Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 1.0e-268 929.5 463 100.0
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 5.4e-169 598.2 463 69.1
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 7.8e-168 594.3 463 68.0
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 4.7e-157 558.5 468 63.7
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.1e-156 557.4 468 63.5
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 2.0e-155 553.1 463 65.7
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.9e-154 549.3 445 65.6
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 8.3e-154 547.7 463 62.9
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.9e-153 546.6 429 67.6
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.4e-153 546.2 462 63.9
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 7.1e-153 544.7 471 63.1
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.6e-152 543.5 471 62.2
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.7e-151 540.0 470 61.9
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 3.9e-151 538.9 464 62.3
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 1.9e-150 536.6 465 62.6
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.6e-149 532.3 462 61.7
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.4e-148 530.4 462 61.7
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 2.3e-148 529.6 464 62.1
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 4.0e-148 528.9 469 60.8
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 1.2e-147 527.3 467 61.5
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 1.2e-147 527.3 465 61.3
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 2.0e-147 526.6 463 62.0
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 4.4e-147 525.4 468 61.8
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 1.3e-146 523.9 436 63.8
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.7e-146 523.5 468 61.1
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 2.2e-146 523.1 473 61.1
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.9e-146 522.7 467 59.7
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 6.4e-146 521.5 466 61.2
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 8.4e-146 521.2 467 61.7
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 2.4e-145 519.6 457 61.9
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 3.2e-145 519.2 463 59.8
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 5.4e-145 518.5 467 60.8
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 7.1e-145 518.1 463 60.9
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 7.1e-145 518.1 466 59.4
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 9.2e-145 517.7 463 60.5
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.6e-144 516.9 463 60.9
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 3.5e-144 515.8 463 61.1
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 1.0e-143 514.2 463 61.1
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 3.9e-143 512.3 465 61.3
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 3.9e-143 512.3 463 60.5
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.1e-142 510.8 464 60.1
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 1.9e-142 510.0 493 58.8
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 3.3e-142 509.2 456 60.7
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 5.6e-142 508.4 467 58.2
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 7.3e-142 508.1 456 60.3
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 9.6e-142 507.7 464 59.5
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 1.6e-141 506.9 461 59.2
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 1.6e-141 506.9 461 59.2
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 1.6e-141 506.9 456 60.1
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 2.8e-141 506.1 464 59.9
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 3.6e-141 505.8 462 58.9
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 6.2e-141 505.0 467 59.5
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 6.2e-141 505.0 460 59.6
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 1.1e-140 504.2 464 58.8
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 1.4e-140 503.8 443 61.9
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 1.4e-140 503.8 467 60.4
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.8e-140 503.4 461 59.0
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.8e-140 503.4 467 60.2
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 2.4e-140 503.1 456 61.2
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.4e-140 503.1 464 58.2
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 3.1e-140 502.7 452 61.1
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 4.0e-140 502.3 464 58.2
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 5.2e-140 501.9 464 59.3
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 5.2e-140 501.9 469 58.8
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 8.9e-140 501.1 467 59.5
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 8.9e-140 501.1 467 60.0
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.5e-139 500.4 439 61.0
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 1.5e-139 500.4 465 58.9
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 2.0e-139 500.0 439 63.1
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 2.6e-139 499.6 464 58.0
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 5.8e-139 498.4 470 58.5
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 8.4e-138 494.6 413 64.9
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.9e-137 493.4 463 57.7
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 7.1e-137 491.5 435 62.3
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 9.3e-137 491.1 472 58.7
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 9.3e-137 491.1 373 69.2
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.2e-136 490.7 501 56.5
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 2.1e-136 490.0 386 66.6
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 2.1e-136 490.0 411 61.8
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 2.7e-136 489.6 449 59.0
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 4.6e-136 488.8 421 60.8
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.3e-135 487.3 411 61.6
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 1.7e-135 486.9 463 56.6
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 1.7e-135 486.9 418 61.0
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 2.3e-135 486.5 464 59.1
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 3.0e-135 486.1 421 60.3
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 3.9e-135 485.7 464 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.1e-134 484.2 437 59.5
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.5e-134 483.8 414 61.1
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 2.5e-134 483.0 464 58.4
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 8.1e-133 478.0 411 60.6
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 1.4e-132 477.2 430 59.1
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 2.4e-132 476.5 467 57.2
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 1.2e-131 474.2 464 56.7
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.5e-131 473.8 433 60.5
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 7.6e-131 471.5 448 57.4
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 7.6e-131 471.5 616 47.7
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 9.9e-131 471.1 462 57.8
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 9.9e-131 471.1 432 57.6
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.4e-129 466.5 432 59.0
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 7.1e-129 464.9 451 56.8
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 7.1e-129 464.9 425 59.1
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 9.3e-129 464.5 424 59.4
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 3.5e-128 462.6 429 58.0
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.3e-127 460.7 424 59.2
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.3e-127 459.9 464 55.6
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 8.7e-127 458.0 434 57.4
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.5e-126 457.2 457 56.2
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.2e-123 447.6 446 55.6
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 2.0e-123 446.8 373 62.7
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 4.9e-122 442.2 457 52.3
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 4.9e-122 442.2 463 53.1
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.3e-119 433.3 414 57.7
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.0e-115 420.2 414 56.3
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 4.6e-112 409.1 353 62.3
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 3.0e-111 406.4 438 51.6
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.0e-103 381.3 410 52.4
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.4e-92 344.4 350 54.6
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.4e-92 344.4 414 50.5
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 4.5e-75 286.2 217 69.1
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 3.6e-56 223.4 187 64.7
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 2.6e-54 217.2 412 38.3
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 9.5e-49 198.7 112 84.8
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 8.0e-48 195.7 182 59.3
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 2.0e-43 181.0 363 38.3
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 5.0e-42 176.4 112 75.9
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 1.1e-41 175.3 132 68.2
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 1.2e-40 171.8 261 42.9
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 6.0e-27 126.3 89 70.8
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.1e-23 115.5 441 24.7
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 1.3e-16 92.0 53 81.1
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 3.8e-13 80.5 117 41.0
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 1.2e-11 75.5 42 81.0
EL10Ac8g18875 Beta vulgaris HOM05D000028 ORTHO05D003251 1.1e-09 68.9 54 63.0
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 1.5e-09 68.6 37 78.4
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 5.6e-09 66.6 113 40.7
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 9.6e-09 65.9 70 47.1
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 2.0e-06 58.2 54 55.6


User provided reference genes

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