatula HOM05D001434 ORTHO05D004586 1.2e-48 197.2 190 53.7
Oeu034037.1 Olea europaea HOM05D001434 ORTHO05D004586 3.6e-48 195.7 223 46.6
Gorai.002G090300 Gossypium raimondii HOM05D001434 ORTHO05D004586 6.2e-48 194.9 215 48.8
ECA246G3933 Erigeron canadensis HOM05D001434 ORTHO05D004586 8.0e-48 194.5 210 46.7
Gohir.D01G068300 Gossypium hirsutum HOM05D001434 ORTHO05D004586 1.8e-47 193.4 215 48.4
Gohir.D05G372500 Gossypium hirsutum HOM05D001434 ORTHO05D004586 8.9e-47 191.0 220 46.8
Gorai.009G440800 Gossypium raimondii HOM05D001434 ORTHO05D004586 8.9e-47 191.0 220 46.8
arahy.Tifrunner.gnm1.ann1.MF778S Arachis hypogaea HOM05D001434 ORTHO05D004586 1.5e-46 190.3 207 50.7
arahy.Tifrunner.gnm1.ann1.QFUU5V Arachis hypogaea HOM05D001434 ORTHO05D004586 1.5e-46 190.3 207 50.7
Lj6g0020939 Lotus japonicus HOM05D001434 ORTHO05D004586 5.8e-46 188.3 211 48.3
PSO675G6219 Papaver somniferum HOM05D001434 ORTHO05D004586 5.8e-46 188.3 157 58.6
Psat0s3384g0040 Pisum sativum HOM05D001434 ORTHO05D004586 7.5e-46 188.0 153 57.5
Psat5g174680 Pisum sativum HOM05D001434 ORTHO05D004586 7.5e-46 188.0 204 49.0
Lalb_Chr17g0348531 Lupinus albus HOM05D001434 ORTHO05D004586 9.8e-46 187.6 201 49.3
C02p16470 Brassica napus HOM05D001434 ORTHO05D004586 3.7e-45 185.7 187 53.5
VMungo0540G0244 Vigna mungo HOM05D001434 ORTHO05D004586 3.7e-45 185.7 220 47.7
HanXRQChr05g0159431 Helianthus annuus HOM05D001434 ORTHO05D004586 4.9e-45 185.3 208 44.7
Phvul.006G046200 Phaseolus vulgaris HOM05D001434 ORTHO05D004586 8.3e-45 184.5 221 48.0
Sed0002781 Sechium edule HOM05D001434 ORTHO05D004586 2.4e-44 183.0 140 58.6
MBI02_g25402_MAGBIO Magnolia biondii HOM05D001434 ORTHO05D004586 1.2e-43 180.6 210 45.2
PGR031G3770 Punica granatum HOM05D001434 ORTHO05D004586 2.7e-43 179.5 195 52.3
Lalb_Chr04g0248331 Lupinus albus HOM05D001434 ORTHO05D004586 3.5e-43 179.1 147 57.8
C03p16670 Brassica napus HOM05D001434 ORTHO05D004586 6.0e-43 178.3 169 53.8
BcaC01g06341 Brassica carinata HOM05D001434 ORTHO05D004586 1.0e-42 177.6 169 53.3
BolC3t14087H Brassica oleracea HOM05D001434 ORTHO05D004586 1.0e-42 177.6 169 53.3
A03p14290 Brassica napus HOM05D001434 ORTHO05D004586 1.7e-42 176.8 169 52.7
Lsat_1_v5_gn_7_110060 Lactuca sativa HOM05D001434 ORTHO05D004586 1.7e-42 176.8 195 46.7
BraA03t10726Z Brassica rapa HOM05D001434 ORTHO05D004586 3.9e-42 175.6 169 52.1
HanXRQChr11g0336391 Helianthus annuus HOM05D001434 ORTHO05D004586 1.6e-40 170.2 190 46.8
unitig_578.g16279 Utricularia gibba HOM05D001434 ORTHO05D008999 6.2e-40 168.3 222 41.4
BcaC03g14270 Brassica carinata HOM05D001434 ORTHO05D004586 1.8e-39 166.8 124 62.9
Lsat_1_v5_gn_5_2920 Lactuca sativa HOM05D001434 ORTHO05D004586 6.8e-39 164.9 201 44.8
ATR0794G053 Amborella trichopoda HOM05D001434 ORTHO05D004586 8.9e-39 164.5 211 44.1
HPP92_012415 Vanilla planifolia HOM05D001434 ORTHO05D004586 2.0e-38 163.3 193 44.6
ECA236G1274 Erigeron canadensis HOM05D001434 ORTHO05D004586 1.1e-36 157.5 195 43.1
A02p09920 Brassica napus HOM05D001434 ORTHO05D004586 6.0e-35 151.8 195 45.6
BraA02t06056Z Brassica rapa HOM05D001434 ORTHO05D004586 6.0e-35 151.8 195 45.6
CDE05G0747 Ceratophyllum demersum HOM05D001434 ORTHO05D004586 6.6e-34 148.3 189 42.9
Os07g0511000 Oryza sativa ssp. japonica HOM05D001434 ORTHO05D004586 2.5e-33 146.4 219 37.9
TAR624G0691 Trochodendron aralioides HOM05D001434 ORTHO05D004586 2.0e-30 136.7 99 60.6
Pp3c20_12230 Physcomitrium patens HOM05D001434 ORTHO05D004586 1.1e-25 120.9 218 36.2
TPR.G39743 Trifolium pratense HOM05D001434 ORTHO05D004586 3.6e-24 115.9 170 40.0
Mapoly0021s0054 Marchantia polymorpha HOM05D001434 ORTHO05D004586 9.0e-23 111.3 218 32.1
SMO358G0516 Selaginella moellendorffii HOM05D001434 ORTHO05D004586 9.0e-23 111.3 118 44.1
AagrBONN_evm.TU.Sc2ySwM_228.3056 Anthoceros agrestis HOM05D001434 ORTHO05D004586 1.2e-22 110.9 151 40.4
CBR_g52387 Chara braunii HOM05D001434 ORTHO05D004586 1.2e-22 110.9 118 46.6
Pp3c23_10600 Physcomitrium patens HOM05D001434 ORTHO05D004586 7.6e-22 108.2 135 40.7
Pp3c24_7080 Physcomitrium patens HOM05D001434 ORTHO05D004586 2.9e-21 106.3 221 32.6
Actinidia32254 Actinidia chinensis HOM05D001434 ORTHO05D004586 9.3e-20 101.3 64 76.6
Sc16g0005900 Simmondsia chinensis HOM05D001434 ORTHO05D004586 5.6e-17 92.0 57 75.4
TPR.G33786 Trifolium pratense HOM05D001434 ORTHO05D004586 6.2e-16 88.6 60 66.7
Actinidia32255 Actinidia chinensis HOM05D001434 ORTHO05D004586 3.4e-14 82.8 97 43.3
QL08p009391 Quercus lobata HOM05D001434 ORTHO05D004586 3.4e-14 82.8 99 41.4
SEGI_32065 Sequoiadendron giganteum HOM05D001434 ORTHO05D004586 9.3e-12 74.7 193 30.6
LjContig00272g0017225 Lotus japonicus HOM05D001434 ORTHO05D004586 5.6e-09 65.5 33 87.9
ECA246G1562 Erigeron canadensis HOM05D005459 ORTHO05D006751 2.1e-08 63.5 72 41.7
CAN.G48.43 Capsicum annuum HOM05D001529 ORTHO05D014553 3.7e-08 62.8 44 59.1
Gohir.A04G013800 Gossypium hirsutum HOM05D001434 ORTHO05D004586 3.7e-08 62.8 33 78.8
PRCOL_00007277 Prasinoderma coloniale HOM05D001434 ORTHO05D004586 3.7e-08 62.8 121 28.9
Dinv22250 Davidia involucrata HOM05D001434 ORTHO05D004586 4.8e-08 62.4 33 78.8
Gohir.A01G081200 Gossypium hirsutum HOM05D001434 ORTHO05D004586 1.1e-07 61.2 33 75.8


User provided reference genes

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