Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund00433 Selenicereus undatus HOM05D007259 ORTHO05D009158 2.0e-97 359.0 165 100.0
PGR102G1952 Punica granatum HOM05D007259 ORTHO05D009158 4.7e-83 311.2 165 86.7
Sc12g0008330 Simmondsia chinensis HOM05D007259 ORTHO05D009158 2.3e-82 308.9 161 82.0
Eucgr.F03958 Eucalyptus grandis HOM05D007259 ORTHO05D009158 8.8e-82 307.0 165 84.8
Ah.01g006970 Amaranthus hybridus HOM05D007259 ORTHO05D009158 1.2e-81 306.6 162 84.0
Actinidia36875 Actinidia chinensis HOM05D007259 ORTHO05D009158 2.6e-81 305.4 162 86.4
CANSAT56G1631 Cannabis sativa HOM05D007259 ORTHO05D009158 2.2e-80 302.4 165 84.2
Gohir.D06G118700 Gossypium hirsutum HOM05D007259 ORTHO05D009158 2.8e-80 302.0 165 84.2
Gorai.010G136500 Gossypium raimondii HOM05D007259 ORTHO05D009158 3.7e-80 301.6 165 84.2
EL10Ac9g22206 Beta vulgaris HOM05D007259 ORTHO05D009158 1.1e-79 300.1 166 82.5
Rhsim08G0205600 Rhododendron simsii HOM05D007259 ORTHO05D009158 2.4e-79 298.9 161 83.9
Gohir.A06G114200 Gossypium hirsutum HOM05D007259 ORTHO05D009158 3.1e-79 298.5 165 83.0
Ciclev10026584m.g Citrus clementina HOM05D007259 ORTHO05D009158 4.1e-79 298.1 165 81.8
GSVIVG01015956001 Vitis vinifera HOM05D007259 ORTHO05D009158 4.1e-79 298.1 162 84.0
Dinv21412 Davidia involucrata HOM05D007259 ORTHO05D009158 5.4e-79 297.7 165 83.6
RcHm_v2.0_Chr2g0132951 Rosa chinensis HOM05D007259 ORTHO05D009158 5.4e-79 297.7 165 83.0
FvH4_6g28630 Fragaria vesca HOM05D007259 ORTHO05D009158 9.1e-79 297.0 161 83.9
FAN14G4954 Fragaria x ananassa HOM05D007259 ORTHO05D009158 9.1e-79 297.0 161 83.9
CSS0004525 Camellia sinensis var. sinensis HOM05D007259 ORTHO05D009158 1.6e-78 296.2 162 85.2
PSO170G4635 Papaver somniferum HOM05D007259 ORTHO05D009158 2.7e-78 295.4 166 81.9
Medtr4g007095 Medicago truncatula HOM05D007259 ORTHO05D009158 5.9e-78 294.3 162 82.7
FAN05G5272 Fragaria x ananassa HOM05D007259 ORTHO05D009158 1.3e-77 293.1 161 82.6
PSO017G0751 Papaver somniferum HOM05D007259 ORTHO05D009158 1.3e-77 293.1 166 81.9
Potri.001G044200 Populus trichocarpa HOM05D007259 ORTHO05D009158 1.3e-77 293.1 165 78.8
Atru.chr10.2413 Acer truncatum HOM05D007259 ORTHO05D009158 2.9e-77 292.0 165 78.8
QL05p036089 Quercus lobata HOM05D007259 ORTHO05D009158 2.9e-77 292.0 163 82.8
Sabra01G0030500 Salix brachista HOM05D007259 ORTHO05D009158 2.9e-77 292.0 161 80.1
Lsat_1_v5_gn_5_8261 Lactuca sativa HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 80.0
Lj5A81T88 Lonicera japonica HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 79.4
Prupe.3G098300 Prunus persica HOM05D007259 ORTHO05D009158 5.0e-77 291.2 165 81.2
TPR.G23079 Trifolium pratense HOM05D007259 ORTHO05D009158 5.0e-77 291.2 162 80.9
Carub.0002s2668 Capsella rubella HOM05D007259 ORTHO05D009158 1.1e-76 290.0 165 81.2
Duzib235G0063 Durio zibethinus HOM05D007259 ORTHO05D009158 1.9e-76 289.3 165 79.4
TWI75G0585 Tripterygium wilfordii HOM05D007259 ORTHO05D009158 2.5e-76 288.9 165 78.8
VMungo0331G0163 Vigna mungo HOM05D007259 ORTHO05D009158 2.5e-76 288.9 162 80.9
Aa31LG4G1140 Aethionema arabicum HOM05D007259 ORTHO05D009158 3.2e-76 288.5 161 80.7
CAN.G1932.2 Capsicum annuum HOM05D007259 ORTHO05D009158 3.2e-76 288.5 165 78.2
Cfa001880 Carpinus fangiana HOM05D007259 ORTHO05D009158 4.2e-76 288.1 161 80.7
Thhalv10019243m.g Eutrema salsugineum HOM05D007259 ORTHO05D009158 4.2e-76 288.1 165 80.0
Thecc.06G041800 Theobroma cacao HOM05D007259 ORTHO05D009158 5.5e-76 287.7 165 77.6
Peaxi162Scf00207g00430 Petunia axillaris HOM05D007259 ORTHO05D009158 7.2e-76 287.3 165 78.2
Sp5g34900 Schrenkiella parvula HOM05D007259 ORTHO05D009158 9.4e-76 287.0 165 80.0
BcaC03g15926 Brassica carinata HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 78.8
BolC2t09700H Brassica oleracea HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 78.8
Sopen06g025720 Solanum pennellii HOM05D007259 ORTHO05D009158 1.2e-75 286.6 165 77.6
Cc04_g05120 Coffea canephora HOM05D007259 ORTHO05D009158 2.1e-75 285.8 165 78.2
C02p36870 Brassica napus HOM05D007259 ORTHO05D009158 2.7e-75 285.4 165 78.2
Glyma.08G218900 Glycine max HOM05D007259 ORTHO05D009158 2.7e-75 285.4 165 78.2
CiPaw.01G254600 Carya illinoinensis HOM05D007259 ORTHO05D009158 3.6e-75 285.0 161 81.4
ClCG10G012930 Citrullus lanatus HOM05D007259 ORTHO05D009158 3.6e-75 285.0 165 78.8
Manes.04G102300 Manihot esculenta HOM05D007259 ORTHO05D009158 3.6e-75 285.0 161 80.7
FAN09G1653 Fragaria x ananassa HOM05D007259 ORTHO05D009158 6.1e-75 284.3 160 81.9
Oeu060130.1 Olea europaea HOM05D007259 ORTHO05D009158 6.1e-75 284.3 165 77.0
TPR.G23090 Trifolium pratense HOM05D007259 ORTHO05D009158 6.1e-75 284.3 162 80.2
BcaB05g25221 Brassica carinata HOM05D007259 ORTHO05D009158 8.0e-75 283.9 165 78.2
A02p23100 Brassica napus HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 78.2
BraA02t07308Z Brassica rapa HOM05D007259 ORTHO05D009158 1.0e-74 283.5 165 78.2
Lalb_Chr01g0012071 Lupinus albus HOM05D007259 ORTHO05D009158 2.3e-74 282.3 162 78.4
Solyc06g068470.3 Solanum lycopersicum HOM05D007259 ORTHO05D009158 3.0e-74 282.0 165 76.4
HanXRQChr05g0153761 Helianthus annuus HOM05D007259 ORTHO05D009158 4.0e-74 281.6 165 77.6
Lj3g0012869 Lotus japonicus HOM05D007259 ORTHO05D009158 6.8e-74 280.8 162 77.8
Medtr4g007090 Medicago truncatula HOM05D007259 ORTHO05D009158 6.8e-74 280.8 162 78.4
PGSC0003DMG400028490 Solanum tuberosum HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 75.2
THA.LOC104812409 Tarenaya hassleriana HOM05D007259 ORTHO05D009158 1.5e-73 279.6 165 78.2
SGA_v2.0_scaffold26G11300 Striga asiatica HOM05D007259 ORTHO05D009158 2.0e-73 279.3 162 77.8
AT1G80860 Arabidopsis thaliana HOM05D007259 ORTHO05D009158 4.4e-73 278.1 165 78.2
CARHR073610 Cardamine hirsuta HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 79.4
CsaV3_3G032790 Cucumis sativus L. HOM05D007259 ORTHO05D009158 5.7e-73 277.7 165 77.0
Nn8g39898 Nelumbo nucifera HOM05D007259 ORTHO05D009158 9.8e-73 276.9 165 75.8
MSTRG.4677 Avicennia marina HOM05D007259 ORTHO05D009158 1.3e-72 276.6 165 77.0
AL2G40530 Arabidopsis lyrata HOM05D007259 ORTHO05D009158 1.7e-72 276.2 165 78.2
Phvul.010G161400 Phaseolus vulgaris HOM05D007259 ORTHO05D009158 6.3e-72 274.2 162 75.3
Psat7g260280 Pisum sativum HOM05D007259 ORTHO05D009158 3.5e-70 268.5 158 78.5
SalBow6G4962 Salvia bowleyana HOM05D007259 ORTHO05D009158 3.5e-70 268.5 164 72.6
Sed0006537 Sechium edule HOM05D007259 ORTHO05D009158 1.7e-69 266.2 165 73.9
Migut.D01126 Erythranthe guttata HOM05D007259 ORTHO05D009158 4.3e-68 261.5 162 73.5
Nitab4.5_0008962g0030 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.0e-66 256.9 144 79.2
MBI15_g08512_MAGBIO Magnolia biondii HOM05D007259 ORTHO05D009158 3.4e-65 251.9 162 70.4
BcaB05g25224 Brassica carinata HOM05D007259 ORTHO05D009158 2.4e-63 245.7 165 72.7
Os02g0612100 Oryza sativa ssp. japonica HOM05D007259 ORTHO05D009158 2.7e-62 242.3 160 70.0
Zm00001eb184520 Zea mays HOM05D007259 ORTHO05D009158 2.7e-62 242.3 157 70.1
Haze_16667 Corylus avellana HOM05D007259 ORTHO05D009158 6.6e-61 237.7 258 49.6
unitig_60.g25615 Utricularia gibba HOM05D007259 ORTHO05D009158 2.5e-60 235.7 202 58.9
ECA246G0776 Erigeron canadensis HOM05D007259 ORTHO05D009158 1.7e-56 223.0 126 81.7
Potri.003G182400 Populus trichocarpa HOM05D007259 ORTHO05D009158 3.2e-55 218.8 117 83.8
CDE12G0386 Ceratophyllum demersum HOM05D007259 ORTHO05D009158 2.3e-53 212.6 140 70.0
HPP92_010735 Vanilla planifolia HOM05D007259 ORTHO05D009158 2.3e-53 212.6 156 62.2
SEGI_39537 Sequoiadendron giganteum HOM05D007259 ORTHO05D009158 6.8e-50 201.1 155 60.0
DCAR_021369 Daucus carota HOM05D007259 ORTHO05D009158 1.2e-49 200.3 108 85.2
SMO141G0127 Selaginella moellendorffii HOM05D007259 ORTHO05D009158 1.3e-48 196.8 159 57.2
AagrBONN_evm.TU.Sc2ySwM_117.1157 Anthoceros agrestis HOM05D007259 ORTHO05D009158 3.2e-47 192.2 159 56.6
Pp3c6_3720 Physcomitrium patens HOM05D007259 ORTHO05D009158 2.3e-45 186.0 159 56.0
MD17G1223400 Malus domestica HOM05D007259 ORTHO05D009158 5.1e-37 158.3 83 86.7
Glyma.07G022900 Glycine max HOM05D007259 ORTHO05D009158 1.5e-36 156.8 83 84.3
Aqoxy2G00331 Aquilegia oxysepala HOM05D001307 ORTHO05D001158 1.9e-36 156.4 91 75.8
MD17G1223600 Malus domestica HOM05D007259 ORTHO05D009158 4.7e-35 151.8 83 79.5
Nitab4.5_0000886g0050 Nicotiana tabacum HOM05D007259 ORTHO05D009158 1.4e-34 150.2 91 70.3
FAN02G2583 Fragaria x ananassa HOM05D007259 ORTHO05D009158 3.1e-34 149.1 82 81.7
vmacro19057 Vaccinium macrocarpon HOM05D007259 ORTHO05D009158 5.2e-34 148.3 81 84.0
Cpa.g.sc10.78 Carica papaya HOM05D007259 ORTHO05D009158 1.2e-33 147.1 82 76.8
Lj5C80T7 Lonicera japonica HOM05D007259 ORTHO05D009158 2.9e-32 142.5 82 78.0
ATR0739G058 Amborella trichopoda HOM05D007259 ORTHO05D009158 3.8e-32 142.1 87 74.7
MELO3C026739.2 Cucumis melo HOM05D007259 ORTHO05D009158 4.3e-28 128.6 82 70.7
HPP92_010738 Vanilla planifolia HOM05D007259 ORTHO05D009158 2.0e-25 119.8 94 60.6
SalBow8G2481 Salvia bowleyana HOM05D007259 ORTHO05D009158 8.4e-16 87.8 69 63.8
COL.COLO4_26703 Corchorus olitorius HOM05D007259 ORTHO05D009158 7.4e-12 74.7 43 76.7


User provided reference genes

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