Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.3e-177 626.3 322 100.0
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.6e-103 380.2 320 63.8
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 9.7e-101 370.9 323 62.8
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.0e-97 360.9 301 64.5
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 2.5e-96 356.3 305 63.3
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 7.2e-96 354.8 313 61.3
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 3.0e-94 349.4 300 63.7
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 2.8e-92 342.8 316 61.4
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.4e-91 339.7 306 60.8
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.6e-90 337.0 311 60.1
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.7e-90 336.3 324 58.6
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 4.5e-90 335.5 307 61.2
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 8.5e-89 331.3 310 59.0
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.9e-88 330.1 315 58.7
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 1.0e-86 324.3 331 59.8
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 1.2e-85 320.9 314 58.9
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 1.5e-85 320.5 328 56.1
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 3.4e-85 319.3 328 55.8
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 4.4e-85 318.9 327 55.4
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.3e-84 317.4 327 55.0
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 6.3e-84 315.1 302 58.3
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 8.3e-84 314.7 325 55.7
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 4.1e-83 312.4 305 57.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 5.4e-83 312.0 324 58.3
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 7.0e-83 311.6 299 58.5
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 9.1e-83 311.2 323 57.3
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 1.2e-82 310.8 334 55.7
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.6e-82 310.5 300 57.3
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 4.5e-82 308.9 310 59.7
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 5.9e-82 308.5 318 56.9
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 5.9e-82 308.5 344 52.9
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 2.2e-81 306.6 303 58.4
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 2.2e-81 306.6 312 55.4
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 2.9e-81 306.2 301 57.1
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 6.5e-81 305.1 313 57.2
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 1.5e-80 303.9 318 55.7
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.9e-80 303.5 304 58.9
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 3.2e-80 302.8 303 56.8
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 4.2e-80 302.4 315 54.9
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 5.5e-80 302.0 306 57.2
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.6e-79 300.4 298 60.1
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.7e-79 299.7 315 56.2
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.7e-79 298.9 299 59.5
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.1e-79 298.5 298 59.7
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 1.4e-78 297.4 304 58.2
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.3e-78 296.6 305 57.4
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.3e-78 296.6 300 56.0
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 4.0e-78 295.8 301 56.5
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 4.0e-78 295.8 308 56.8
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 5.2e-78 295.4 300 56.3
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 6.8e-78 295.0 301 55.1
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 4.4e-77 292.4 302 55.0
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.7e-76 290.4 301 55.5
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 2.8e-76 289.7 309 54.7
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 3.7e-76 289.3 317 56.5
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 8.3e-76 288.1 325 52.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 8.3e-76 288.1 302 54.6
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.1e-75 287.7 328 52.7
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 2.4e-75 286.6 320 51.9
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 2.4e-75 286.6 298 55.0
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 4.1e-75 285.8 300 54.0
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 5.4e-75 285.4 308 57.8
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 9.2e-75 284.6 325 52.3
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.6e-74 283.9 332 52.1
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 2.0e-74 283.5 328 53.0
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 4.5e-74 282.3 320 51.6
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 4.5e-74 282.3 304 55.9
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.9e-73 279.6 310 56.1
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 6.6e-73 278.5 303 55.8
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.1e-72 277.7 318 51.9
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 1.1e-72 277.7 297 54.2
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.9e-72 276.9 304 51.3
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.5e-72 276.6 304 53.6
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 5.6e-72 275.4 254 61.0
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 1.2e-71 274.2 303 51.8
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 4.7e-71 272.3 312 52.9
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.3e-70 270.0 304 53.0
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 4.0e-70 269.2 281 54.1
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 4.4e-69 265.8 329 53.5
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 7.5e-69 265.0 286 54.2
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.3e-68 264.2 306 51.3
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 2.9e-68 263.1 308 49.7
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 6.4e-68 261.9 318 49.4
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.8e-67 260.4 306 52.6
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 7.3e-64 248.4 390 41.5
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 9.5e-64 248.1 332 48.8
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.1e-63 246.9 344 48.0
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 2.8e-63 246.5 308 50.0
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 3.6e-63 246.1 329 49.5
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 3.6e-63 246.1 235 58.3
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.4e-62 244.2 352 46.6
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 4.0e-62 242.7 331 49.2
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 5.2e-62 242.3 331 49.2
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.9e-62 241.5 356 45.8
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 2.2e-60 236.9 331 48.0
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 3.7e-60 236.1 331 48.0
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 3.7e-60 236.1 331 48.0
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-58 231.1 351 45.3
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.9e-56 223.8 248 54.8
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 3.3e-56 223.0 312 48.7
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 7.3e-56 221.9 307 46.6
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.1e-55 220.3 307 45.9
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.4e-54 217.6 301 45.2
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 3.1e-54 216.5 306 49.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 6.8e-54 215.3 299 44.8
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.0e-53 213.8 306 44.8
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.6e-53 213.4 279 47.3
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.7e-52 210.7 302 47.7
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 2.9e-52 209.9 309 44.7
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 3.7e-52 209.5 311 46.0
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.2e-45 188.0 205 49.3
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 4.1e-43 179.5 143 62.2
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 4.6e-42 176.0 171 59.1
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 6.0e-42 175.6 178 55.6
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.9e-40 170.6 299 40.8
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.2e-39 167.9 248 45.6
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 3.6e-39 166.4 251 46.6
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 4.7e-39 166.0 327 41.9
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 1.4e-38 164.5 147 59.2
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 6.9e-38 162.2 363 36.6
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 8.9e-38 161.8 187 50.3
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 9.9e-37 158.3 297 42.4
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 8.4e-36 155.2 153 53.6
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.9e-35 154.1 317 41.0
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.2e-34 151.4 299 39.5
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.1e-34 150.6 155 51.6
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.1e-34 150.6 115 66.1
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 7.8e-34 148.7 196 46.9
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 3.0e-33 146.7 152 55.9
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 9.6e-32 141.7 117 63.2
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.4e-30 137.1 117 58.1
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 2.4e-30 137.1 147 53.1
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 3.1e-30 136.7 288 38.5
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 5.8e-29 132.5 290 42.4
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.7e-28 131.0 290 41.4
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.7e-28 131.0 290 42.1
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 1.1e-27 128.3 105 62.9
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 6.0e-26 122.5 160 45.6
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 1.8e-25 120.9 158 43.7
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 1.8e-25 120.9 160 45.6
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 3.0e-25 120.2 160 45.6
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 9.6e-24 115.2 248 37.1
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.8e-22 110.9 126 57.1
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 4.5e-21 106.3 131 46.6
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.7e-20 104.4 109 58.7
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 2.9e-20 103.6 102 56.9
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 4.8e-15 86.3 91 47.3
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 5.3e-14 82.8 56 71.4
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 6.9e-14 82.4 71 57.7
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-11 75.1 158 39.9
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 2.5e-11 73.9 55 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 2.1e-10 70.9 174 37.9
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 3.0e-09 67.0 56 53.6
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 5.1e-09 66.2 73 58.9
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 4.3e-08 63.2 197 30.5
CARHR164030 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.3e-07 59.3 56 62.5
FAN07G2658 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.3e-07 59.3 38 73.7


User provided reference genes

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