Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 1.0e-168 596.7 296 100.0
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 8.7e-80 301.2 302 59.6
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.1e-78 296.6 190 81.6
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 5.5e-50 202.2 191 54.5
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.5e-50 202.2 195 55.9
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 2.7e-49 199.9 192 56.2
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 2.6e-47 193.4 191 58.1
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 9.7e-47 191.4 192 55.2
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 8.2e-46 188.3 189 50.8
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 6.9e-45 185.3 189 54.0
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.9e-43 179.9 209 45.9
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 8.5e-43 178.3 206 47.1
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 1.1e-42 177.9 209 45.5
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 1.1e-42 177.9 209 45.5
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 5.5e-42 175.6 209 43.5
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 1.2e-41 174.5 186 51.1
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 1.0e-40 171.4 213 45.1
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 2.0e-39 167.2 208 46.6
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 2.6e-39 166.8 209 42.1
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 5.7e-39 165.6 211 43.1
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 5.7e-39 165.6 209 43.5
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 9.7e-39 164.9 212 42.9
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 2.2e-38 163.7 209 43.1
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 2.8e-38 163.3 204 43.1
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 2.8e-38 163.3 202 45.5
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 6.3e-38 162.2 205 44.9
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 8.2e-38 161.8 211 42.2
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 8.2e-38 161.8 206 45.1
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 1.8e-37 160.6 209 41.6
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 5.3e-37 159.1 211 41.7
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 1.2e-36 157.9 206 43.2
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 2.0e-36 157.1 207 41.5
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 2.0e-36 157.1 199 44.7
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 3.5e-36 156.4 200 42.0
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 3.5e-36 156.4 206 42.7
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 4.5e-36 156.0 204 42.6
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 4.5e-36 156.0 205 42.9
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 4.5e-36 156.0 207 41.1
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 1.0e-35 154.8 209 41.1
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 1.3e-35 154.5 205 41.0
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 1.7e-35 154.1 201 42.8
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 1.7e-35 154.1 201 42.8
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 1.7e-35 154.1 201 42.8
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 1.7e-35 154.1 198 41.9
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 2.2e-35 153.7 210 42.4
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 2.9e-35 153.3 206 42.2
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 5.0e-35 152.5 211 38.9
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 6.5e-35 152.1 206 41.7
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 6.5e-35 152.1 206 41.7
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 8.5e-35 151.8 210 41.4
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 1.1e-34 151.4 202 40.1
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 1.5e-34 151.0 213 38.5
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.9e-34 150.6 196 43.9
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 3.2e-34 149.8 212 39.2
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 4.2e-34 149.4 210 40.5
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 5.5e-34 149.1 222 38.7
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 7.2e-34 148.7 148 57.4
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 9.4e-34 148.3 189 42.3
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 9.4e-34 148.3 221 38.5
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 9.4e-34 148.3 212 39.2
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 1.6e-33 147.5 203 39.9
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 2.1e-33 147.1 217 38.2
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 2.7e-33 146.7 217 40.6
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 2.7e-33 146.7 212 38.7
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 4.7e-33 146.0 202 41.1
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 8.0e-33 145.2 205 39.0
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 1.0e-32 144.8 195 40.0
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 1.4e-32 144.4 198 43.9
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 1.8e-32 144.1 199 41.7
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 1.8e-32 144.1 218 39.4
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.8e-32 144.1 202 41.6
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 4.0e-32 142.9 188 43.6
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.0e-32 142.9 207 40.1
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 6.7e-32 142.1 203 40.4
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.2e-31 141.4 210 39.0
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 1.2e-31 141.4 201 40.3
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.2e-31 141.4 233 38.6
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 2.0e-31 140.6 206 38.8
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 2.0e-31 140.6 210 39.0
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 2.0e-31 140.6 231 35.5
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 3.3e-31 139.8 195 44.1
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 1.7e-30 137.5 186 43.5
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 1.7e-30 137.5 186 43.5
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 4.8e-30 136.0 210 36.7
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 6.3e-30 135.6 189 41.3
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 1.1e-29 134.8 192 40.6
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 3.1e-29 133.3 222 37.4
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 5.3e-29 132.5 196 34.7
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 9.1e-29 131.7 235 37.0
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.6e-28 131.0 212 35.4
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 2.7e-28 130.2 194 37.1
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 3.5e-28 129.8 196 34.2
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 3.5e-28 129.8 197 35.0
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 5.9e-28 129.0 193 39.4
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.3e-27 127.9 205 35.1
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 2.2e-27 127.1 223 34.1
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 2.9e-27 126.7 191 37.7
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 8.5e-27 125.2 247 35.2
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 1.9e-26 124.0 207 37.7
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 4.2e-26 122.9 213 33.3
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 9.4e-26 121.7 181 40.9
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 3.6e-25 119.8 236 36.9
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 4.7e-25 119.4 219 35.2
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 4.7e-25 119.4 225 33.8
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 8.0e-25 118.6 241 35.7
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 1.0e-24 118.2 168 40.5
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 1.4e-24 117.9 196 37.8
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.4e-24 117.9 220 32.3
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 2.0e-23 114.0 201 31.8
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 2.6e-23 113.6 170 39.4
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 1.7e-22 110.9 216 35.2
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 2.8e-22 110.2 102 56.9
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.8e-21 107.5 109 49.5
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 2.4e-21 107.1 209 30.6
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 3.1e-21 106.7 168 39.3
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 2.0e-20 104.0 211 35.5
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 7.7e-20 102.1 116 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 2.3e-19 100.5 199 28.6
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 2.3e-19 100.5 207 29.0
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 6.5e-19 99.0 194 32.0
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 6.5e-19 99.0 194 32.0
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 4.2e-18 96.3 161 33.5
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 3.6e-17 93.2 177 30.5
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.6e-17 93.2 118 44.9
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.8e-16 90.9 135 37.0
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 2.3e-16 90.5 215 28.8
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 2.0e-15 87.4 194 34.0
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.3e-14 84.7 127 40.2
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 6.3e-14 82.4 71 53.5
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.6e-12 77.8 61 57.4
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 2.0e-12 77.4 76 50.0
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.3e-11 74.7 116 38.8
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-11 74.3 56 58.9
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 1.7e-11 74.3 56 58.9
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.1e-10 71.6 65 47.7
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.2e-09 68.2 61 49.2
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 1.2e-09 68.2 206 25.7
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.8e-08 64.3 71 47.9
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 2.3e-08 63.9 76 38.2
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.8e-08 62.4 70 42.9
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 8.9e-08 62.0 164 31.1
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 8.9e-08 62.0 55 47.3
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.5e-07 61.2 124 30.6
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.4e-07 59.7 206 25.2
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 4.9e-06 56.2 125 33.6


User provided reference genes

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