Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 0.0e+00 1099.7 617 100.0
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 2.9e-69 267.3 258 58.5
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 7.9e-67 259.2 608 35.7
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 1.0e-66 258.8 234 62.4
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 2.5e-65 254.2 241 58.1
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 3.3e-65 253.8 258 57.0
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 5.7e-65 253.1 231 61.5
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.3e-64 251.9 256 57.0
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 3.7e-64 250.4 233 61.4
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 4.8e-64 250.0 228 58.8
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.8e-64 250.0 255 56.5
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 6.3e-64 249.6 233 60.9
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 8.2e-64 249.2 255 56.5
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 8.2e-64 249.2 231 59.3
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.4e-63 247.7 255 55.7
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 5.3e-63 246.5 256 55.1
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 9.0e-63 245.7 228 61.0
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.0e-62 244.6 258 55.8
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.0e-62 244.6 258 54.7
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 2.0e-62 244.6 244 55.3
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 5.9e-62 243.0 260 54.6
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.0e-61 242.3 231 57.6
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.3e-61 241.9 245 54.7
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.3e-61 241.9 251 56.2
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.3e-61 241.9 231 59.7
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 6.5e-61 239.6 231 55.8
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 8.4e-61 239.2 246 56.1
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.1e-60 238.8 239 56.9
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.4e-60 238.4 233 55.8
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 2.5e-60 237.7 259 52.1
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 3.2e-60 237.3 261 53.3
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 9.3e-60 235.7 258 52.3
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 9.3e-60 235.7 245 53.5
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 1.2e-59 235.3 237 55.3
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.6e-59 235.0 230 57.0
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.6e-59 235.0 265 50.9
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 2.1e-59 234.6 236 55.9
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.7e-59 234.2 247 57.1
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 2.7e-59 234.2 228 56.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 2.7e-59 234.2 252 54.0
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 3.5e-59 233.8 250 56.4
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 4.6e-59 233.4 604 33.8
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 6.1e-59 233.0 251 54.2
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.3e-58 231.9 256 52.7
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.8e-58 231.5 250 55.6
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 3.0e-58 230.7 244 54.5
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 5.1e-58 229.9 246 54.1
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 5.1e-58 229.9 252 53.2
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 6.7e-58 229.6 251 52.2
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 8.7e-58 229.2 231 55.8
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 2.5e-57 227.6 242 54.5
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 5.7e-57 226.5 255 52.5
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 2.2e-56 224.6 253 53.4
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 6.3e-56 223.0 231 54.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 6.3e-56 223.0 606 38.0
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.1e-55 222.2 231 53.7
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.1e-55 222.2 248 51.2
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 1.4e-55 221.9 237 54.0
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.8e-55 221.5 257 51.0
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 5.3e-55 219.9 252 51.6
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 6.9e-55 219.5 239 53.1
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 6.9e-55 219.5 162 69.1
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.2e-54 218.8 242 53.3
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 4.5e-54 216.9 250 53.6
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.3e-53 215.3 163 65.6
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 1.7e-53 214.9 235 52.8
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.7e-53 214.9 252 53.2
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 2.9e-53 214.2 250 50.4
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 8.5e-53 212.6 248 50.8
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.1e-52 212.2 253 49.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.9e-52 211.5 252 48.8
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.9e-52 211.5 253 50.6
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.6e-51 208.4 238 51.7
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 3.6e-51 207.2 252 49.2
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 7.9e-51 206.1 240 48.3
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 7.9e-51 206.1 240 48.3
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 1.0e-50 205.7 253 49.4
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.4e-50 205.3 243 46.9
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.8e-50 204.9 247 50.6
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 5.1e-50 203.4 253 47.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.1e-49 202.2 625 32.5
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.5e-49 201.8 253 48.2
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.7e-48 198.4 235 51.5
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 3.7e-48 197.2 236 52.1
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 1.8e-47 194.9 250 47.2
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 1.8e-47 194.9 146 67.8
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 3.1e-47 194.1 206 54.4
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.7e-45 188.3 157 66.2
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.5e-44 184.5 270 44.8
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 3.0e-42 177.6 225 45.8
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 6.7e-42 176.4 168 55.4
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 2.0e-41 174.9 131 64.1
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 8.2e-40 169.5 183 55.2
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 2.4e-39 167.9 159 56.6
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 9.1e-39 166.0 159 54.7
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 9.1e-39 166.0 159 54.7
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 2.0e-38 164.9 159 55.3
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 2.0e-38 164.9 235 44.7
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 2.6e-38 164.5 229 42.8
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 3.5e-38 164.1 252 42.5
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 2.2e-37 161.4 254 42.1
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 8.5e-37 159.5 151 53.6
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 1.1e-36 159.1 177 52.0
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 4.0e-34 150.6 244 43.0
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 4.0e-34 150.6 256 41.0
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 7.5e-33 146.4 239 38.5
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 6.3e-32 143.3 238 36.6
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.8e-31 141.7 177 50.8
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.0e-30 138.3 157 48.4
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.5e-30 137.1 196 45.9
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 5.9e-30 136.7 160 46.9
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.3e-29 135.6 91 71.4
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.2e-27 129.0 249 39.4
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 4.7e-27 127.1 119 53.8
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 1.7e-24 118.6 109 53.2
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 6.3e-24 116.7 162 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 4.1e-23 114.0 136 44.9
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 2.9e-21 107.8 76 65.8
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.0e-21 107.1 82 64.6
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.9e-20 105.1 264 34.8
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 3.6e-19 100.9 94 55.3
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 9.8e-17 92.8 189 38.1
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 1.8e-15 88.6 121 43.8
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 3.1e-15 87.8 63 66.7
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 7.0e-15 86.7 106 44.3
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.0e-14 85.1 116 41.4
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 8.6e-13 79.7 156 32.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 3.3e-12 77.8 217 32.7
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 5.6e-12 77.0 68 57.4
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 7.3e-12 76.6 45 71.1
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 4.7e-11 73.9 217 32.3
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 3.4e-09 67.8 56 58.9
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 2.9e-08 64.7 52 59.6
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 3.7e-08 64.3 130 38.5
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 6.4e-08 63.5 86 39.5
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 1.8e-07 62.0 215 30.2
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 3.2e-07 61.2 84 39.3
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 5.4e-07 60.5 81 39.5
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 7.0e-07 60.1 84 38.1
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 7.8e-06 56.6 65 46.2


User provided reference genes

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