Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.9e-245 852.0 433 100.0
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.6e-64 250.4 379 45.1
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 2.0e-61 240.7 445 37.5
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 3.0e-57 226.9 489 34.6
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 1.1e-54 218.4 434 35.9
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 9.5e-51 205.3 448 35.5
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 6.4e-47 192.6 464 33.2
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 1.9e-46 191.0 452 32.3
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 4.1e-46 189.9 438 33.1
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 4.1e-46 189.9 454 32.6
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 1.6e-45 188.0 446 33.2
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 4.6e-45 186.4 339 37.2
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 4.6e-45 186.4 458 33.2
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 7.8e-45 185.7 500 31.6
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 7.8e-45 185.7 451 32.2
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 2.3e-44 184.1 458 33.2
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.3e-44 184.1 458 33.2
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 8.6e-44 182.2 463 31.5
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 1.1e-43 181.8 448 32.8
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.5e-43 181.4 458 32.5
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 3.3e-43 180.3 472 32.6
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 7.3e-43 179.1 470 32.1
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.2e-42 178.3 464 31.7
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 3.6e-42 176.8 458 31.9
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 4.7e-42 176.4 490 29.4
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 4.7e-42 176.4 443 32.7
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.1e-41 175.3 470 31.5
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 1.8e-41 174.5 452 31.4
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 2.3e-41 174.1 526 29.5
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 6.8e-41 172.6 455 31.6
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 3.4e-40 170.2 495 29.5
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 5.8e-40 169.5 464 29.7
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 7.5e-40 169.1 450 30.2
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 7.5e-40 169.1 460 32.0
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 4.9e-39 166.4 288 38.9
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 4.9e-39 166.4 451 30.6
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 6.4e-39 166.0 455 29.7
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 2.4e-38 164.1 457 30.4
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 2.4e-38 164.1 504 28.6
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 3.2e-38 163.7 458 29.7
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 4.1e-38 163.3 393 31.8
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 4.1e-38 163.3 406 31.8
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 5.4e-38 162.9 474 30.6
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 7.1e-38 162.5 458 29.9
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 9.2e-38 162.2 458 29.7
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 1.2e-37 161.8 449 28.7
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 3.5e-37 160.2 495 29.9
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 4.6e-37 159.8 502 28.7
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 4.6e-37 159.8 473 30.2
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 6.0e-37 159.5 466 30.9
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 1.0e-36 158.7 475 30.1
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 1.3e-36 158.3 454 30.6
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 2.3e-36 157.5 432 30.8
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 2.3e-36 157.5 265 43.0
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 3.0e-36 157.1 443 31.2
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 3.0e-36 157.1 481 28.7
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 3.0e-36 157.1 451 30.6
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 6.6e-36 156.0 334 34.4
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 1.1e-35 155.2 473 29.8
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 5.6e-35 152.9 510 27.5
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 5.6e-35 152.9 486 29.8
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 1.2e-34 151.8 503 27.8
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 1.2e-34 151.8 453 30.5
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 2.1e-34 151.0 480 27.5
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 2.1e-34 151.0 461 29.1
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 2.8e-34 150.6 497 30.2
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 2.8e-34 150.6 376 30.9
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 4.7e-34 149.8 470 28.5
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 6.2e-34 149.4 342 33.3
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 6.2e-34 149.4 510 27.1
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 1.1e-33 148.7 464 28.9
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.4e-33 148.3 354 31.9
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 6.8e-33 146.0 467 28.7
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 8.9e-33 145.6 463 29.6
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 1.2e-32 145.2 463 28.5
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 4.4e-32 143.3 493 27.4
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 7.6e-32 142.5 504 28.2
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 7.6e-32 142.5 334 31.7
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 7.6e-32 142.5 484 28.9
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 1.4e-30 138.3 475 28.0
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 3.2e-30 137.1 446 28.5
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 5.4e-30 136.3 457 26.9
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 7.1e-30 136.0 487 26.7
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 1.2e-29 135.2 508 27.6
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 2.1e-29 134.4 477 28.7
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 3.0e-28 130.6 481 26.6
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 3.0e-28 130.6 491 26.9
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 6.6e-28 129.4 290 33.8
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 8.6e-28 129.0 344 30.5
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 1.1e-27 128.6 337 30.6
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 1.5e-27 128.3 454 29.7
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 7.3e-27 125.9 498 27.1
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 7.3e-27 125.9 489 25.6
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 1.1e-25 122.1 244 36.9
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 2.0e-24 117.9 478 26.4
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 2.2e-23 114.4 100 59.0
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 2.4e-22 110.9 205 37.1
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 1.6e-21 108.2 221 33.5
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 1.7e-20 104.8 489 24.9
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 5.1e-20 103.2 100 53.0
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 4.3e-19 100.1 436 25.5
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.3e-18 98.6 339 26.0
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 2.1e-18 97.8 67 68.7
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 2.1e-18 97.8 87 52.9
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 2.8e-18 97.4 339 24.8
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 1.5e-16 91.7 81 51.9
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 2.0e-16 91.3 473 24.7
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 7.6e-16 89.4 89 52.8
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 1.3e-15 88.6 231 32.9
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 2.2e-15 87.8 67 56.7
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 4.9e-15 86.7 100 48.0
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 1.1e-14 85.5 84 52.4
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 3.2e-14 84.0 182 33.0
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 5.4e-14 83.2 83 45.8
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 3.0e-12 77.4 147 33.3
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 6.6e-12 76.3 89 46.1
unitig_22.g5995 Utricularia gibba HOM05D001557 ORTHO05D001299 6.9e-09 66.2 218 27.5
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 2.0e-08 64.7 309 23.3
Aa31LG2G7340 Aethionema arabicum HOM05D001557 ORTHO05D001299 4.5e-08 63.5 191 27.7
Eucgr.G00475 Eucalyptus grandis HOM05D001557 ORTHO05D001299 8.4e-07 59.3 192 27.6
CBR_g19873 Chara braunii HOM05D003384 ORTHO05D005024 1.9e-06 58.2 214 26.6
PSO013G0284 Papaver somniferum HOM05D001557 ORTHO05D001299 1.9e-06 58.2 217 26.3
Sabra04G0100100 Salix brachista HOM05D001557 ORTHO05D001299 2.4e-06 57.8 202 28.2
HPP92_001099 Vanilla planifolia HOM05D001557 ORTHO05D001299 2.4e-06 57.8 231 26.0
CiPaw.05G060800 Carya illinoinensis HOM05D001557 ORTHO05D001299 3.2e-06 57.4 163 28.8
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 3.2e-06 57.4 84 33.3
Potri.010G167400 Populus trichocarpa HOM05D001557 ORTHO05D001299 3.2e-06 57.4 156 28.2
Lalb_Chr03g0040671 Lupinus albus HOM05D001557 ORTHO05D001299 4.2e-06 57.0 152 29.6
Sabra10G0127200 Salix brachista HOM05D001557 ORTHO05D001299 4.2e-06 57.0 156 27.6
Manes.17G101300 Manihot esculenta HOM05D005605 ORTHO05D007615 7.1e-06 56.2 185 25.4
Phvul.009G213100 Phaseolus vulgaris HOM05D001557 ORTHO05D001299 7.1e-06 56.2 167 27.5
Sed0016619 Sechium edule HOM05D001557 ORTHO05D001299 7.1e-06 56.2 260 22.3
Thecc.05G101300 Theobroma cacao HOM05D001557 ORTHO05D001299 7.1e-06 56.2 179 28.5
Medtr7g081270 Medicago truncatula HOM05D001557 ORTHO05D001299 9.3e-06 55.8 181 28.7
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 9.3e-06 55.8 236 25.0


User provided reference genes

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