Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 9.0e-190 666.8 340 100.0
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 3.5e-141 505.4 340 74.7
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 8.9e-129 464.2 336 69.3
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.2e-127 459.5 339 68.7
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.0e-124 449.1 339 66.4
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 6.6e-124 448.0 339 66.1
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 9.5e-123 444.1 339 65.5
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 2.1e-117 426.4 335 64.2
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 4.6e-109 398.7 340 60.9
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.8e-105 386.7 338 58.9
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 4.0e-105 385.6 341 60.7
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 2.0e-104 383.3 341 59.2
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 2.6e-104 382.9 341 60.1
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.7e-103 380.2 340 58.2
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 8.4e-103 377.9 341 59.8
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.1e-102 377.5 341 60.7
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.1e-102 377.5 340 60.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 9.3e-102 374.4 339 59.0
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 6.6e-100 368.2 338 57.4
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.9e-99 366.7 339 56.3
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.5e-99 366.3 341 58.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.5e-99 366.3 341 58.1
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 4.3e-99 365.5 340 56.2
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 5.6e-99 365.2 340 55.3
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 7.3e-99 364.8 341 58.4
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.6e-98 363.6 340 58.5
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 1.4e-97 360.5 340 57.6
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.8e-97 360.1 339 57.8
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 3.1e-97 359.4 338 55.6
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 5.3e-97 358.6 341 56.6
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 6.9e-97 358.2 342 58.5
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.2e-96 357.5 341 56.3
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 2.6e-96 356.3 340 55.9
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 4.5e-96 355.5 340 55.3
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 7.6e-96 354.8 340 57.4
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 9.9e-96 354.4 340 53.5
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.7e-95 353.6 339 56.3
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.2e-95 353.2 337 56.1
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 2.9e-95 352.8 341 57.8
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 3.8e-95 352.4 342 55.6
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 4.9e-95 352.1 335 56.7
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 2.4e-94 349.7 340 55.6
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 2.4e-94 349.7 340 55.6
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 2.4e-94 349.7 337 56.1
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.1e-94 348.2 337 55.2
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 7.1e-94 348.2 340 54.1
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 3.5e-93 345.9 337 55.2
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.0e-92 344.4 334 56.3
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.8e-92 343.6 338 54.4
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-91 340.9 338 54.1
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.3e-90 337.4 339 54.0
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.6e-90 337.0 337 53.7
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 4.8e-90 335.5 338 54.1
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 4.8e-90 335.5 338 53.6
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.1e-89 334.3 340 52.9
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 1.1e-89 334.3 335 55.5
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.4e-89 334.0 342 55.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.1e-89 332.8 342 52.9
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 7.6e-88 328.2 344 52.9
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.7e-87 327.0 337 53.4
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 6.5e-87 325.1 345 52.8
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 1.4e-86 323.9 347 53.3
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.9e-86 323.6 330 53.0
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 9.3e-86 321.2 330 53.0
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.1e-85 320.1 328 52.4
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.6e-85 318.9 345 52.5
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 6.0e-85 318.5 340 51.8
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 7.9e-85 318.2 343 52.8
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 2.3e-84 316.6 339 51.6
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.0e-84 316.2 397 46.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 5.1e-84 315.5 330 51.5
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 5.1e-84 315.5 339 51.6
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.9e-83 313.5 344 50.0
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 2.5e-83 313.2 369 48.2
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 5.7e-83 312.0 342 52.3
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 7.4e-83 311.6 277 56.0
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 7.4e-83 311.6 340 51.5
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 9.6e-83 311.2 278 57.2
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 4.8e-82 308.9 328 50.6
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 8.2e-82 308.1 344 50.6
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.1e-81 307.8 341 50.7
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.1e-81 307.8 342 50.6
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 1.4e-81 307.4 340 51.8
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.4e-81 307.4 331 52.3
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 3.1e-81 306.2 363 50.1
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 4.1e-81 305.8 343 50.4
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 6.9e-81 305.1 336 50.0
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.2e-80 304.3 348 51.4
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 2.6e-80 303.1 344 50.9
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 1.7e-79 300.4 343 51.0
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 1.7e-79 300.4 343 51.0
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 1.7e-79 300.4 343 51.0
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 2.2e-79 300.1 344 50.3
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.2e-79 300.1 279 54.5
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 5.0e-79 298.9 341 50.7
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 5.0e-79 298.9 344 50.3
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 2.1e-77 293.5 340 48.5
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 1.8e-76 290.4 342 48.8
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 3.0e-76 289.7 342 48.0
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 3.0e-76 289.7 342 48.0
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 3.0e-76 289.7 337 47.8
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 3.9e-76 289.3 285 51.2
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.5e-75 287.3 342 48.2
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 4.3e-75 285.8 348 48.3
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 2.2e-74 283.5 342 47.4
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.2e-74 283.5 337 48.7
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.8e-74 283.1 384 45.3
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 5.3e-73 278.9 349 47.9
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-72 277.7 342 48.0
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 4.5e-72 275.8 343 47.8
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 4.5e-72 275.8 340 45.9
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 7.7e-72 275.0 337 47.8
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.0e-71 274.6 332 48.8
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 5.0e-71 272.3 351 47.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 8.5e-71 271.6 339 49.3
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 8.5e-71 271.6 336 48.5
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 8.5e-71 271.6 218 61.9
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 1.9e-70 270.4 350 46.3
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.9e-70 270.4 350 46.3
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 1.9e-70 270.4 320 49.7
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 3.2e-70 269.6 256 59.8
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.2e-70 269.2 345 46.4
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 4.2e-70 269.2 338 47.0
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.3e-68 263.5 379 43.8
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 5.1e-68 262.3 343 47.8
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 1.1e-67 261.2 243 56.0
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 2.5e-67 260.0 338 45.9
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.1e-65 254.6 343 44.6
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 1.4e-65 254.2 263 53.6
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.5e-64 250.8 343 46.6
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.2e-62 242.7 331 46.5
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.5e-62 242.3 339 44.5
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 3.9e-60 236.1 322 43.2
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 9.1e-57 224.9 303 42.9
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.3e-55 221.1 328 42.4
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 5.0e-55 219.2 342 42.7
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 1.2e-53 214.5 315 45.7
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.7e-53 213.4 338 42.0
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 3.6e-53 213.0 338 39.1
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 8.8e-52 208.4 160 61.2
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.8e-50 203.4 160 61.9
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 2.8e-50 203.4 241 48.1
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 3.7e-50 203.0 246 45.1
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 6.3e-50 202.2 164 59.1
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 1.2e-48 198.0 323 39.3
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-45 188.0 204 52.9
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.2e-45 188.0 204 52.9
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.1e-45 187.2 204 52.9
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 2.1e-45 187.2 340 38.2
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 3.6e-45 186.4 226 50.9
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.5e-40 169.9 149 56.4
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-38 164.9 171 54.4
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 8.8e-36 155.2 127 59.8
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.8e-34 150.2 211 46.9
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-33 148.3 129 55.0
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 7.0e-33 145.6 180 48.9
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 3.3e-30 136.7 216 43.5
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 4.9e-26 122.9 122 49.2
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 7.0e-25 119.0 158 46.2
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 8.6e-23 112.1 133 48.9
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 1.9e-22 110.9 225 36.0
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 3.6e-21 106.7 146 41.8
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 1.4e-20 104.8 99 50.5
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 1.8e-20 104.4 98 51.0
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 8.6e-15 85.5 141 37.6
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.7e-13 79.7 91 47.3
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 2.0e-11 74.3 63 52.4
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 7.8e-08 62.4 233 27.9
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 1.3e-07 61.6 62 56.5
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.0e-07 60.5 139 30.2
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 1.9e-06 57.8 66 45.5


User provided reference genes

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