Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01671 Selenicereus undatus HOM05D003616 ORTHO05D383349 4.6e-91 337.8 164 100.0
Hund05170 Selenicereus undatus HOM05D003616 ORTHO05D004289 1.5e-17 93.6 106 51.9
Sc02g0008690 Simmondsia chinensis HOM05D003616 ORTHO05D004289 2.6e-17 92.8 106 50.9
Ah.11g040000 Amaranthus hybridus HOM05D003616 ORTHO05D004289 1.3e-16 90.5 80 60.0
EL10Ac1g02157 Beta vulgaris HOM05D003616 ORTHO05D004289 2.2e-16 89.7 80 60.0
Glyma.04G023200 Glycine max HOM05D003616 ORTHO05D004289 2.9e-16 89.4 107 51.4
VMungo1309G2159 Vigna mungo HOM05D003616 ORTHO05D004289 6.4e-16 88.2 107 51.4
CSS0016648 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 1.9e-15 86.7 106 46.2
Dinv39539 Davidia involucrata HOM05D003616 ORTHO05D004289 4.2e-15 85.5 106 45.3
Phvul.009G009900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 4.2e-15 85.5 107 49.5
CSS0013276 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 7.1e-15 84.7 109 47.7
AUR62013931 Chenopodium quinoa HOM05D003616 ORTHO05D004289 7.1e-15 84.7 80 55.0
Actinidia28138 Actinidia chinensis HOM05D003616 ORTHO05D004289 9.2e-15 84.3 109 48.6
MSTRG.24236 Avicennia marina HOM05D003616 ORTHO05D004289 9.2e-15 84.3 106 45.3
Cpa.g.sc3.395 Carica papaya HOM05D003616 ORTHO05D004289 9.2e-15 84.3 109 46.8
TAR625G0790 Trochodendron aralioides HOM05D003616 ORTHO05D004289 9.2e-15 84.3 109 47.7
Lj1g0017366 Lotus japonicus HOM05D003616 ORTHO05D004289 1.2e-14 84.0 107 48.6
Oeu010273.1 Olea europaea HOM05D003616 ORTHO05D004289 1.2e-14 84.0 109 45.9
CiPaw.15G143500 Carya illinoinensis HOM05D003616 ORTHO05D004289 2.1e-14 83.2 109 49.5
Atru.chr13.252 Acer truncatum HOM05D003616 ORTHO05D004289 3.5e-14 82.4 106 47.2
CsaV3_2G024290 Cucumis sativus L. HOM05D003616 ORTHO05D004289 4.6e-14 82.0 107 47.7
Oeu026133.1 Olea europaea HOM05D003616 ORTHO05D004289 4.6e-14 82.0 106 47.2
GSVIVG01009954001 Vitis vinifera HOM05D003616 ORTHO05D004289 4.6e-14 82.0 106 45.3
Sabra05G0187700 Salix brachista HOM05D003616 ORTHO05D004289 6.0e-14 81.6 124 42.7
Lj4A21T62 Lonicera japonica HOM05D003616 ORTHO05D004289 7.8e-14 81.3 106 43.4
Migut.C00863 Erythranthe guttata HOM05D003616 ORTHO05D004289 1.0e-13 80.9 107 47.7
AUR62040567 Chenopodium quinoa HOM05D003616 ORTHO05D004289 1.3e-13 80.5 80 53.8
CsaV3_1G004390 Cucumis sativus L. HOM05D003616 ORTHO05D004289 1.3e-13 80.5 140 40.7
MBI04_g06229_MAGBIO Magnolia biondii HOM05D003616 ORTHO05D004289 1.3e-13 80.5 107 47.7
Psat5g012880 Pisum sativum HOM05D003616 ORTHO05D004289 1.3e-13 80.5 107 47.7
Potri.005G242500 Populus trichocarpa HOM05D003616 ORTHO05D004289 1.3e-13 80.5 107 45.8
SalBow8G4338 Salvia bowleyana HOM05D003616 ORTHO05D004289 1.3e-13 80.5 115 42.6
Ca_15480_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 1.7e-13 80.1 107 46.7
ClCG08G014130 Citrullus lanatus HOM05D003616 ORTHO05D004289 1.7e-13 80.1 107 46.7
SGA_v2.0_scaffold25G11209 Striga asiatica HOM05D003616 ORTHO05D004289 1.7e-13 80.1 124 42.7
arahy.Tifrunner.gnm1.ann1.MX1HG7 Arachis hypogaea HOM05D003616 ORTHO05D004289 2.3e-13 79.7 107 47.7
arahy.Tifrunner.gnm1.ann1.TXJ4LD Arachis hypogaea HOM05D003616 ORTHO05D004289 2.3e-13 79.7 107 47.7
Cfa013983 Carpinus fangiana HOM05D003616 ORTHO05D004289 2.3e-13 79.7 108 46.3
Cc02_g37150 Coffea canephora HOM05D003616 ORTHO05D004289 2.3e-13 79.7 107 43.9
Nn4g24400 Nelumbo nucifera HOM05D003616 ORTHO05D004289 2.3e-13 79.7 108 44.4
SGA_v2.0_scaffold19G08556 Striga asiatica HOM05D003616 ORTHO05D004289 2.3e-13 79.7 123 41.5
QL10p029638 Quercus lobata HOM05D003616 ORTHO05D004289 3.0e-13 79.3 109 47.7
Hma1.2p1_0023F.1_g015660 Hydrangea macrophylla HOM05D003616 ORTHO05D004289 3.9e-13 79.0 106 44.3
Actinidia15440 Actinidia chinensis HOM05D003616 ORTHO05D004289 5.1e-13 78.6 80 48.8
Sed0022788 Sechium edule HOM05D003616 ORTHO05D004289 5.1e-13 78.6 107 45.8
CDE05G1955 Ceratophyllum demersum HOM05D003616 ORTHO05D004289 6.6e-13 78.2 120 43.3
PSO541G0876 Papaver somniferum HOM05D003616 ORTHO05D004289 6.6e-13 78.2 110 46.4
PSO675G9362 Papaver somniferum HOM05D003616 ORTHO05D004289 6.6e-13 78.2 110 46.4
Thecc.03G055800 Theobroma cacao HOM05D003616 ORTHO05D004289 8.7e-13 77.8 109 46.8
AT5G42150 Arabidopsis thaliana HOM05D003616 ORTHO05D004289 1.1e-12 77.4 107 47.7
CANSAT25G0701 Cannabis sativa HOM05D003616 ORTHO05D004289 1.1e-12 77.4 107 43.9
MELO3C011352.2 Cucumis melo HOM05D003616 ORTHO05D004289 1.1e-12 77.4 107 46.7
Manes.18G011100 Manihot esculenta HOM05D003616 ORTHO05D004289 1.1e-12 77.4 106 45.3
TWI12G0315 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 1.1e-12 77.4 106 43.4
unitig_748.g7720 Utricularia gibba HOM05D003616 ORTHO05D004289 1.1e-12 77.4 80 56.2
Gohir.A05G184900 Gossypium hirsutum HOM05D003616 ORTHO05D004289 1.5e-12 77.0 106 46.2
Peaxi162Scf00860g00047 Petunia axillaris HOM05D003616 ORTHO05D004289 1.5e-12 77.0 110 41.8
ATR0180G023 Amborella trichopoda HOM05D003616 ORTHO05D004289 1.9e-12 76.6 106 45.3
Duzib084G0113 Durio zibethinus HOM05D003616 ORTHO05D004289 1.9e-12 76.6 109 45.0
Gohir.D05G187700 Gossypium hirsutum HOM05D003616 ORTHO05D004289 1.9e-12 76.6 106 46.2
Gorai.009G193000 Gossypium raimondii HOM05D003616 ORTHO05D004289 1.9e-12 76.6 106 46.2
TAR629G1297 Trochodendron aralioides HOM05D003616 ORTHO05D004289 1.9e-12 76.6 109 45.0
AL8G19670 Arabidopsis lyrata HOM05D003616 ORTHO05D004289 2.5e-12 76.3 107 46.7
Gohir.A03G092600 Gossypium hirsutum HOM05D003616 ORTHO05D004289 2.5e-12 76.3 109 45.9
Gohir.D02G121200 Gossypium hirsutum HOM05D003616 ORTHO05D004289 2.5e-12 76.3 109 45.9
Gorai.005G133000 Gossypium raimondii HOM05D003616 ORTHO05D004289 2.5e-12 76.3 109 45.9
HanXRQChr06g0183781 Helianthus annuus HOM05D003616 ORTHO05D004289 2.5e-12 76.3 106 42.5
Nitab4.5_0006505g0020 Nicotiana tabacum HOM05D003616 ORTHO05D004289 2.5e-12 76.3 106 43.4
Potri.015G038300 Populus trichocarpa HOM05D003616 ORTHO05D004289 2.5e-12 76.3 111 46.8
Atru.chr9.1732 Acer truncatum HOM05D003616 ORTHO05D004289 3.3e-12 75.9 109 45.0
CAN.G311.50 Capsicum annuum HOM05D003616 ORTHO05D004289 3.3e-12 75.9 106 41.5
Ciclev10001861m.g Citrus clementina HOM05D003616 ORTHO05D004289 3.3e-12 75.9 80 53.8
COL.COLO4_26116 Corchorus olitorius HOM05D003616 ORTHO05D004289 3.3e-12 75.9 106 44.3
Thhalv10027850m.g Eutrema salsugineum HOM05D003616 ORTHO05D004289 3.3e-12 75.9 107 45.8
Lsat_1_v5_gn_2_9140 Lactuca sativa HOM05D003616 ORTHO05D004289 3.3e-12 75.9 106 44.3
BcaB04g19405 Brassica carinata HOM05D003616 ORTHO05D004289 4.3e-12 75.5 106 42.5
MD08G1010100 Malus domestica HOM05D003616 ORTHO05D004289 4.3e-12 75.5 107 45.8
Prupe.1G362400 Prunus persica HOM05D003616 ORTHO05D004289 4.3e-12 75.5 106 45.3
RcHm_v2.0_Chr6g0303331 Rosa chinensis HOM05D003616 ORTHO05D004289 4.3e-12 75.5 106 44.3
TPR.G38175 Trifolium pratense HOM05D003616 ORTHO05D004289 4.3e-12 75.5 90 48.9
vmacro17780 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 4.3e-12 75.5 73 53.4
MELO3C017361.2 Cucumis melo HOM05D003616 ORTHO05D004289 5.6e-12 75.1 109 45.9
Migut.N03175 Erythranthe guttata HOM05D003616 ORTHO05D004289 5.6e-12 75.1 106 42.5
HanXRQChr07g0204451 Helianthus annuus HOM05D003616 ORTHO05D004289 5.6e-12 75.1 110 43.6
Lalb_Chr08g0246201 Lupinus albus HOM05D003616 ORTHO05D004289 5.6e-12 75.1 107 43.9
PGR083G0078 Punica granatum HOM05D003616 ORTHO05D004289 5.6e-12 75.1 116 43.1
CARHR284720 Cardamine hirsuta HOM05D003616 ORTHO05D004289 7.3e-12 74.7 107 45.8
PGR031G0359 Punica granatum HOM05D003616 ORTHO05D004289 7.3e-12 74.7 106 46.2
Duzib093G0398 Durio zibethinus HOM05D003616 ORTHO05D004289 9.6e-12 74.3 106 45.3
Eucgr.B01000 Eucalyptus grandis HOM05D003616 ORTHO05D004289 9.6e-12 74.3 111 45.0
Solyc04g081740.3 Solanum lycopersicum HOM05D003616 ORTHO05D004289 9.6e-12 74.3 107 40.2
Sopen04g035370 Solanum pennellii HOM05D003616 ORTHO05D004289 9.6e-12 74.3 107 40.2
Thecc.08G048000 Theobroma cacao HOM05D003616 ORTHO05D004289 9.6e-12 74.3 106 45.3
Haze_22668 Corylus avellana HOM05D003616 ORTHO05D004289 1.2e-11 73.9 70 55.7
Potri.012G046600 Populus trichocarpa HOM05D003616 ORTHO05D004289 1.2e-11 73.9 111 45.9
Carub.0008s0714 Capsella rubella HOM05D003616 ORTHO05D004289 1.6e-11 73.6 107 44.9
Sp7g08670 Schrenkiella parvula HOM05D003616 ORTHO05D004289 1.6e-11 73.6 107 44.9
SEGI_35058 Sequoiadendron giganteum HOM05D003616 ORTHO05D004289 1.6e-11 73.6 108 42.6
ECA238G4543 Erigeron canadensis HOM05D003616 ORTHO05D004289 2.1e-11 73.2 106 41.5
Eucgr.H00953 Eucalyptus grandis HOM05D003616 ORTHO05D004289 2.1e-11 73.2 106 44.3
Medtr3g114070 Medicago truncatula HOM05D003616 ORTHO05D004289 2.1e-11 73.2 107 44.9
ClCG06G014280 Citrullus lanatus HOM05D003616 ORTHO05D004289 2.8e-11 72.8 109 44.0
QL02p012220 Quercus lobata HOM05D003616 ORTHO05D004289 2.8e-11 72.8 106 42.5
Cfa019655 Carpinus fangiana HOM05D003616 ORTHO05D004289 3.6e-11 72.4 111 45.9
Ciclev10008944m.g Citrus clementina HOM05D003616 ORTHO05D004289 3.6e-11 72.4 107 44.9
Sc10g0009170 Simmondsia chinensis HOM05D003616 ORTHO05D004289 3.6e-11 72.4 109 44.0
vmacro07569 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 3.6e-11 72.4 110 41.8
GSVIVG01008442001 Vitis vinifera HOM05D003616 ORTHO05D004289 3.6e-11 72.4 108 43.5
TPR.G8619 Trifolium pratense HOM05D003616 ORTHO05D004289 4.7e-11 72.0 109 44.0
CiPaw.07G146600 Carya illinoinensis HOM05D003616 ORTHO05D004289 8.1e-11 71.2 106 41.5
Haze_18855 Corylus avellana HOM05D003616 ORTHO05D004289 8.1e-11 71.2 111 45.0
Sabra12G0032700 Salix brachista HOM05D003616 ORTHO05D004289 8.1e-11 71.2 112 44.6
SGA_v2.0_scaffold92G28201 Striga asiatica HOM05D003616 ORTHO05D004289 8.1e-11 71.2 104 43.3
Ca_25333_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 1.1e-10 70.9 109 43.1
RcHm_v2.0_Chr7g0178351 Rosa chinensis HOM05D003616 ORTHO05D004289 1.1e-10 70.9 114 41.2
Sabra15G0037100 Salix brachista HOM05D003616 ORTHO05D004289 1.1e-10 70.9 75 53.3
Aqoxy2G03601 Aquilegia oxysepala HOM05D003616 ORTHO05D004289 1.4e-10 70.5 108 44.4
FAN08G3458 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.4e-10 70.5 114 43.0
FAN15G3669 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.4e-10 70.5 106 42.5
Psat1g033600 Pisum sativum HOM05D003616 ORTHO05D004289 1.4e-10 70.5 109 43.1
TWI15G0798 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 1.4e-10 70.5 110 43.6
TWI60G1662 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 1.4e-10 70.5 113 45.1
FAN27G0470 Fragaria x ananassa HOM05D003616 ORTHO05D004289 1.8e-10 70.1 107 43.9
Glyma.09G177000 Glycine max HOM05D003616 ORTHO05D004289 2.4e-10 69.7 109 44.0
Zm00001eb086680 Zea mays HOM05D003616 ORTHO05D004289 2.4e-10 69.7 80 48.8
FvH4_2g38150 Fragaria vesca HOM05D003616 ORTHO05D004289 3.1e-10 69.3 107 43.9
HanXRQChr14g0455291 Helianthus annuus HOM05D003616 ORTHO05D004289 3.1e-10 69.3 109 40.4
Os04g0244400 Oryza sativa ssp. japonica HOM05D003616 ORTHO05D004289 3.1e-10 69.3 80 52.5
Aa31LG9G12310 Aethionema arabicum HOM05D003616 ORTHO05D004289 4.0e-10 68.9 107 43.9
DCAR_003546 Daucus carota HOM05D003616 ORTHO05D004289 4.0e-10 68.9 108 38.9
ATR0626G339 Amborella trichopoda HOM05D003616 ORTHO05D004289 5.2e-10 68.6 106 39.6
BcaC03g16480 Brassica carinata HOM05D003616 ORTHO05D004289 5.2e-10 68.6 106 42.5
A02p27080 Brassica napus HOM05D003616 ORTHO05D004289 5.2e-10 68.6 106 42.5
C02p42910 Brassica napus HOM05D003616 ORTHO05D004289 5.2e-10 68.6 106 42.5
BolC2t10330H Brassica oleracea HOM05D003616 ORTHO05D004289 5.2e-10 68.6 106 42.5
BraA02t07726Z Brassica rapa HOM05D003616 ORTHO05D004289 5.2e-10 68.6 106 42.5
CANSAT80G0515 Cannabis sativa HOM05D003616 ORTHO05D004289 5.2e-10 68.6 109 44.0
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 5.2e-10 68.6 110 41.8
Rhsim06G0018600 Rhododendron simsii HOM05D003616 ORTHO05D004289 5.2e-10 68.6 78 50.0
Manes.14G171500 Manihot esculenta HOM05D003616 ORTHO05D004289 1.5e-09 67.0 107 43.9
Medtr6g069420 Medicago truncatula HOM05D003616 ORTHO05D004289 1.5e-09 67.0 111 43.2
Cc10_g01410 Coffea canephora HOM05D003616 ORTHO05D004289 2.0e-09 66.6 107 43.0
FAN04G2471 Fragaria x ananassa HOM05D003616 ORTHO05D004289 2.0e-09 66.6 114 42.1
FAN18G4023 Fragaria x ananassa HOM05D003616 ORTHO05D004289 2.0e-09 66.6 114 39.5
Glyma.07G102200 Glycine max HOM05D003616 ORTHO05D004289 2.0e-09 66.6 109 42.2
HPP92_015015 Vanilla planifolia HOM05D003616 ORTHO05D004289 2.0e-09 66.6 106 41.5
Lj2g0015525 Lotus japonicus HOM05D003616 ORTHO05D004289 2.6e-09 66.2 109 41.3
Phvul.004G150900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 4.4e-09 65.5 109 42.2
VMungo0464G1067 Vigna mungo HOM05D003616 ORTHO05D004289 5.8e-09 65.1 109 42.2
Lsat_1_v5_gn_2_108180 Lactuca sativa HOM05D003616 ORTHO05D004289 7.6e-09 64.7 109 41.3
arahy.Tifrunner.gnm1.ann1.0SP0C0 Arachis hypogaea HOM05D003616 ORTHO05D004289 9.9e-09 64.3 109 42.2
arahy.Tifrunner.gnm1.ann1.YQ88M5 Arachis hypogaea HOM05D003616 ORTHO05D004289 9.9e-09 64.3 109 42.2
Lj5A158G70 Lonicera japonica HOM05D003616 ORTHO05D004289 1.3e-08 63.9 124 38.7
PSO170G1220 Papaver somniferum HOM05D003616 ORTHO05D004289 1.3e-08 63.9 107 41.1
Sed0021008 Sechium edule HOM05D003616 ORTHO05D004289 1.3e-08 63.9 109 42.2
MD14G1236600 Malus domestica HOM05D003616 ORTHO05D004289 1.7e-08 63.5 109 39.4
FvH4_5g17390 Fragaria vesca HOM05D003616 ORTHO05D004289 2.9e-08 62.8 103 40.8
PSO700G0251 Papaver somniferum HOM05D003616 ORTHO05D004289 3.8e-08 62.4 80 45.0
Sed0005025 Sechium edule HOM05D003616 ORTHO05D004289 3.8e-08 62.4 110 40.9
Lalb_Chr14g0370571 Lupinus albus HOM05D003616 ORTHO05D004289 1.4e-07 60.5 109 39.4
Pp3c22_13980 Physcomitrium patens HOM05D003616 ORTHO05D004289 2.4e-07 59.7 110 38.2
CBR_g28548 Chara braunii HOM05D003616 ORTHO05D004289 3.2e-07 59.3 108 37.0
Oeu007366.1 Olea europaea HOM05D003616 ORTHO05D004289 1.2e-06 57.4 31 83.9
THA.LOC104798670 Tarenaya hassleriana HOM05D003616 ORTHO05D004289 1.6e-06 57.0 107 39.3
Nn3g18380 Nelumbo nucifera HOM05D003616 ORTHO05D004289 3.5e-06 55.8 32 81.2
VMungo1309G0063 Vigna mungo HOM05D003616 ORTHO05D004289 4.6e-06 55.5 106 36.8


User provided reference genes

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