Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 0.0e+00 1363.2 679 100.0
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 3.9e-301 1037.7 676 80.9
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 8.3e-211 737.6 622 64.6
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 1.4e-205 720.3 631 62.4
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 1.2e-201 707.2 634 59.1
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 6.0e-201 704.9 593 62.6
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 1.3e-200 703.7 601 62.1
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 2.3e-200 703.0 634 59.8
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 4.3e-199 698.7 636 59.0
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 4.3e-199 698.7 635 59.1
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.6e-198 696.8 606 63.4
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 1.6e-198 696.8 590 64.4
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 1.1e-197 694.1 634 58.5
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 8.9e-197 691.0 634 57.1
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 2.0e-196 689.9 629 59.6
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 2.0e-196 689.9 629 59.6
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 2.0e-196 689.9 634 58.2
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 4.4e-196 688.7 591 61.9
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 9.9e-196 687.6 630 58.4
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 1.7e-195 686.8 634 58.5
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 1.7e-195 686.8 633 58.0
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 2.9e-195 686.0 591 61.3
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 2.9e-195 686.0 638 57.8
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 4.9e-195 685.3 639 57.9
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 4.9e-195 685.3 633 58.3
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 4.9e-195 685.3 632 57.9
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 6.4e-195 684.9 591 60.9
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 8.4e-195 684.5 606 59.7
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 8.4e-195 684.5 636 58.3
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 1.1e-194 684.1 643 57.5
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 1.4e-194 683.7 590 61.5
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 1.4e-194 683.7 636 57.2
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 1.9e-194 683.3 592 61.0
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 4.2e-194 682.2 633 58.1
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 7.1e-194 681.4 612 59.0
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 9.2e-194 681.0 642 57.6
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 1.2e-193 680.6 590 60.3
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 1.2e-193 680.6 638 57.4
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 2.1e-193 679.9 615 59.0
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 4.6e-193 678.7 631 57.5
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 1.0e-192 677.6 599 59.8
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.7e-192 676.8 631 58.5
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 1.7e-192 676.8 598 59.5
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 1.7e-192 676.8 599 59.6
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 2.3e-192 676.4 629 58.2
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 3.9e-192 675.6 610 58.9
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 1.1e-191 674.1 633 57.8
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 3.3e-191 672.5 603 59.9
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 5.6e-191 671.8 603 59.9
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 7.3e-191 671.4 603 59.9
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 9.6e-191 671.0 616 57.5
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 9.6e-191 671.0 634 57.7
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 1.3e-190 670.6 603 59.7
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 1.3e-190 670.6 595 59.7
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 1.1e-189 667.5 670 55.2
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 4.0e-189 665.6 679 53.9
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 9.0e-189 664.5 630 57.3
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 1.5e-188 663.7 606 58.4
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 1.5e-188 663.7 591 58.9
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 3.4e-188 662.5 639 56.8
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 5.8e-188 661.8 640 56.9
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 7.6e-188 661.4 591 59.6
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 6.4e-187 658.3 601 58.2
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 7.1e-186 654.8 592 58.6
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 1.2e-185 654.1 636 56.3
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 2.3e-184 649.8 600 58.0
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 1.5e-183 647.1 598 59.0
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 9.6e-183 644.4 607 56.7
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 1.1e-181 641.0 623 57.0
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 2.4e-181 639.8 617 55.6
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 1.7e-179 633.6 595 57.8
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 2.2e-179 633.3 608 56.2
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.9e-179 632.9 560 61.1
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 2.4e-178 629.8 643 54.6
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 5.4e-178 628.6 598 57.5
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 7.1e-178 628.2 602 57.0
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 1.2e-177 627.5 616 55.8
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 4.6e-177 625.5 658 53.3
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 8.7e-176 621.3 597 56.4
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 1.5e-175 620.5 610 56.1
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 1.9e-175 620.2 587 57.6
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 4.3e-175 619.0 588 57.0
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 7.4e-175 618.2 608 55.6
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 3.7e-174 615.9 590 56.4
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 8.4e-171 604.7 634 52.5
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 6.0e-169 598.6 567 57.0
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 1.5e-167 594.0 633 52.9
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 1.2e-161 574.3 591 53.6
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 1.8e-160 570.5 616 50.5
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 1.2e-153 547.7 545 55.2
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 2.5e-151 540.0 527 55.6
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 3.9e-144 516.2 520 55.0
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 8.8e-144 515.0 482 57.3
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 5.3e-141 505.8 482 56.4
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 2.2e-131 473.8 359 66.3
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.2e-131 473.8 657 45.8
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 2.9e-131 473.4 360 67.2
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 4.2e-130 469.5 369 65.6
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 2.9e-115 420.2 551 43.6
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 1.7e-110 404.4 577 43.5
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 4.9e-102 376.3 313 61.7
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 9.2e-93 345.5 461 45.1
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 7.8e-92 342.4 301 55.8
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 5.1e-91 339.7 271 64.9
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 4.7e-89 333.2 470 42.8
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 8.9e-88 328.9 292 59.2
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.1e-85 322.0 200 76.5
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 7.1e-85 319.3 265 61.9
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 2.1e-76 291.2 325 51.7
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 1.1e-74 285.4 581 33.7
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 1.4e-64 251.9 187 67.9
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 2.5e-58 231.1 613 29.7
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 1.0e-51 209.1 131 74.0
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 3.1e-48 197.6 208 53.8
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 5.3e-48 196.8 134 67.9
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.3e-43 182.2 174 56.3
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 1.8e-43 181.8 146 63.0
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 4.3e-42 177.2 111 76.6
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 7.2e-29 133.3 103 60.2
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.8e-25 121.3 185 42.7
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 1.8e-24 118.6 527 26.4
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 4.1e-24 117.5 69 82.6
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 1.2e-23 115.9 81 71.6
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 1.3e-22 112.5 532 25.9
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.7e-20 104.8 60 76.7
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 2.3e-19 101.7 58 81.0
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 2.4e-16 91.7 584 23.6
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 1.9e-13 82.0 56 76.8
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 4.4e-10 70.9 43 74.4
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 9.8e-10 69.7 50 64.0
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 4.1e-08 64.3 42 76.2
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 4.5e-07 60.8 121 30.6
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 1.7e-06 58.9 36 69.4
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 8.5e-06 56.6 265 22.3


User provided reference genes

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