Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01238 Selenicereus undatus HOM05D007281 ORTHO05D009241 7.4e-146 521.2 409 100.0
Hund01235 Selenicereus undatus HOM05D007281 ORTHO05D009241 4.8e-145 518.5 409 99.5
EL10As1g23104 Beta vulgaris HOM05D007281 ORTHO05D009241 5.8e-50 202.6 201 54.2
AUR62041771 Chenopodium quinoa HOM05D007281 ORTHO05D009241 9.9e-50 201.8 189 54.5
CSS0001951 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 4.3e-45 186.4 275 40.7
CSS0030135 Camellia sinensis var. sinensis HOM05D007281 ORTHO05D009241 4.3e-45 186.4 275 40.7
Dinv15494 Davidia involucrata HOM05D007281 ORTHO05D009241 6.2e-44 182.6 190 50.0
Actinidia30489 Actinidia chinensis HOM05D007281 ORTHO05D009241 4.0e-43 179.9 207 48.3
Ah.12g062420 Amaranthus hybridus HOM05D007281 ORTHO05D009241 4.5e-42 176.4 255 42.4
Hma1.2p1_0565F.1_g179540 Hydrangea macrophylla HOM05D007281 ORTHO05D009241 9.9e-42 175.3 190 48.9
CiPaw.03G169800 Carya illinoinensis HOM05D007281 ORTHO05D009241 4.6e-39 166.4 187 46.5
GSVIVG01020865001 Vitis vinifera HOM05D007281 ORTHO05D009241 4.6e-39 166.4 209 48.8
Rhsim04G0063100 Rhododendron simsii HOM05D007281 ORTHO05D009241 7.9e-39 165.6 207 46.9
Cfa014545 Carpinus fangiana HOM05D007281 ORTHO05D009241 3.9e-38 163.3 209 44.0
Haze_13088 Corylus avellana HOM05D007281 ORTHO05D009241 3.9e-38 163.3 209 44.5
Lj1P735T42 Lonicera japonica HOM05D007281 ORTHO05D009241 3.9e-38 163.3 187 46.5
Atru.chr6.3074 Acer truncatum HOM05D007281 ORTHO05D009241 5.1e-38 162.9 187 46.0
TAR633G2446 Trochodendron aralioides HOM05D007281 ORTHO05D009241 4.3e-37 159.8 195 44.1
Sc06g0009160 Simmondsia chinensis HOM05D007281 ORTHO05D009241 7.4e-37 159.1 173 47.4
Thecc.02G171700 Theobroma cacao HOM05D007281 ORTHO05D009241 9.6e-37 158.7 210 42.9
QL03p011182 Quercus lobata HOM05D007281 ORTHO05D009241 3.1e-35 153.7 198 42.9
TAR636G0075 Trochodendron aralioides HOM05D007281 ORTHO05D009241 4.5e-34 149.8 191 42.9
Manes.01G177300 Manihot esculenta HOM05D007281 ORTHO05D009241 1.3e-33 148.3 177 42.4
MBI03_g06061_MAGBIO Magnolia biondii HOM05D007281 ORTHO05D009241 5.5e-32 142.9 195 42.6
TWI36G0005 Tripterygium wilfordii HOM05D007281 ORTHO05D009241 1.2e-31 141.7 261 36.4
Cc05_g06270 Coffea canephora HOM05D007281 ORTHO05D009241 4.6e-31 139.8 189 42.9
DCAR_012978 Daucus carota HOM05D007281 ORTHO05D009241 6.0e-31 139.4 174 45.4
Aqoxy1G00179 Aquilegia oxysepala HOM05D007281 ORTHO05D009241 1.0e-30 138.7 191 39.3
Sabra09G0050300 Salix brachista HOM05D007281 ORTHO05D009241 2.3e-30 137.5 191 37.2
Potri.001G273100 Populus trichocarpa HOM05D007281 ORTHO05D009241 3.0e-30 137.1 213 35.7
ClCG01G013900 Citrullus lanatus HOM05D007281 ORTHO05D009241 3.9e-30 136.7 190 41.1
Cpa.g.sc116.70 Carica papaya HOM05D007281 ORTHO05D009241 5.1e-30 136.3 190 43.2
Ciclev10016159m.g Citrus clementina HOM05D007281 ORTHO05D009241 5.1e-30 136.3 138 50.7
Sabra16G0168300 Salix brachista HOM05D007281 ORTHO05D009241 5.1e-30 136.3 205 38.0
Gohir.A04G105900 Gossypium hirsutum HOM05D007281 ORTHO05D009241 8.7e-30 135.6 184 39.7
Gorai.012G131800 Gossypium raimondii HOM05D007281 ORTHO05D009241 1.9e-29 134.4 182 40.1
PGR042G3246 Punica granatum HOM05D007281 ORTHO05D009241 1.9e-29 134.4 169 46.2
Gohir.D04G145700 Gossypium hirsutum HOM05D007281 ORTHO05D009241 2.5e-29 134.0 182 39.6
Nitab4.5_0002370g0080 Nicotiana tabacum HOM05D007281 ORTHO05D009241 4.3e-29 133.3 189 42.9
PSO384G2432 Papaver somniferum HOM05D007281 ORTHO05D009241 4.3e-29 133.3 189 42.3
ECA234G1359 Erigeron canadensis HOM05D007281 ORTHO05D009241 2.8e-28 130.6 190 39.5
Peaxi162Scf00007g02726 Petunia axillaris HOM05D007281 ORTHO05D009241 2.8e-28 130.6 180 42.8
Solyc07g054680.3 Solanum lycopersicum HOM05D007281 ORTHO05D009241 8.2e-28 129.0 189 41.3
Nitab4.5_0001871g0100 Nicotiana tabacum HOM05D007281 ORTHO05D009241 5.3e-27 126.3 192 41.1
Glyma.13G301000 Glycine max HOM05D007281 ORTHO05D009241 6.9e-27 125.9 176 37.5
Nn8g41289 Nelumbo nucifera HOM05D007281 ORTHO05D009241 1.2e-26 125.2 188 39.9
HanXRQChr15g0488101 Helianthus annuus HOM05D007281 ORTHO05D009241 5.8e-26 122.9 217 34.1
SalBow7G4701 Salvia bowleyana HOM05D007281 ORTHO05D009241 7.6e-26 122.5 201 37.3
CANSAT64G1356 Cannabis sativa HOM05D007281 ORTHO05D009241 1.0e-25 122.1 188 39.4
Duzib052G0115 Durio zibethinus HOM05D007281 ORTHO05D009241 1.0e-25 122.1 159 42.8
Potri.009G067400 Populus trichocarpa HOM05D007281 ORTHO05D009241 1.0e-25 122.1 135 42.2
CsaV3_1G014130 Cucumis sativus L. HOM05D007281 ORTHO05D009241 5.0e-25 119.8 202 37.6
CAN.G508.23 Capsicum annuum HOM05D007281 ORTHO05D009241 6.5e-25 119.4 189 38.6
SGA_v2.0_scaffold70G23463 Striga asiatica HOM05D007281 ORTHO05D009241 1.9e-24 117.9 163 41.7
MSTRG.13304 Avicennia marina HOM05D007281 ORTHO05D009241 2.5e-24 117.5 186 38.2
Lsat_1_v5_gn_4_69540 Lactuca sativa HOM05D007281 ORTHO05D009241 3.2e-24 117.1 184 34.8
Sed0007470 Sechium edule HOM05D007281 ORTHO05D009241 1.3e-22 111.7 207 38.2
Migut.M00334 Erythranthe guttata HOM05D007281 ORTHO05D009241 3.0e-22 110.5 160 43.1
AL1G23070 Arabidopsis lyrata HOM05D007281 ORTHO05D009241 3.9e-22 110.2 182 40.7
Thhalv10007999m.g Eutrema salsugineum HOM05D007281 ORTHO05D009241 3.3e-21 107.1 179 37.4
Lj3g0021775 Lotus japonicus HOM05D007281 ORTHO05D009241 7.4e-21 105.9 177 35.6
Carub.0001s1156 Capsella rubella HOM05D007281 ORTHO05D009241 1.3e-20 105.1 183 39.9
Ca_01535_v3 Cicer arietinum L. HOM05D007281 ORTHO05D009241 1.3e-20 105.1 166 36.7
vmacro09292 Vaccinium macrocarpon HOM05D007281 ORTHO05D009241 1.3e-20 105.1 140 45.7
VMungo1080G1478 Vigna mungo HOM05D007281 ORTHO05D009241 1.3e-20 105.1 214 32.7
PGSC0003DMG400018370 Solanum tuberosum HOM05D007281 ORTHO05D009241 8.2e-20 102.4 207 35.7
HPP92_019763 Vanilla planifolia HOM05D007281 ORTHO05D009241 1.4e-19 101.7 180 34.4
THA.LOC104809493 Tarenaya hassleriana HOM05D007281 ORTHO05D009241 1.8e-19 101.3 171 36.8
Sp1g10520 Schrenkiella parvula HOM05D007281 ORTHO05D009241 4.1e-19 100.1 181 34.8
A06p09560 Brassica napus HOM05D007281 ORTHO05D009241 6.9e-19 99.4 136 38.2
C05p11270 Brassica napus HOM05D007281 ORTHO05D009241 1.2e-18 98.6 202 32.2
BolC5t29876H Brassica oleracea HOM05D007281 ORTHO05D009241 1.2e-18 98.6 202 32.2
BcaC05g25243 Brassica carinata HOM05D007281 ORTHO05D009241 2.6e-18 97.4 203 31.5
arahy.Tifrunner.gnm1.ann1.HBB9ZN Arachis hypogaea HOM05D001233 ORTHO05D009241 4.5e-18 96.7 179 32.4
BraA06t24146Z Brassica rapa HOM05D007281 ORTHO05D009241 5.9e-18 96.3 136 37.5
Medtr2g090030 Medicago truncatula HOM05D007281 ORTHO05D009241 5.9e-18 96.3 167 32.9
Medtr2g007050 Medicago truncatula HOM05D007281 ORTHO05D009241 1.0e-17 95.5 167 32.9
Lalb_Chr14g0366621 Lupinus albus HOM05D007281 ORTHO05D009241 2.2e-17 94.4 180 33.9
arahy.Tifrunner.gnm1.ann1.JM9TK1 Arachis hypogaea HOM05D007281 ORTHO05D009241 8.5e-17 92.4 160 34.4
PSO339G5345 Papaver somniferum HOM05D007281 ORTHO05D009241 1.9e-16 91.3 168 37.5
Psat5g268080 Pisum sativum HOM05D007281 ORTHO05D009241 3.2e-16 90.5 168 32.7
AT1G11900 Arabidopsis thaliana HOM05D007281 ORTHO05D009241 5.5e-16 89.7 170 36.5
arahy.Tifrunner.gnm1.ann1.F4A8JX Arachis hypogaea HOM05D007281 ORTHO05D009241 5.5e-16 89.7 132 36.4
CARHR012220 Cardamine hirsuta HOM05D007281 ORTHO05D009241 9.4e-16 89.0 182 35.7
Aa31LG1G2830 Aethionema arabicum HOM05D007281 ORTHO05D009241 1.2e-15 88.6 179 36.3
Phvul.005G107600 Phaseolus vulgaris HOM05D007281 ORTHO05D009241 1.6e-15 88.2 159 34.0
Eucgr.A01777 Eucalyptus grandis HOM05D007281 ORTHO05D009241 2.1e-15 87.8 97 46.4
TPR.G27076 Trifolium pratense HOM05D007281 ORTHO05D009241 1.8e-14 84.7 163 31.9
Prupe.3G231200 Prunus persica HOM05D007281 ORTHO05D009241 4.3e-13 80.1 123 36.6
MD17G1084400 Malus domestica HOM05D007281 ORTHO05D009241 7.4e-13 79.3 122 34.4
ATR1127G094 Amborella trichopoda HOM05D007281 ORTHO05D009241 3.4e-10 70.5 144 33.3
FvH4_6g24020 Fragaria vesca HOM05D007281 ORTHO05D009241 4.2e-08 63.5 121 28.9
FAN14G1737 Fragaria x ananassa HOM05D007281 ORTHO05D009241 4.2e-08 63.5 121 28.9
RcHm_v2.0_Chr1g0342741 Rosa chinensis HOM05D007281 ORTHO05D009241 4.2e-08 63.5 114 28.1
FAN02G4278 Fragaria x ananassa HOM05D007281 ORTHO05D009241 1.6e-07 61.6 121 28.9
Os05g0481800 Oryza sativa ssp. japonica HOM05D007281 ORTHO05D009241 2.1e-07 61.2 115 27.8
Zm00001eb290940 Zea mays HOM05D007281 ORTHO05D009241 2.1e-07 61.2 104 29.8
FAN14G4544 Fragaria x ananassa HOM05D007281 ORTHO05D009241 4.7e-07 60.1 121 28.9
FvH4_6g44590 Fragaria vesca HOM05D007281 ORTHO05D009241 7.9e-07 59.3 121 28.1
Sopen07g028580 Solanum pennellii HOM05D007281 ORTHO05D009241 7.9e-07 59.3 112 37.5
Nn2g14540 Nelumbo nucifera HOM05D007281 ORTHO05D009241 6.7e-06 56.2 74 40.5


User provided reference genes

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