Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00727 Selenicereus undatus HOM05D063244 ORTHO05D011611 3.7e-188 661.4 329 100.0
Hund10220 Selenicereus undatus HOM05D000003 ORTHO05D000007 3.0e-33 146.7 168 40.5
Hund08810 Selenicereus undatus HOM05D000003 ORTHO05D000007 1.3e-28 131.3 204 35.8
Hund08477 Selenicereus undatus HOM05D063244 ORTHO05D011611 7.3e-27 125.6 94 71.3
Hund10169 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.5e-24 117.9 197 33.5
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.0e-20 105.1 146 40.4
Hund10601 Selenicereus undatus HOM05D010531 ORTHO05D000105 1.8e-17 94.4 76 56.6
EL10Ac2g03240 Beta vulgaris HOM05D000045 ORTHO05D000695 4.0e-17 93.2 143 32.2
EL10Ac8g19433 Beta vulgaris HOM05D000003 ORTHO05D000007 6.8e-17 92.4 202 26.7
EL10Ac5g11620 Beta vulgaris HOM05D000003 ORTHO05D000007 2.0e-16 90.9 202 26.2
Hund04109 Selenicereus undatus HOM05D018245 ORTHO05D000006 1.3e-15 88.2 112 40.2
EL10Ac1g01948 Beta vulgaris HOM05D000003 ORTHO05D000006 1.7e-15 87.8 208 25.5
EL10Ac9g22997 Beta vulgaris HOM05D000003 ORTHO05D000007 2.2e-15 87.4 202 26.7
EL10Ac8g19445 Beta vulgaris HOM05D000003 ORTHO05D000007 3.7e-15 86.7 198 26.3
Hund23554 Selenicereus undatus HOM05D000003 ORTHO05D011611 1.1e-14 85.1 81 45.7
EL10Ac6g14322 Beta vulgaris HOM05D000003 ORTHO05D000007 1.9e-14 84.3 144 31.9
EL10Ac7g17161 Beta vulgaris HOM05D000003 ORTHO05D000007 1.9e-14 84.3 112 33.0
CANSAT11G0526 Cannabis sativa HOM05D000003 ORTHO05D000007 2.4e-14 84.0 176 27.8
EL10Ac6g14708 Beta vulgaris HOM05D000003 ORTHO05D000007 7.0e-14 82.4 168 27.4
EL10Ac1g01488 Beta vulgaris HOM05D000003 ORTHO05D000007 2.1e-13 80.9 156 25.6
EL10Ac3g06546 Beta vulgaris HOM05D000003 ORTHO05D000007 2.1e-13 80.9 175 25.7
CANSAT80G0090 Cannabis sativa HOM05D000003 ORTHO05D000007 4.6e-13 79.7 176 26.7
EL10Ac6g13827 Beta vulgaris HOM05D000003 ORTHO05D000007 1.3e-12 78.2 167 28.1
CANSAT01G0243 Cannabis sativa HOM05D000003 ORTHO05D000007 1.3e-12 78.2 176 26.1
CANSAT25G1254 Cannabis sativa HOM05D000003 ORTHO05D000007 6.6e-12 75.9 176 25.6
Nitab4.5_0002525g0050 Nicotiana tabacum HOM05D000003 ORTHO05D000007 8.6e-12 75.5 117 31.6
Hund31250 Selenicereus undatus HOM05D014118 ORTHO05D011611 1.1e-11 75.1 68 47.1
EL10Ac6g14081 Beta vulgaris HOM05D000003 ORTHO05D000007 1.5e-11 74.7 193 25.4
EL10Ac7g16542 Beta vulgaris HOM05D000003 ORTHO05D000007 1.5e-11 74.7 152 33.6
Ah.03g143450 Amaranthus hybridus HOM05D000003 ORTHO05D000007 2.5e-11 73.9 175 27.4
Hund04103 Selenicereus undatus HOM05D009504 ORTHO05D011611 3.3e-11 73.6 53 56.6
Hund15018 Selenicereus undatus HOM05D000185 ORTHO05D011611 5.6e-11 72.8 68 44.1
CANSAT21G1545 Cannabis sativa HOM05D000003 ORTHO05D000007 7.3e-11 72.4 224 23.2
CANSAT54G2202 Cannabis sativa HOM05D000003 ORTHO05D000007 7.3e-11 72.4 184 24.5
Ah.10g026810 Amaranthus hybridus HOM05D000003 ORTHO05D000007 9.5e-11 72.0 171 28.1
Nitab4.5_0003024g0040 Nicotiana tabacum HOM05D000003 ORTHO05D000007 9.5e-11 72.0 160 26.2
EL10Ac3g06400 Beta vulgaris HOM05D000003 ORTHO05D000007 1.2e-10 71.6 177 23.7
Ah.10g029790 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.6e-10 71.2 163 27.6
Ah.12g063330 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.6e-10 71.2 177 25.4
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 2.8e-10 70.5 177 23.2
Ah.14g080910 Amaranthus hybridus HOM05D000003 ORTHO05D000007 2.8e-10 70.5 172 26.7
CAN.G1463.3 Capsicum annuum HOM05D000479 ORTHO05D000007 3.6e-10 70.1 180 25.6
Nitab4.5_0005640g0020 Nicotiana tabacum HOM05D000003 ORTHO05D011611 4.7e-10 69.7 154 26.6
Nitab4.5_0001519g0110 Nicotiana tabacum HOM05D000003 ORTHO05D000007 6.2e-10 69.3 190 26.3
EL10Ac1g01965 Beta vulgaris HOM05D000003 ORTHO05D000007 1.1e-09 68.6 83 33.7
CANSAT65G0002 Cannabis sativa HOM05D000003 ORTHO05D000007 1.1e-09 68.6 176 23.9
Sopen00g005560 Solanum pennellii HOM05D000003 ORTHO05D000006 1.1e-09 68.6 211 24.6
EL10Ac7g17172 Beta vulgaris HOM05D000003 ORTHO05D000007 1.4e-09 68.2 103 35.9
CANSAT78G1995 Cannabis sativa HOM05D000003 ORTHO05D000007 1.4e-09 68.2 162 24.7
Ah.15g097110 Amaranthus hybridus HOM05D000003 ORTHO05D000007 2.3e-09 67.4 175 23.4
CANSAT01G1178 Cannabis sativa HOM05D000003 ORTHO05D000007 2.3e-09 67.4 176 22.2
Sopen05g013420 Solanum pennellii HOM05D000003 ORTHO05D000004 3.1e-09 67.0 238 23.5
Ah.13g067160 Amaranthus hybridus HOM05D017406 ORTHO05D000007 4.0e-09 66.6 58 44.8
Ah.11g040280 Amaranthus hybridus HOM05D000003 ORTHO05D011611 5.2e-09 66.2 47 51.1
CANSAT01G1392 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-09 66.2 181 24.3
EL10Ac4g09212 Beta vulgaris HOM05D000003 ORTHO05D000007 6.8e-09 65.9 173 23.1
Peaxi162Scf00699g00327 Petunia axillaris HOM05D000003 ORTHO05D000007 8.9e-09 65.5 134 26.1
Sopen03g020920 Solanum pennellii HOM05D015165 ORTHO05D017089 1.2e-08 65.1 68 41.2
Ah.04g159630 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.5e-08 64.7 192 25.5
EL10Ac7g17199 Beta vulgaris HOM05D000003 ORTHO05D000007 1.5e-08 64.7 51 45.1
EL10As3g23362 Beta vulgaris HOM05D000003 ORTHO05D000007 1.5e-08 64.7 66 39.4
CANSAT11G0988 Cannabis sativa HOM05D000003 ORTHO05D000007 1.5e-08 64.7 174 22.4
Ah.12g061560 Amaranthus hybridus HOM05D000003 ORTHO05D000007 2.0e-08 64.3 177 28.8
PGSC0003DMG400035899 Solanum tuberosum HOM05D000003 ORTHO05D000007 2.0e-08 64.3 170 24.7
EL10Ac8g19497 Beta vulgaris HOM05D000003 ORTHO05D000007 3.4e-08 63.5 61 39.3
Hund01411 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.4e-08 63.5 98 39.8
Dinv18035 Davidia involucrata HOM05D000003 ORTHO05D000006 4.4e-08 63.2 144 28.5
Dinv23885 Davidia involucrata HOM05D000003 ORTHO05D000007 5.8e-08 62.8 70 38.6
AUR62009362 Chenopodium quinoa HOM05D000522 ORTHO05D000565 7.5e-08 62.4 57 59.6
AUR62023043 Chenopodium quinoa HOM05D000522 ORTHO05D000565 7.5e-08 62.4 57 59.6
Hund03448 Selenicereus undatus HOM05D000522 ORTHO05D000565 7.5e-08 62.4 57 59.6
CANSAT56G3933 Cannabis sativa HOM05D000003 ORTHO05D000007 9.9e-08 62.0 176 22.7
Ah.10g035440 Amaranthus hybridus HOM05D000522 ORTHO05D000565 1.3e-07 61.6 57 56.1
FAN20G1971 Fragaria x ananassa HOM05D000522 ORTHO05D000565 1.3e-07 61.6 44 68.2
Gohir.A05G059500 Gossypium hirsutum HOM05D000522 ORTHO05D000565 1.3e-07 61.6 57 57.9
Gohir.D05G061700 Gossypium hirsutum HOM05D000522 ORTHO05D000565 1.3e-07 61.6 57 57.9
Gorai.009G062800 Gossypium raimondii HOM05D000522 ORTHO05D000565 1.3e-07 61.6 57 57.9
EL10Ac6g13748 Beta vulgaris HOM05D000003 ORTHO05D000007 1.7e-07 61.2 150 24.7
CANSAT11G1056 Cannabis sativa HOM05D000003 ORTHO05D000007 1.7e-07 61.2 165 22.4
CANSAT25G3759 Cannabis sativa HOM05D000003 ORTHO05D000007 1.7e-07 61.2 165 22.4
Carub.0007s0874 Capsella rubella HOM05D000522 ORTHO05D000565 1.7e-07 61.2 54 61.1
Dinv07128 Davidia involucrata HOM05D059363 ORTHO05D045095 1.7e-07 61.2 114 31.6
Nitab4.5_0000960g0200 Nicotiana tabacum HOM05D010714 ORTHO05D000007 1.7e-07 61.2 130 28.5
CANSAT54G1048 Cannabis sativa HOM05D000003 ORTHO05D000007 2.2e-07 60.8 165 22.4
Solyc03g078190.1 Solanum lycopersicum HOM05D015165 ORTHO05D017089 2.2e-07 60.8 68 39.7
Sopen00g009280 Solanum pennellii HOM05D000003 ORTHO05D000004 2.2e-07 60.8 220 24.1
FAN15G2593 Fragaria x ananassa HOM05D000522 ORTHO05D000565 2.9e-07 60.5 44 65.9
THA.LOC104803614 Tarenaya hassleriana HOM05D000522 ORTHO05D000565 2.9e-07 60.5 56 57.1
EL10Ac2g04108 Beta vulgaris HOM05D000522 ORTHO05D000565 3.7e-07 60.1 57 56.1
AUR62043420 Chenopodium quinoa HOM05D000003 ORTHO05D000007 3.7e-07 60.1 141 23.4
Dinv18316 Davidia involucrata HOM05D000003 ORTHO05D000007 3.7e-07 60.1 144 26.4
AL7G20170 Arabidopsis lyrata HOM05D000522 ORTHO05D000565 4.9e-07 59.7 54 59.3
AT4G31810 Arabidopsis thaliana HOM05D000522 ORTHO05D000565 4.9e-07 59.7 54 59.3
EL10Ac1g01519 Beta vulgaris HOM05D000003 ORTHO05D000007 4.9e-07 59.7 46 43.5
CANSAT25G2390 Cannabis sativa HOM05D000003 ORTHO05D011611 4.9e-07 59.7 128 25.0
Sc09g0010630 Simmondsia chinensis HOM05D000522 ORTHO05D000565 4.9e-07 59.7 57 57.9
EL10Ac1g02104 Beta vulgaris HOM05D000003 ORTHO05D011611 6.4e-07 59.3 56 32.1
Cpa.g.sc127.34 Carica papaya HOM05D000522 ORTHO05D000565 6.4e-07 59.3 54 57.4
MELO3C016959.2 Cucumis melo HOM05D000522 ORTHO05D000565 6.4e-07 59.3 57 57.9
EL10Ac6g14716 Beta vulgaris HOM05D000003 ORTHO05D000007 8.3e-07 58.9 61 42.6
Sed0012273 Sechium edule HOM05D000522 ORTHO05D000565 8.3e-07 58.9 73 49.3
Thecc.09G015900 Theobroma cacao HOM05D000522 ORTHO05D000565 8.3e-07 58.9 42 66.7
EL10Ac1g01964 Beta vulgaris HOM05D000003 ORTHO05D000007 1.1e-06 58.5 68 45.6
CARHR239730 Cardamine hirsuta HOM05D000522 ORTHO05D000565 1.1e-06 58.5 54 57.4
Ah.02g122310 Amaranthus hybridus HOM05D000003 ORTHO05D000007 1.4e-06 58.2 155 25.8
Ah.10g026680 Amaranthus hybridus HOM05D000003 ORTHO05D000004 1.4e-06 58.2 140 26.4
Cfa013059 Carpinus fangiana HOM05D006934 ORTHO05D008743 1.4e-06 58.2 57 56.1
Manes.16G129600 Manihot esculenta HOM05D000522 ORTHO05D000565 1.4e-06 58.2 73 47.9
PGR044G0648 Punica granatum HOM05D000522 ORTHO05D000565 1.4e-06 58.2 73 47.9
CANSAT35G0925 Cannabis sativa HOM05D000003 ORTHO05D000007 1.9e-06 57.8 79 36.7
VMungo0647G1940 Vigna mungo HOM05D000522 ORTHO05D000565 1.9e-06 57.8 73 49.3
Aa31LG2G18430 Aethionema arabicum HOM05D000522 ORTHO05D000565 2.4e-06 57.4 54 57.4
EL10Ac7g17749 Beta vulgaris HOM05D000003 ORTHO05D000007 2.4e-06 57.4 114 31.6
EL10As3g23356 Beta vulgaris HOM05D000003 ORTHO05D000007 2.4e-06 57.4 56 33.9
CANSAT25G2441 Cannabis sativa HOM05D000003 ORTHO05D000007 2.4e-06 57.4 172 23.3
CAN.G1506.1 Capsicum annuum HOM05D000003 ORTHO05D000007 2.4e-06 57.4 118 28.0
CAN.G551.108 Capsicum annuum HOM05D002280 ORTHO05D011611 2.4e-06 57.4 59 35.6
CsaV3_4G036550 Cucumis sativus L. HOM05D000522 ORTHO05D000565 2.4e-06 57.4 57 56.1
FvH4_2g41110 Fragaria vesca HOM05D000522 ORTHO05D000565 2.4e-06 57.4 46 65.2
Dinv19948 Davidia involucrata HOM05D000003 ORTHO05D000007 3.2e-06 57.0 78 30.8
Medtr1g014040 Medicago truncatula HOM05D000522 ORTHO05D000565 3.2e-06 57.0 79 45.6
QL02p018891 Quercus lobata HOM05D000522 ORTHO05D000565 3.2e-06 57.0 42 66.7
RcHm_v2.0_Chr6g0299431 Rosa chinensis HOM05D000522 ORTHO05D000565 3.2e-06 57.0 42 66.7
EL10Ac6g14808 Beta vulgaris HOM05D000003 ORTHO05D000007 4.1e-06 56.6 147 24.5
COL.COLO4_18948 Corchorus olitorius HOM05D000522 ORTHO05D000565 4.1e-06 56.6 56 53.6
Haze_21419 Corylus avellana HOM05D000522 ORTHO05D000565 4.1e-06 56.6 68 48.5
Thhalv10025339m.g Eutrema salsugineum HOM05D000522 ORTHO05D000565 4.1e-06 56.6 54 55.6
FAN27G1283 Fragaria x ananassa HOM05D000522 ORTHO05D000565 4.1e-06 56.6 73 47.9
Lj5g0011513 Lotus japonicus HOM05D000522 ORTHO05D000565 4.1e-06 56.6 73 49.3
Phvul.001G041800 Phaseolus vulgaris HOM05D000522 ORTHO05D000565 4.1e-06 56.6 73 47.9
Sopen00g007850 Solanum pennellii HOM05D000003 ORTHO05D000004 4.1e-06 56.6 219 24.7
Sopen12g026830 Solanum pennellii HOM05D000003 ORTHO05D000007 4.1e-06 56.6 229 23.6
PGSC0003DMG400036658 Solanum tuberosum HOM05D015165 ORTHO05D009935 4.1e-06 56.6 57 43.9
CANSAT11G0663 Cannabis sativa HOM05D000004 ORTHO05D000034 5.4e-06 56.2 44 43.2
Dinv10465 Davidia involucrata HOM05D000003 ORTHO05D000007 5.4e-06 56.2 94 28.7
Eucgr.C02527 Eucalyptus grandis HOM05D000522 ORTHO05D000565 5.4e-06 56.2 57 54.4
Eucgr.C02613 Eucalyptus grandis HOM05D000522 ORTHO05D000565 5.4e-06 56.2 57 54.4
Nitab4.5_0000151g0420 Nicotiana tabacum HOM05D000003 ORTHO05D011611 5.4e-06 56.2 43 48.8
Nitab4.5_0004011g0050 Nicotiana tabacum HOM05D000003 ORTHO05D011611 5.4e-06 56.2 47 40.4
Psat6g026880 Pisum sativum HOM05D000522 ORTHO05D000565 5.4e-06 56.2 79 45.6
Solyc10g075080.1 Solanum lycopersicum HOM05D015165 ORTHO05D011611 5.4e-06 56.2 68 30.9
Sopen03g013440 Solanum pennellii HOM05D000003 ORTHO05D000007 5.4e-06 56.2 204 20.6
Sopen07g022300 Solanum pennellii HOM05D000003 ORTHO05D000007 5.4e-06 56.2 163 25.2
TPR.G38835 Trifolium pratense HOM05D000522 ORTHO05D000565 5.4e-06 56.2 79 45.6
CANSAT78G1658 Cannabis sativa HOM05D000003 ORTHO05D000007 7.1e-06 55.8 44 43.2
Ca_13069_v3 Cicer arietinum L. HOM05D000522 ORTHO05D000565 7.1e-06 55.8 79 45.6
Duzib168G2113 Durio zibethinus HOM05D000522 ORTHO05D000565 7.1e-06 55.8 42 64.3
Gohir.A07G032800 Gossypium hirsutum HOM05D000522 ORTHO05D000565 7.1e-06 55.8 42 64.3
Gohir.D07G036100 Gossypium hirsutum HOM05D000522 ORTHO05D000565 7.1e-06 55.8 42 64.3
Gorai.001G038000 Gossypium raimondii HOM05D000522 ORTHO05D000565 7.1e-06 55.8 42 64.3
PGSC0003DMG400035713 Solanum tuberosum HOM05D000003 ORTHO05D000007 7.1e-06 55.8 59 42.4
TWI32G0930 Tripterygium wilfordii HOM05D000522 ORTHO05D000565 7.1e-06 55.8 43 62.8
Actinidia10521 Actinidia chinensis HOM05D000522 ORTHO05D000565 9.2e-06 55.5 42 64.3
EL10Ac1g02040 Beta vulgaris HOM05D000003 ORTHO05D000007 9.2e-06 55.5 49 32.7
EL10Ac4g08483 Beta vulgaris HOM05D000003 ORTHO05D000007 9.2e-06 55.5 158 24.1
EL10Ac5g11879 Beta vulgaris HOM05D000003 ORTHO05D000007 9.2e-06 55.5 58 34.5
CSS0042873 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D000565 9.2e-06 55.5 42 64.3
CSS0047706 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D000565 9.2e-06 55.5 42 64.3
CiPaw.07G230100 Carya illinoinensis HOM05D000522 ORTHO05D000565 9.2e-06 55.5 42 64.3
Rhsim02G0213100 Rhododendron simsii HOM05D000522 ORTHO05D000565 9.2e-06 55.5 42 64.3
Sopen00g005620 Solanum pennellii HOM05D000003 ORTHO05D000004 9.2e-06 55.5 171 26.3
TAR626G1465 Trochodendron aralioides HOM05D000522 ORTHO05D000565 9.2e-06 55.5 42 64.3
vmacro11242 Vaccinium macrocarpon HOM05D000522 ORTHO05D000565 9.2e-06 55.5 42 64.3


User provided reference genes

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