Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 0.0e+00 1585.5 907 100.0
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 8.6e-195 684.9 841 51.5
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.9e-179 632.9 907 47.3
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 3.4e-175 619.8 882 45.9
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 3.7e-174 616.3 906 44.3
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 7.0e-173 612.1 897 46.4
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 1.4e-133 481.5 779 39.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 3.5e-132 476.9 900 37.8
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 6.2e-129 466.1 775 38.5
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 3.3e-122 443.7 887 41.7
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.2e-119 435.3 824 35.1
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 1.7e-118 431.4 757 37.3
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-117 428.7 784 35.7
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 9.4e-117 425.6 860 34.4
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 2.2e-113 414.5 914 40.8
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 1.4e-112 411.8 886 34.3
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 5.3e-112 409.8 915 34.9
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 1.5e-111 408.3 783 35.6
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.5e-111 408.3 892 33.5
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 2.6e-111 407.5 849 36.0
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 5.9e-111 406.4 797 34.5
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 1.3e-110 405.2 853 38.5
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 4.7e-108 396.7 942 40.1
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 6.1e-108 396.4 905 33.0
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 3.3e-106 390.6 902 33.8
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 7.4e-106 389.4 894 34.5
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 6.3e-105 386.3 937 33.3
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 2.0e-103 381.3 875 42.6
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 5.9e-103 379.8 848 33.7
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.3e-102 378.6 918 37.1
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 8.5e-102 375.9 906 33.8
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.5e-101 375.2 796 37.3
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.5e-101 375.2 927 35.3
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 1.5e-101 375.2 778 33.8
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 2.1e-100 371.3 900 35.1
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 8.0e-100 369.4 896 33.8
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 2.3e-99 367.9 906 32.2
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 2.3e-99 367.9 898 33.1
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 3.0e-99 367.5 947 31.6
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 8.8e-99 365.9 902 31.9
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.5e-98 365.2 799 43.2
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 2.6e-98 364.4 762 41.1
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 4.4e-98 363.6 902 31.8
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 5.7e-98 363.2 902 31.8
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 5.7e-98 363.2 922 33.0
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 2.2e-97 361.3 819 32.8
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 8.2e-97 359.4 796 42.6
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.8e-96 358.2 849 40.4
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 9.1e-96 355.9 899 31.8
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 7.2e-93 346.3 780 32.8
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 1.2e-92 345.5 886 34.8
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 1.6e-92 345.1 819 33.5
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 1.0e-91 342.4 827 31.9
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.2e-91 340.1 930 30.3
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.2e-90 339.0 837 34.3
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 3.4e-90 337.4 916 31.1
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 4.4e-90 337.0 895 30.9
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 7.5e-90 336.3 899 31.6
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 3.7e-89 334.0 909 31.4
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.4e-88 332.0 780 31.4
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 2.4e-88 331.3 912 39.1
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 2.4e-88 331.3 903 33.0
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.0e-87 328.2 913 31.2
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.3e-86 325.5 849 32.2
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 2.2e-86 324.7 858 31.0
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 5.0e-86 323.6 919 30.8
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.1e-85 322.4 782 30.7
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 1.5e-85 322.0 882 31.9
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 1.5e-85 322.0 881 30.6
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 9.4e-85 319.3 932 30.4
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 8.0e-84 316.2 884 31.3
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 3.4e-82 310.8 864 31.6
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 7.5e-82 309.7 898 31.3
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.3e-81 308.9 901 29.6
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 4.9e-81 307.0 771 31.4
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 8.3e-81 306.2 903 30.6
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 8.3e-81 306.2 897 31.5
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 9.1e-80 302.8 754 30.0
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.2e-79 302.4 755 31.0
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 3.5e-79 300.8 905 30.5
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 7.7e-79 299.7 904 29.2
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 3.3e-77 294.3 897 30.9
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 5.5e-77 293.5 880 31.0
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 5.5e-77 293.5 912 28.8
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 5.5e-77 293.5 925 29.5
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 7.2e-77 293.1 880 31.0
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 1.2e-76 292.4 879 30.9
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 4.7e-76 290.4 958 32.6
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 1.8e-75 288.5 812 40.3
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 6.8e-75 286.6 906 30.8
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 6.8e-75 286.6 840 33.3
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 1.5e-74 285.4 834 28.4
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 3.4e-74 284.3 776 31.7
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 3.7e-73 280.8 792 30.2
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 8.3e-73 279.6 898 34.5
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 1.1e-72 279.3 698 29.8
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 3.2e-72 277.7 915 29.1
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 3.2e-72 277.7 945 27.5
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 4.1e-72 277.3 765 30.8
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.3e-70 272.3 916 29.4
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 2.3e-70 271.6 895 28.7
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 2.3e-67 261.5 971 27.8
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 1.2e-66 259.2 769 39.8
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 1.5e-66 258.8 749 28.8
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 8.3e-65 253.1 851 27.8
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 7.0e-64 250.0 798 27.7
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 6.0e-63 246.9 846 27.9
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 1.3e-62 245.7 759 31.4
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.1e-59 236.1 778 29.9
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 4.9e-57 227.3 211 55.5
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 3.2e-56 224.6 815 25.2
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 9.2e-56 223.0 758 31.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 6.2e-52 210.3 736 26.6
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 5.4e-48 197.2 859 25.5
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 1.6e-47 195.7 168 55.4
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.6e-47 195.7 267 45.3
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.2e-40 171.4 167 51.5
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 7.1e-40 170.2 374 32.4
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.0e-38 166.4 293 36.2
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 1.5e-37 162.5 397 31.5
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.4e-35 156.0 270 34.4
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 6.9e-35 153.7 322 35.1
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 3.2e-32 144.8 163 47.2
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 7.1e-32 143.7 471 28.0
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 7.9e-31 140.2 150 50.0
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 3.9e-30 137.9 353 30.0
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.1e-30 137.5 259 34.4
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 2.7e-23 115.2 212 34.0
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 1.6e-20 105.9 196 34.7
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 3.7e-20 104.8 274 31.8
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 4.5e-18 97.8 236 31.8
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 1.0e-17 96.7 134 39.6
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 4.9e-17 94.4 274 30.7
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 5.5e-16 90.9 815 30.7
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 1.8e-14 85.9 250 32.0
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.3e-12 79.7 84 51.2
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 6.3e-12 77.4 120 35.8
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 5.0e-09 67.8 143 34.3
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.6e-07 62.8 73 45.2
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 8.7e-06 57.0 68 48.5


User provided reference genes

Program Settings