Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.4e-242 843.2 667 100.0
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 6.7e-104 382.5 713 48.9
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.9e-103 380.9 713 51.1
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 4.2e-90 336.7 705 49.6
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 3.6e-89 333.6 679 44.6
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 4.5e-84 316.6 602 49.7
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 3.1e-77 293.9 626 52.2
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 9.1e-77 292.4 645 46.8
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.6e-76 290.8 438 53.2
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.9e-74 284.6 685 42.6
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 1.8e-72 278.1 636 44.2
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 3.3e-71 273.9 632 40.8
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 5.7e-71 273.1 636 50.3
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 1.3e-70 271.9 626 54.8
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 4.1e-69 266.9 588 38.1
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 9.1e-69 265.8 702 48.1
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.9e-67 260.8 481 44.5
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 1.5e-66 258.5 485 43.9
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 4.2e-66 256.9 573 52.4
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.7e-65 254.2 485 44.5
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 8.0e-65 252.7 615 53.5
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 4.1e-61 240.4 627 44.8
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.6e-60 238.4 643 43.7
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 4.5e-60 236.9 623 49.9
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 3.8e-59 233.8 685 47.0
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.9e-58 231.5 621 50.2
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 5.5e-58 229.9 634 38.3
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 7.2e-58 229.6 429 36.8
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 1.2e-57 228.8 434 47.2
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.7e-57 226.9 409 36.4
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 3.0e-56 224.2 628 40.1
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 3.0e-56 224.2 675 46.5
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 8.8e-56 222.6 605 41.2
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 3.4e-55 220.7 428 47.9
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 5.7e-55 219.9 684 48.4
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 5.7e-55 219.9 418 48.3
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 7.5e-55 219.5 465 49.0
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.2e-54 218.0 409 36.2
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 2.8e-54 217.6 686 40.4
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 8.3e-54 216.1 641 46.6
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 7.0e-53 213.0 323 57.0
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.2e-52 212.2 678 45.6
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 2.7e-52 211.1 634 46.5
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 7.8e-52 209.5 434 39.9
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.0e-51 209.1 577 50.6
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 1.0e-51 209.1 413 45.0
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.0e-51 209.1 427 40.5
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.9e-50 204.9 680 35.4
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 2.5e-50 204.5 448 43.1
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 7.3e-50 203.0 473 35.7
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 7.3e-50 203.0 632 46.4
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.1e-49 199.9 620 41.0
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 5.2e-48 196.8 426 38.5
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 6.8e-48 196.4 684 48.0
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 1.2e-47 195.7 584 47.1
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 1.5e-47 195.3 607 42.7
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 2.0e-47 194.9 483 39.3
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 2.6e-47 194.5 632 55.4
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 2.6e-47 194.5 380 45.8
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 3.4e-47 194.1 678 32.6
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 7.5e-47 193.0 625 55.4
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 9.8e-47 192.6 421 49.2
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.3e-46 192.2 479 32.6
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 3.7e-46 190.7 641 47.7
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 6.4e-46 189.9 441 46.3
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 8.3e-46 189.5 345 49.9
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 1.4e-45 188.7 630 47.5
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 3.2e-45 187.6 638 46.9
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 4.6e-44 183.7 642 42.5
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 7.8e-44 183.0 437 44.2
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 8.6e-43 179.5 629 36.1
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.9e-42 178.3 579 30.6
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.9e-42 178.3 481 30.6
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 3.3e-42 177.6 655 47.2
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 9.5e-42 176.0 440 41.4
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 3.6e-41 174.1 423 41.8
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 4.7e-41 173.7 411 45.7
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 4.0e-40 170.6 437 46.9
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 8.9e-40 169.5 590 34.4
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 1.2e-39 169.1 637 42.5
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 2.0e-39 168.3 598 41.3
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 7.5e-39 166.4 433 44.8
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 7.5e-39 166.4 433 44.8
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 7.5e-39 166.4 433 44.8
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.7e-38 165.2 630 42.4
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 6.4e-38 163.3 436 42.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 3.2e-37 161.0 421 40.9
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 4.1e-37 160.6 477 37.7
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.0e-36 158.3 636 45.6
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 6.0e-36 156.8 396 36.9
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 1.0e-35 156.0 438 38.4
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 3.0e-35 154.5 444 38.7
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 3.0e-35 154.5 678 36.6
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 5.0e-35 153.7 393 45.8
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-34 152.5 632 52.8
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.9e-34 151.8 427 40.5
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 4.3e-34 150.6 332 34.0
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 1.6e-33 148.7 632 36.7
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 2.1e-33 148.3 364 39.3
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 8.1e-33 146.4 426 40.4
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 4.0e-32 144.1 430 46.5
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 9.8e-31 139.4 319 46.1
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.7e-30 138.7 418 26.1
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 2.9e-30 137.9 439 37.8
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.9e-30 137.9 341 44.0
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 2.9e-30 137.9 439 37.8
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 6.4e-30 136.7 481 37.2
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.2e-28 132.5 397 44.1
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 1.3e-27 129.0 481 35.6
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 1.7e-27 128.6 444 38.5
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 3.9e-27 127.5 465 28.0
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 3.9e-27 127.5 388 26.3
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 6.6e-27 126.7 479 37.4
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 1.1e-26 125.9 419 41.8
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 1.9e-26 125.2 641 44.5
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 9.5e-26 122.9 480 36.0
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 2.8e-25 121.3 586 31.1
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 1.3e-22 112.5 416 41.6
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 2.9e-22 111.3 364 40.4
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.9e-22 111.3 222 36.5
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.8e-22 110.9 632 49.7
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 8.4e-22 109.8 332 42.2
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 1.1e-21 109.4 149 45.0
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 1.9e-21 108.6 201 39.3
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.9e-21 108.6 698 30.5
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 9.2e-21 106.3 628 44.6
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.7e-20 104.8 115 50.4
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 6.0e-20 103.6 331 29.9
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 6.0e-20 103.6 599 30.7
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 2.3e-19 101.7 625 32.3
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.9e-19 100.9 594 21.9
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 6.6e-19 100.1 469 40.1
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 1.1e-18 99.4 645 36.6
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 5.6e-18 97.1 108 51.9
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 7.3e-18 96.7 154 42.2
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 2.2e-14 85.1 325 30.8
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.1e-13 82.8 239 26.4
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 1.6e-12 79.0 332 41.3
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 1.3e-11 75.9 373 23.9
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 3.9e-11 74.3 444 34.2
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 3.3e-10 71.2 114 38.6
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 4.8e-09 67.4 414 24.6
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 5.3e-08 63.9 382 23.3
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 1.5e-07 62.4 116 36.2
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.9e-06 58.2 309 36.9


User provided reference genes

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