Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.4e-173 612.8 304 100.0
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.9e-94 349.4 310 60.0
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.1e-90 337.4 305 60.0
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.1e-88 330.9 316 55.7
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.1e-82 310.8 263 62.0
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.7e-78 297.0 309 51.5
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.9e-77 293.5 318 51.3
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 1.2e-76 290.8 314 51.3
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 7.8e-76 288.1 307 50.8
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 7.8e-76 288.1 310 50.6
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 7.8e-76 288.1 311 49.5
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 3.0e-75 286.2 316 48.4
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 3.9e-75 285.8 314 49.7
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 6.6e-75 285.0 323 48.0
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 8.6e-75 284.6 282 53.9
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.5e-74 283.9 314 49.4
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 5.6e-74 282.0 314 48.1
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.2e-73 280.8 309 49.5
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.2e-73 280.8 309 49.2
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 2.8e-73 279.6 315 48.9
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 2.8e-73 279.6 310 49.7
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 8.1e-73 278.1 307 50.5
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 8.1e-73 278.1 304 48.0
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.1e-72 277.7 314 48.4
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 3.1e-72 276.2 304 48.7
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 3.1e-72 276.2 318 47.2
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 5.2e-72 275.4 316 48.1
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 5.2e-72 275.4 316 48.1
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 5.2e-72 275.4 308 49.0
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 8.9e-72 274.6 328 49.1
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 3.4e-71 272.7 315 45.7
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 3.4e-71 272.7 314 47.8
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 7.6e-71 271.6 284 50.7
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 7.6e-71 271.6 311 46.9
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 9.9e-71 271.2 306 50.0
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.7e-70 270.4 315 46.0
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 2.2e-70 270.0 346 45.4
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.1e-69 267.7 296 50.0
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.9e-69 266.9 308 47.4
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.2e-69 266.2 315 47.9
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 3.2e-69 266.2 316 45.6
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 4.2e-69 265.8 318 47.2
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 9.3e-69 264.6 297 47.5
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.6e-68 263.8 315 47.9
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.1e-68 263.5 315 47.3
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.7e-68 263.1 258 55.8
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 3.5e-68 262.7 310 45.8
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 7.8e-68 261.5 315 47.3
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 7.8e-68 261.5 294 46.9
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.3e-67 260.8 313 47.3
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.3e-67 260.0 307 46.9
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 3.9e-67 259.2 313 45.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 8.7e-67 258.1 310 44.5
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 8.7e-67 258.1 305 45.2
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.1e-66 257.7 305 45.6
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.5e-66 257.3 300 46.0
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 1.9e-66 256.9 310 47.1
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 4.3e-66 255.8 310 47.1
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 7.3e-66 255.0 297 46.5
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.6e-65 253.8 306 47.7
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 2.1e-65 253.4 318 46.9
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.1e-65 253.4 304 43.8
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 3.6e-65 252.7 319 43.6
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 3.6e-65 252.7 276 49.3
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 8.1e-65 251.5 288 47.9
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 5.3e-64 248.8 285 48.1
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 5.3e-64 248.8 311 46.3
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 1.5e-63 247.3 288 47.2
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.5e-63 247.3 286 47.6
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.5e-63 247.3 286 47.6
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.5e-63 247.3 288 46.5
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 2.6e-63 246.5 294 46.6
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 5.8e-63 245.4 372 40.6
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.3e-62 244.2 279 48.0
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.3e-62 244.2 343 42.9
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.7e-62 243.8 300 46.7
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 6.4e-62 241.9 269 48.7
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 8.4e-62 241.5 307 43.0
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.4e-61 240.7 282 47.5
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.9e-61 240.4 278 48.9
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 4.2e-61 239.2 291 45.7
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 7.1e-61 238.4 284 46.5
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 2.1e-60 236.9 301 42.5
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 3.5e-60 236.1 301 43.5
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 3.5e-60 236.1 301 43.5
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 6.0e-60 235.3 260 46.2
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.7e-59 233.8 298 45.0
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 4.3e-58 229.2 293 42.7
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.1e-57 226.9 264 48.1
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 2.8e-57 226.5 287 42.5
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 6.2e-57 225.3 282 46.5
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.4e-56 224.2 213 54.9
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.1e-56 223.0 294 44.2
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.0e-55 220.3 292 44.5
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 7.6e-55 218.4 282 46.1
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.3e-54 217.6 285 44.6
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 8.4e-54 214.9 241 50.6
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 1.4e-53 214.2 276 42.8
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 1.4e-53 214.2 272 45.2
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.2e-52 211.1 270 44.4
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.7e-52 209.9 288 43.8
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 6.0e-52 208.8 258 48.4
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.3e-51 206.8 271 42.8
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.6e-50 202.2 213 50.2
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 7.4e-50 201.8 274 43.4
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 6.9e-48 195.3 185 56.2
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 4.9e-46 189.1 285 42.5
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 2.5e-45 186.8 222 48.2
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 9.3e-45 184.9 225 46.2
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.6e-44 182.6 214 47.7
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.0e-43 181.4 228 47.8
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 4.3e-42 176.0 317 34.1
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 1.6e-41 174.1 216 48.6
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 1.1e-40 171.4 219 42.9
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 3.1e-40 169.9 187 48.7
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 7.6e-39 165.2 278 38.8
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.7e-38 164.1 299 36.8
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 3.2e-37 159.8 290 34.1
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 4.2e-37 159.5 167 52.7
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 3.5e-36 156.4 234 43.6
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 5.1e-35 152.5 306 32.4
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 8.7e-35 151.8 270 34.8
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.6e-33 147.5 175 45.7
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.1e-32 144.8 265 34.0
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.4e-32 144.4 211 39.8
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 4.1e-32 142.9 108 58.3
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 9.0e-32 141.7 137 53.3
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.8e-30 136.3 181 43.1
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 5.0e-30 136.0 250 36.0
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 2.5e-26 123.6 104 55.8
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 1.2e-20 104.8 88 56.8
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 3.6e-20 103.2 182 35.2
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.8e-19 100.9 58 87.9
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 2.0e-18 97.4 118 41.5
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 8.2e-17 92.0 199 33.2
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 2.4e-16 90.5 129 40.3
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 7.0e-16 89.0 108 41.7
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 3.5e-15 86.7 159 35.8
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 4.5e-15 86.3 111 44.1
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 7.7e-15 85.5 114 40.4
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.5e-13 81.3 107 43.9
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 3.2e-13 80.1 133 38.3
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 2.1e-12 77.4 96 44.8
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 8.8e-11 72.0 47 70.2
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 8.8e-11 72.0 47 70.2
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 3.7e-09 66.6 175 28.0
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.1e-08 65.1 139 33.1
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 1.6e-07 61.2 56 48.2
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 2.9e-06 57.0 67 46.3
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 3.8e-06 56.6 286 24.5


User provided reference genes

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