Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 2.8e-217 758.4 411 100.0
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.2e-140 503.8 408 68.1
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 7.4e-138 494.6 407 66.6
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 5.2e-107 392.1 416 56.2
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 2.2e-105 386.7 416 54.8
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 1.2e-103 380.9 412 56.3
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 4.3e-101 372.5 411 54.3
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 3.6e-100 369.4 416 55.3
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.0e-99 367.9 411 53.8
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.4e-99 367.5 430 52.3
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 8.9e-99 364.8 409 54.3
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 8.9e-99 364.8 422 53.6
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 3.4e-98 362.8 421 53.2
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 4.4e-98 362.5 418 53.8
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 4.4e-98 362.5 348 59.5
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 1.7e-97 360.5 415 53.5
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 4.1e-96 355.9 408 55.1
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.2e-95 354.4 408 54.7
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 2.0e-95 353.6 416 52.4
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 4.6e-95 352.4 412 52.4
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 1.3e-94 350.9 413 50.6
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 1.3e-94 350.9 407 51.8
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 1.3e-94 350.9 415 51.6
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 1.3e-94 350.9 418 51.9
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.7e-94 350.5 412 52.2
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 1.5e-93 347.4 407 51.8
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.5e-93 347.4 418 50.5
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.5e-93 346.7 414 51.4
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 2.5e-93 346.7 408 52.0
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 4.3e-93 345.9 408 53.9
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 1.2e-92 344.4 409 52.1
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 1.6e-92 344.0 407 51.8
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 1.6e-92 344.0 404 51.2
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 2.1e-92 343.6 424 51.2
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 2.8e-92 343.2 405 51.1
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 8.1e-92 341.7 410 52.0
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 8.1e-92 341.7 414 51.0
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.1e-91 341.3 412 52.2
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.1e-91 341.3 416 51.4
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 1.8e-91 340.5 412 51.9
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 2.3e-91 340.1 417 49.6
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 3.1e-91 339.7 411 50.4
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 3.1e-91 339.7 404 50.7
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 5.2e-91 339.0 416 51.0
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 1.2e-90 337.8 420 51.9
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 9.8e-90 334.7 410 49.5
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 1.7e-89 334.0 410 51.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.7e-89 334.0 408 51.0
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 2.2e-89 333.6 422 49.8
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 3.7e-89 332.8 415 48.9
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 4.9e-89 332.4 412 49.5
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 8.3e-89 331.6 418 48.8
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 8.3e-89 331.6 415 51.1
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 8.3e-89 331.6 413 51.8
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 8.3e-89 331.6 425 49.9
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.1e-88 331.3 416 47.8
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.4e-88 330.9 407 49.9
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.4e-88 330.9 414 49.8
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 1.9e-88 330.5 410 49.8
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 2.4e-88 330.1 418 48.8
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 4.1e-88 329.3 418 48.6
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 4.1e-88 329.3 417 48.9
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 7.1e-88 328.6 410 49.5
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.2e-87 327.8 407 49.4
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 1.2e-87 327.8 412 49.8
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 2.1e-87 327.0 407 48.9
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.1e-87 327.0 421 50.6
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 2.7e-87 326.6 407 48.9
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 2.7e-87 326.6 407 48.9
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 3.5e-87 326.2 420 49.8
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 6.0e-87 325.5 421 50.4
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 6.0e-87 325.5 429 48.5
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 7.8e-87 325.1 413 47.9
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 7.8e-87 325.1 416 48.6
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 1.3e-86 324.3 434 47.0
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.3e-86 324.3 418 48.6
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 1.3e-86 324.3 414 50.5
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 1.7e-86 323.9 413 47.7
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.7e-86 323.9 417 49.9
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 1.7e-86 323.9 407 49.4
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.3e-86 323.6 419 50.6
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 1.9e-85 320.5 409 48.7
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 4.3e-85 319.3 396 51.3
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 4.3e-85 319.3 418 48.1
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 3.6e-84 316.2 356 52.8
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 4.0e-83 312.8 408 47.5
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 5.2e-83 312.4 415 49.6
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 6.8e-83 312.0 424 47.2
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.5e-82 310.8 350 53.1
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 2.6e-82 310.1 402 47.8
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 3.7e-81 306.2 403 47.6
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 6.4e-81 305.4 413 48.7
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.2e-80 301.6 387 47.5
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 2.1e-79 300.4 413 47.7
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 1.0e-78 298.1 417 49.6
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 1.5e-77 294.3 380 47.4
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 4.3e-77 292.7 346 49.7
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 1.2e-76 291.2 439 44.9
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 2.8e-76 290.0 415 47.7
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 1.4e-75 287.7 425 47.1
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 3.4e-74 283.1 430 44.9
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 4.9e-73 279.3 410 44.9
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 2.8e-68 263.5 342 47.1
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 2.8e-68 263.5 418 42.3
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 6.9e-67 258.8 406 44.1
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 6.9e-67 258.8 399 44.1
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 3.8e-65 253.1 307 51.1
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.2e-64 250.0 338 47.9
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 9.3e-64 248.4 307 46.9
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 4.3e-61 239.6 385 43.6
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.4e-59 234.6 377 44.3
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 6.0e-55 219.2 414 37.2
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 2.1e-52 210.7 401 38.9
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.7e-49 201.1 358 37.7
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 5.5e-48 196.1 178 60.7
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.1e-45 188.3 438 37.7
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 1.8e-43 181.0 189 57.1
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.0e-43 178.7 193 51.8
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 2.6e-42 177.2 238 48.7
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 2.5e-40 170.6 181 52.5
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 5.7e-37 159.5 210 45.2
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 3.2e-32 143.7 420 30.2
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 3.7e-28 130.2 419 29.8
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 8.2e-28 129.0 86 77.9
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.0e-26 124.4 176 45.5
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 2.6e-26 124.0 252 32.1
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 2.6e-26 124.0 87 72.4
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 3.4e-26 123.6 208 44.2
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 3.4e-26 123.6 86 74.4
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 3.4e-26 123.6 86 74.4
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 5.9e-26 122.9 284 35.2
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-21 107.1 453 26.9
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 9.4e-16 89.0 183 36.6
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 2.0e-13 81.3 90 54.4
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 4.4e-13 80.1 106 41.5
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 6.5e-09 66.2 120 41.7
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.9e-08 64.7 117 39.3


User provided reference genes

Program Settings