Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 7.8e-269 929.9 466 100.0
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.1e-235 819.7 500 83.2
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 8.3e-202 707.2 491 72.7
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 1.4e-201 706.4 489 73.2
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.2e-197 693.3 489 70.3
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.1e-197 692.6 490 69.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.4e-196 689.9 490 69.4
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.8e-196 689.5 489 70.1
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.8e-196 689.5 485 70.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.0e-196 688.7 494 69.2
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 5.2e-196 688.0 494 69.4
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 6.8e-196 687.6 489 69.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 8.9e-196 687.2 494 69.0
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.2e-195 686.8 490 69.0
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.0e-195 686.0 494 68.8
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 4.4e-195 684.9 494 69.8
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 5.7e-195 684.5 489 70.1
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 9.8e-195 683.7 489 68.7
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.7e-194 682.9 481 71.3
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 3.7e-194 681.8 477 69.6
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 3.7e-194 681.8 477 69.6
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.9e-194 681.4 490 69.8
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 6.3e-194 681.0 486 70.6
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.4e-193 679.1 488 69.3
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 7.0e-193 677.6 491 68.6
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 9.2e-193 677.2 484 70.0
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.6e-192 676.4 486 68.5
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.0e-192 676.0 484 69.2
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-192 675.6 488 69.1
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 3.5e-192 675.2 488 70.1
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.8e-192 674.1 488 68.9
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.0e-191 673.7 485 68.7
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.0e-191 673.7 487 69.6
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.0e-191 673.7 492 67.5
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-191 673.3 487 68.8
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 1.3e-191 673.3 485 67.8
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.7e-191 672.9 568 64.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 1.7e-191 672.9 480 68.3
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.7e-191 672.9 480 68.3
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 2.3e-191 672.5 485 68.0
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.6e-189 666.4 481 68.8
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.8e-189 665.6 485 68.7
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.6e-189 665.2 485 68.5
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-188 663.3 485 68.5
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 2.3e-188 662.5 484 68.8
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 4.0e-188 661.8 489 67.3
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 4.0e-188 661.8 492 66.5
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.2e-188 661.4 485 67.6
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 8.9e-188 660.6 486 67.3
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.2e-187 660.2 492 68.1
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.5e-187 659.8 585 61.2
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.5e-187 659.8 488 68.0
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 2.0e-187 659.4 486 67.1
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.0e-187 659.4 482 68.7
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.6e-187 659.1 474 69.2
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 3.4e-187 658.7 486 67.3
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 5.8e-187 657.9 489 66.7
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 5.8e-187 657.9 489 66.7
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 5.8e-187 657.9 481 68.4
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 7.5e-187 657.5 477 69.2
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 2.2e-186 656.0 486 68.1
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.2e-186 656.0 483 66.5
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.9e-186 655.6 490 66.7
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.9e-186 655.6 481 67.6
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.9e-186 654.8 486 67.1
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 8.3e-186 654.1 477 68.3
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.4e-185 653.3 489 67.5
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 1.9e-185 652.9 487 67.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.9e-185 652.9 487 67.1
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 3.2e-185 652.1 485 67.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 4.1e-185 651.7 488 67.6
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 9.2e-185 650.6 486 66.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 9.2e-185 650.6 485 67.4
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 9.2e-185 650.6 486 66.5
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.2e-184 650.2 486 66.3
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.6e-184 649.8 484 66.7
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.0e-184 649.4 486 66.9
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.0e-184 649.4 486 66.9
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.0e-184 649.4 474 67.3
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-184 649.0 500 65.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.5e-184 648.7 486 66.7
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.6e-184 648.3 486 66.0
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 6.0e-184 647.9 486 65.6
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 6.0e-184 647.9 511 65.4
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 3.9e-183 645.2 484 66.5
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.0e-183 644.8 481 67.2
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 8.6e-183 644.0 485 67.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-182 643.7 486 67.7
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.5e-182 643.3 489 65.8
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.5e-182 643.3 489 65.8
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.5e-182 643.3 486 66.5
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.9e-182 642.9 497 64.6
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.5e-182 642.5 483 65.6
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 5.6e-182 641.3 485 65.4
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 9.5e-182 640.6 488 66.2
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.2e-181 640.2 478 68.0
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.8e-181 639.0 473 68.3
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 4.7e-181 638.3 530 62.3
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 6.2e-181 637.9 489 65.4
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.4e-180 636.7 485 64.5
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 3.1e-180 635.6 494 64.4
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 9.8e-179 630.6 461 69.2
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 3.2e-177 625.5 490 64.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.0e-175 620.5 485 63.5
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 1.7e-175 619.8 527 62.0
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.3e-175 619.4 488 63.1
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 1.1e-174 617.1 492 62.6
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.5e-174 616.7 456 68.2
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.8e-173 612.5 476 64.5
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 9.9e-171 604.0 489 64.4
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.7e-170 603.2 486 62.8
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 4.1e-169 598.6 492 62.4
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 4.6e-168 595.1 522 59.4
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 9.6e-166 587.4 485 61.9
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.6e-165 586.6 456 63.4
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 5.2e-164 581.6 487 61.2
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 5.2e-164 581.6 483 60.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 7.1e-161 571.2 496 57.7
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.6e-160 570.1 489 60.5
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 3.5e-160 568.9 488 61.1
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 3.9e-159 565.5 501 56.7
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.1e-159 565.1 479 59.5
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 7.3e-158 561.2 371 76.0
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 4.9e-154 548.5 490 58.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.1e-149 533.1 501 58.3
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.8e-148 530.0 396 66.4
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 3.2e-145 519.2 529 51.4
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 4.6e-144 515.4 452 57.1
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 9.0e-140 501.1 492 53.0
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 5.0e-130 468.8 379 64.4
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.9e-129 466.8 392 61.5
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.3e-126 455.7 392 62.8
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.3e-126 455.7 342 66.7
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.8e-124 450.3 358 64.2
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.9e-121 440.3 357 63.0
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.2e-121 439.5 545 46.4
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.2e-120 437.6 362 62.4
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 7.4e-118 428.3 375 59.7
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 4.4e-110 402.5 466 47.6
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.5e-107 392.5 392 55.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.5e-105 385.6 303 63.7
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 4.7e-104 382.5 358 55.9
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.6e-99 367.5 267 67.8
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.8e-95 352.1 280 63.6
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.1e-89 334.7 275 62.2
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.3e-79 300.4 186 75.8
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.2e-72 278.1 454 36.6
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.7e-72 276.2 179 74.9
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.0e-66 256.9 233 55.8
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 2.4e-60 237.3 247 56.3
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.2e-51 208.4 144 71.5
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 2.7e-51 207.2 132 75.0
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.5e-51 206.8 126 80.2
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.3e-50 204.9 226 53.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 3.0e-50 203.8 238 46.2
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 5.1e-50 203.0 195 54.4
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.5e-49 201.4 132 75.8
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 9.9e-46 188.7 150 66.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 3.5e-43 180.3 245 41.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.3e-40 171.8 113 71.7
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 9.9e-38 162.2 120 65.0
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.3e-37 161.8 92 78.3
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.3e-37 161.8 92 78.3
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 8.4e-37 159.1 113 69.0
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 8.7e-34 149.1 207 41.1
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.7e-27 127.5 258 37.6
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 3.7e-24 117.1 77 74.0
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 9.0e-23 112.5 64 81.2
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 2.2e-21 107.8 62 79.0
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 8.4e-21 105.9 67 73.1
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 8.4e-21 105.9 99 56.6
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 8.4e-21 105.9 92 57.6
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.0e-19 99.8 65 72.3
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 7.9e-19 99.4 67 70.1
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.1e-18 96.7 65 69.2
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.5e-17 95.1 65 67.7
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 1.6e-16 91.7 181 36.5
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.1e-16 91.3 65 70.8
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.4e-15 87.8 77 59.7
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.0e-10 72.4 46 67.4


User provided reference genes

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